AT1G09665

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018301
Physical Location & Seq
Forward (+)
3133008 .. 3133674
667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09665.1

Sequence Viewer

Length: 498 bp
ATGAAAAGGAGTAGTAGTAATAGGAAGATCCAAGTGTTCATCAATTTCCGGGGAGAGGAGCTACGCTGCAGCTTTGTGAGCCACCTCGTTGACGCTTTTAAAAGACATGGAATCAACTTCTTCATAGACAAAGACGAACAAAAAGGGAAAGACCTCAAACATCTCTTTGCAAGGATCAAGCAATCGAGGATGGCTCTCACCATATTTTCCAAAAGATACGCAGAGTCAAGCTGGTGCCTGGACGAGCTTGCAAGGATCAAGAAAAGAGCCGATAAATGCAAGCTACGAGTGGTTCCTATCTTCTTTAAAGTGAAGGCAGAGTCTGTTAGATATCAAAAGGCTGAGTTTGGTCGCAACTTCTGGAGGTTGGCTAAGACTTCGAGTGGAGAACAAATCAAGAAATGGAAGGAAGCTTTAGAGTCTGTTTCTGACAAGGTGGGCTTAACGTTAGGCGACAAAAGAACAAACAAATGGGTCCAGATGTACATAAATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

165

Amino Acids

19.46

Weight (kDa)

10.2

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 150 4.1e-35 TIR domain
TIR_2 PF13676 12 - 105 2e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09665 AT1G47370 AT1G57670 AT1G57830 AT1G57850 AT1G57850 AT1G57850 AT1G60320 AT2G03030 AT2G03300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AclI AACGTT 1 cut(s) 446
AclWI GGATC 3 cut(s) 22, 182, 263
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 55
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 6 cut(s) 61, 72, 231, 247, 283, 413
AluI AGCT 6 cut(s) 61, 72, 231, 247, 283, 413
AlwI GGATC 3 cut(s) 22, 182, 263
AlwNI CAGNNNCTG 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 66, 69
AspS9I GGNCC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 475
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 53, 81
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 2 cut(s) 67, 70
BlsI GCNGC 2 cut(s) 68, 71
Bme1390I CCNGG 2 cut(s) 50, 239
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 475
BmiI GGNNCC 3 cut(s) 236, 294, 476
BmrFI CCNGG 2 cut(s) 50, 239
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 1 cut(s) 382
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 53, 81
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 55
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 3 cut(s) 27, 174, 255
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 236, 294, 476
BspMAI CTGCAG 1 cut(s) 71
BspPI GGATC 3 cut(s) 22, 182, 263
BspT107I GGYRCC 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 3 cut(s) 27, 174, 255
Bst2UI CCWGG 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 249, 281
BstDEI CTNAG 2 cut(s) 342, 372
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 3 cut(s) 30, 177, 258
BstMBI GATC 3 cut(s) 27, 174, 255
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 48, 237
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 53, 81
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BtsCI GGATG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 249, 281
CaiI CAGNNNCTG 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 475
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 484
CviAII CATG 1 cut(s) 107
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 2 cut(s) 342, 372
DpnI GATC 3 cut(s) 29, 176, 257
DpnII GATC 3 cut(s) 27, 174, 255
DraI TTTAAA 2 cut(s) 100, 307
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 332
FaeI CATG 1 cut(s) 110
FaiI YATR 4 cut(s) 108, 125, 203, 488
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 67, 70
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 67, 70
GluI GCNGC 2 cut(s) 67, 70
GsuI CTGGAG 1 cut(s) 382
HapII CCGG 1 cut(s) 49
HgaI GACGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 4 cut(s) 111, 224, 320, 419
HpaII CCGG 1 cut(s) 49
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 4 cut(s) 259, 361, 397, 478
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 307, 400
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 4 cut(s) 69, 170, 251, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 2 cut(s) 342, 372
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 3 cut(s) 27, 174, 255
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 62, 217, 224, 251, 346, 491
Lsp1109I GCAGC 2 cut(s) 53, 81
MaeII ACGT 1 cut(s) 446
MalI GATC 3 cut(s) 29, 176, 257
MboI GATC 3 cut(s) 27, 174, 255
MboII GAAGA 3 cut(s) 37, 112, 292
MflI RGATCY 1 cut(s) 27
MluCI AATT 1 cut(s) 43
MlyI GAGTC 3 cut(s) 233, 329, 428
MnlI CCTC 5 cut(s) 49, 95, 164, 180, 357
MseI TTAA 3 cut(s) 99, 306, 443
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 50, 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 27, 174, 255
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 236, 294, 476
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 68, 71
PleI GAGTC 3 cut(s) 232, 328, 427
PpsI GAGTC 3 cut(s) 232, 328, 427
Psp1406I AACGTT 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 236, 294, 476
PspPI GGNCC 1 cut(s) 475
PstI CTGCAG 1 cut(s) 71
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SaqAI TTAA 3 cut(s) 99, 306, 443
SatI GCNGC 2 cut(s) 67, 70
Sau3AI GATC 3 cut(s) 27, 174, 255
Sau96I GGNCC 1 cut(s) 475
SchI GAGTC 3 cut(s) 233, 329, 428
ScrFI CCNGG 2 cut(s) 50, 239
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 475
Sse9I AATT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 48, 237
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 185, 380
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 3 cut(s) 99, 306, 443
Tru9I TTAA 3 cut(s) 99, 306, 443
TseI GCWGC 2 cut(s) 66, 69
TspDTI ATGAA 3 cut(s) 17, 28, 112
VpaK11BI GGWCC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.