Rh3DG091200

dna binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017503
Physical Location & Seq
Reverse (-)
7041962 .. 7042819
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG091200.1

Sequence Viewer

Length: 858 bp
ATGAAGAACCCTAATTCCGACGACACGGCTCCCAATCCAGAACCGAACAACCACCATAGCGCCGACAATGGGCGGCTGAGAGTAGAGGCACCGGGACCAGCCTCGGCCGGAGGAGGAGGAGGAGCAGCCGGCGGCGGAGTGGTAGAGGAGTGCAGCAACTGCGGGACCAAGAAGGGGTGGGTCCTACACAATGTTCGTTACCGAGCCACCCTCCGCCGCCTCTGCACCTCCTGCGTCCTCCGCCTCCACCCGGCCAGCTTCTGCCCCATCTGCTTCCTGTTCCAGGACCACGGCAATTCCCAAAATGCCCCTCCCCCCAACCTCGTCTCCTGCTCCAAGTGCCCCTCCCTCTCCCACTCCGACTGCCTCCCTCCCTACGCCGCCTTCTCCCCCTCCCCGTTCCTCTGCCCGCCCTGCGCCTCCGCCAACCCCAAATTCTCCTTCTTCGAGCTCGACGACCGCAACAAGGTCCTCGACAAGCGCCTCGCCGCCGTGCTGCTCTGCGCCGCCAGCATCGCCGCCTCGTCCATGTCCAAAGCCGCTGCCATCTCACGCGCCGAGGCCGAGCGGCGCGTGAGGGAGGCCGCCTCGGCTCGGAAGCGCGCTCGCGAGGCCTTGGACCGCTTCGTGCTCCTCTCCACCGGCTCCTCCTTCCAACCCGGACCCGTCGTCAAGGCGGCGGCGGCTCGCGCAACCGAGGTCTCTGGCTCCTCCAATGGCGGGAAAGAACCCTCCAAGAGCAAGACCACCACCCCGGTTGCATTGACGAACAAAGCTCATCACCCTAATGGGGGCTTGCATCATAAACAAGAAGAAAAGGCTGAAGAGCAGAAGGTGAAATTGGAGCTGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

30.14

Weight (kDa)

9.18

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09520
fragaria_vesca FvH4_6g08440
rosa_chinensis RchiOBHm_Chr3g0458411
rosa_laevigata RLG00000025159
rosa_multiflora Rmu_sc0013809.1_g000002
rosa_roxburghii Rroxscaffold_6G00421090
rosa_rugosa Rorug03G0027700
rosa_samantha Rh3AG087500 Rh3BG090300 Rh3CG090600 Rh3DG091200
rosa_wichuraiana Rw3G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 568
AccII CGCG 5 cut(s) 555, 573, 603, 609, 690
AcoI YGGCCR 2 cut(s) 105, 252
AcsI RAATTY 1 cut(s) 434
AcuI CTGAAG 1 cut(s) 843
AfiI CCNNNNNNNGG 9 cut(s) 69, 174, 250, 283, 466, 594, 720, 790, 791
AhdI GACNNNNNGTC 1 cut(s) 668
AjnI CCWGG 1 cut(s) 282
AjuI GAANNNNNNNTTGG 6 cut(s) 419, 425, 451, 457, 824, 856
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 4 cut(s) 258, 451, 776, 847
AluI AGCT 4 cut(s) 258, 451, 776, 847
Alw21I GWGCWC 2 cut(s) 453, 633
Alw26I GTCTC 2 cut(s) 331, 706
AlwNI CAGNNNCTG 2 cut(s) 159, 261
AoxI GGCC 5 cut(s) 105, 252, 561, 582, 612
ApeKI GCWGC 4 cut(s) 125, 153, 496, 542
ApoI RAATTY 1 cut(s) 434
AspLEI GCGC 9 cut(s) 62, 419, 483, 506, 557, 573, 603, 605, 692
AspS9I GGNCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
AsuC2I CCSGG 4 cut(s) 93, 251, 660, 755
AsuHPI GGTGA 2 cut(s) 773, 847
AvaII GGWCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
BaeGI GKGCMC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 453
Bbv12I GWGCWC 2 cut(s) 453, 633
BbvI GCAGC 4 cut(s) 137, 165, 483, 529
BccI CCATC 2 cut(s) 275, 554
BceAI ACGGC 3 cut(s) 42, 307, 476
BciT130I CCWGG 1 cut(s) 284
BcnI CCSGG 4 cut(s) 93, 251, 660, 755
BcoDI GTCTC 2 cut(s) 331, 706
BfoI RGCGCY 2 cut(s) 63, 484
BglI GCCNNNNNGGC 1 cut(s) 590
Bme1390I CCNGG 5 cut(s) 93, 251, 284, 660, 755
Bme18I GGWCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
BmeRI GACNNNNNGTC 1 cut(s) 668
BmgT120I GGNCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
BmiI GGNNCC 8 cut(s) 30, 90, 96, 166, 182, 646, 664, 709
BmrFI CCNGG 5 cut(s) 93, 251, 284, 660, 755
BmsI GCATC 2 cut(s) 522, 808
BplI GAGNNNNNCTC 4 cut(s) 195, 227, 572, 604
BpuMI CCSGG 4 cut(s) 93, 251, 660, 755
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 7 cut(s) 102, 289, 558, 588, 615, 696, 753
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 9 cut(s) 69, 174, 250, 283, 466, 594, 720, 790, 791
Bse118I RCCGGY 2 cut(s) 128, 641
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 7 cut(s) 102, 289, 558, 588, 615, 696, 753
BseLI CCNNNNNNNGG 9 cut(s) 69, 174, 250, 283, 466, 594, 720, 790, 791
BseMII CTCAG 1 cut(s) 68
BsePI GCGCGC 1 cut(s) 601
BseRI GAGGAG 8 cut(s) 126, 129, 132, 135, 161, 623, 637, 700
BseSI GKGCMC 1 cut(s) 344
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 137, 165, 483, 529
BsgI GTGCAG 2 cut(s) 172, 208
Bsh1236I CGCG 5 cut(s) 555, 573, 603, 609, 690
Bsh1285I CGRYCG 2 cut(s) 108, 460
BshFI GGCC 5 cut(s) 107, 254, 563, 584, 614
BshNI GGYRCC 1 cut(s) 88
BsiEI CGRYCG 2 cut(s) 108, 460
BsiHKAI GWGCWC 2 cut(s) 453, 633
BsiSI CCGG 7 cut(s) 92, 108, 129, 251, 642, 660, 755
BslFI GGGAC 2 cut(s) 108, 178
BslI CCNNNNNNNGG 9 cut(s) 69, 174, 250, 283, 466, 594, 720, 790, 791
BsmAI GTCTC 2 cut(s) 331, 706
BsmBI CGTCTC 1 cut(s) 331
BsmFI GGGAC 2 cut(s) 108, 178
BsnI GGCC 5 cut(s) 107, 254, 563, 584, 614
Bso31I GGTCTC 1 cut(s) 706
Bsp1286I GDGCHC 3 cut(s) 344, 453, 633
Bsp68I TCGCGA 1 cut(s) 609
BspANI GGCC 5 cut(s) 107, 254, 563, 584, 614
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 5 cut(s) 555, 573, 603, 609, 690
BspLI GGNNCC 8 cut(s) 30, 90, 96, 166, 182, 646, 664, 709
BspQI GCTCTTC 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 706
BsrBI CCGCTC 1 cut(s) 568
BsrFI RCCGGY 2 cut(s) 128, 641
BssAI RCCGGY 2 cut(s) 128, 641
BssECI CCNNGG 7 cut(s) 102, 289, 558, 588, 615, 696, 753
BssHII GCGCGC 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 819
BstAPI GCANNNNNTGC 2 cut(s) 159, 231
BstC8I GCNNGC 8 cut(s) 130, 256, 410, 511, 603, 607, 688, 797
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 281
BstFNI CGCG 5 cut(s) 555, 573, 603, 609, 690
BstH2I RGCGCY 2 cut(s) 63, 484
BstHHI GCGC 9 cut(s) 62, 419, 483, 506, 557, 573, 603, 605, 692
BstMAI GTCTC 2 cut(s) 331, 706
BstMCI CGRYCG 2 cut(s) 108, 460
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 5 cut(s) 91, 249, 282, 658, 753
BstSLI GKGCMC 1 cut(s) 344
BstUI CGCG 5 cut(s) 555, 573, 603, 609, 690
BstV1I GCAGC 4 cut(s) 137, 165, 483, 529
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 5 cut(s) 107, 254, 563, 584, 614
BtgI CCRYGG 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 499
BtuMI TCGCGA 1 cut(s) 609
Cac8I GCNNGC 8 cut(s) 130, 256, 410, 511, 603, 607, 688, 797
CaiI CAGNNNCTG 2 cut(s) 159, 261
CfoI GCGC 9 cut(s) 62, 419, 483, 506, 557, 573, 603, 605, 692
Cfr10I RCCGGY 2 cut(s) 128, 641
Cfr13I GGNCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
CseI GACGC 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 1 cut(s) 529
DdeI CTNAG 1 cut(s) 77
DriI GACNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 2 cut(s) 105, 252
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 819
Eam1105I GACNNNNNGTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 819
EciI GGCGGA 4 cut(s) 150, 203, 230, 412
Ecl136II GAGCTC 1 cut(s) 451
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 615
Eco147I AGGCCT 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 843
EcoICRI GAGCTC 1 cut(s) 451
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 2 cut(s) 181, 469
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 615
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 331
FaeI CATG 1 cut(s) 532
FaiI YATR 3 cut(s) 57, 530, 804
FaqI GGGAC 2 cut(s) 108, 178
FatI CATG 1 cut(s) 528
FauI CCCGC 3 cut(s) 155, 417, 713
FriOI GRGCYC 1 cut(s) 453
GlaI GCGC 9 cut(s) 61, 418, 482, 505, 556, 572, 602, 604, 691
HaeII RGCGCY 2 cut(s) 63, 484
HaeIII GGCC 5 cut(s) 107, 254, 563, 584, 614
HapII CCGG 7 cut(s) 92, 108, 129, 251, 642, 660, 755
HgaI GACGC 1 cut(s) 223
HhaI GCGC 9 cut(s) 62, 419, 483, 506, 557, 573, 603, 605, 692
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 9 cut(s) 60, 417, 481, 504, 555, 571, 601, 603, 690
HinP1I GCGC 9 cut(s) 60, 417, 481, 504, 555, 571, 601, 603, 690
HpaII CCGG 7 cut(s) 92, 108, 129, 251, 642, 660, 755
HphI GGTGA 2 cut(s) 773, 847
Hpy188I TCNGA 3 cut(s) 19, 361, 597
Hpy188III TCNNGA 2 cut(s) 38, 608
Hpy99I CGWCG 3 cut(s) 23, 458, 671
HpyAV CCTTC 5 cut(s) 166, 394, 451, 661, 826
HpyCH4V TGCA 4 cut(s) 153, 225, 761, 799
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 9 cut(s) 60, 417, 481, 504, 555, 571, 601, 603, 690
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 7 cut(s) 34, 122, 338, 636, 650, 713, 844
Lsp1109I GCAGC 4 cut(s) 137, 165, 483, 529
LweI GCATC 2 cut(s) 522, 808
MaeIII GTNAC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 568
MboII GAAGA 4 cut(s) 16, 436, 824, 836
MhlI GDGCHC 3 cut(s) 344, 453, 633
MluCI AATT 4 cut(s) 13, 295, 434, 839
MmeI TCCRAC 3 cut(s) 42, 384, 679
MroNI GCCGGC 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 7 cut(s) 92, 108, 129, 251, 642, 660, 755
MspR9I CCNGG 5 cut(s) 93, 251, 284, 660, 755
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 5 cut(s) 555, 573, 603, 609, 690
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 4 cut(s) 93, 251, 660, 755
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 8 cut(s) 30, 90, 96, 166, 182, 646, 664, 709
NmeAIII GCCGAG 4 cut(s) 83, 569, 583, 589
NruI TCGCGA 1 cut(s) 609
PauI GCGCGC 1 cut(s) 601
PceI AGGCCT 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 819
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 282
PpuMI RGGWCCY 2 cut(s) 181, 469
Psp124BI GAGCTC 1 cut(s) 453
Psp5II RGGWCCY 2 cut(s) 181, 469
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 8 cut(s) 30, 90, 96, 166, 182, 646, 664, 709
PspPI GGNCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
PspPPI RGGWCCY 2 cut(s) 181, 469
PstNI CAGNNNCTG 2 cut(s) 159, 261
PteI GCGCGC 1 cut(s) 601
RruI TCGCGA 1 cut(s) 609
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 819
Sau96I GGNCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
ScrFI CCNGG 5 cut(s) 93, 251, 284, 660, 755
SduI GDGCHC 3 cut(s) 344, 453, 633
SetI ASST 9 cut(s) 230, 260, 324, 453, 471, 702, 778, 837, 849
SfaNI GCATC 2 cut(s) 522, 808
SinI GGWCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
SmiMI CAYNNNNRTG 1 cut(s) 786
Sse9I AATT 4 cut(s) 13, 295, 434, 839
SseBI AGGCCT 1 cut(s) 614
SstI GAGCTC 1 cut(s) 453
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 5 cut(s) 91, 249, 282, 658, 753
StyI CCWWGG 1 cut(s) 615
TaqI TCGA 3 cut(s) 447, 453, 474
TasI AATT 4 cut(s) 13, 295, 434, 839
TseI GCWGC 4 cut(s) 125, 153, 496, 542
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 7 cut(s) 95, 165, 181, 286, 469, 619, 662
XagI CCTNNNNNAGG 1 cut(s) 281
XapI RAATTY 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.