AT1G60320

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22235091 .. 22235606
516 bp
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UTR
Exon/CDS
Intron
AT1G60320.1

Sequence Viewer

Length: 516 bp
ATGACAAAGAGTGTTAAGAAGATCCCGATGGTGGCTATCTCTCGATTCATGCAGCCTCCACAGTTCCAGGACCAGGTGTTTATCAACTTCCGAGGAGAGGAAATTCGCTATAGCTTCCTCAGCCACCTCGCTGCCGCTTTTGAACTACACGGAATAAACTTCTTCATTGACAAAGATGAACAGAAGGGAAAAGACCTTAAACACCTTTTCAAAAGGATCAAGCAGTCGCAGATTGCATTAGCAATCTTTTCCGAAAGATATGCGGAGTCCCCATGGTGCTTGAACGAACTGGCAAAGATGAAGAAACTTGCAAAGAAGGGCAAATTAAATGTGGTTCCTATTTTCTACAAGGTGGAGGTAAATGATGTGAGACACCAAGAGGGAAAATTTGGTAGTAACTTTTGGAAGTTGGCAAAGATTTCTAGTGGTGACGAGATCAAGAAGTGGAAGGAAGCTTTGGAGTTTTTCTCTAATAAGATGGGCTTGACGTTATGTGGCAAGAGGTACTCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

19.95

Weight (kDa)

9.76

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 25 - 161 1.2e-35 TIR domain
TIR_2 PF13676 26 - 119 1.4e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018301)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 135, 263
AclWI GGATC 2 cut(s) 16, 224
AcsI RAATTY 2 cut(s) 102, 386
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 3 cut(s) 31, 73, 97
AgsI TTSAA 3 cut(s) 143, 211, 283
AjnI CCWGG 2 cut(s) 66, 72
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 2 cut(s) 114, 455
AluI AGCT 2 cut(s) 114, 455
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 2 cut(s) 16, 224
ApeKI GCWGC 2 cut(s) 52, 131
ApoI RAATTY 2 cut(s) 102, 386
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 440
AvaII GGWCC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 64, 118
BccI CCATC 2 cut(s) 22, 472
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 2 cut(s) 68, 74
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 3 cut(s) 53, 132, 135
BlsI GCNGC 3 cut(s) 54, 133, 136
Bme1390I CCNGG 2 cut(s) 68, 74
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 68, 74
BplI GAGNNNNNCTC 2 cut(s) 452, 484
Bpu10I CCTNAGC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 91, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 73, 97
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 68, 74
BseDI CCNNGG 2 cut(s) 91, 272
BseLI CCNNNNNNNGG 3 cut(s) 31, 73, 97
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 64, 118
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 31, 73, 97
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 21, 216, 435
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 2 cut(s) 135, 263
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 16, 224
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 91, 272
BssMI GATC 3 cut(s) 21, 216, 435
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 68, 74
Bst4CI ACNGT 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 272
BstKTI GATC 3 cut(s) 24, 219, 438
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 3 cut(s) 21, 216, 435
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 2 cut(s) 68, 74
BstSCI CCNGG 2 cut(s) 66, 72
BstSFI CTRYAG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 64, 118
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 70
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 505
CviAII CATG 3 cut(s) 49, 273, 513
CviJI RGCY 6 cut(s) 35, 55, 114, 123, 455, 483
CviKI_1 RGCY 6 cut(s) 35, 55, 114, 123, 455, 483
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 1 cut(s) 119
DpnI GATC 3 cut(s) 23, 218, 437
DpnII GATC 3 cut(s) 21, 216, 435
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 66, 72
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 3 cut(s) 52, 276, 516
FaiI YATR 6 cut(s) 50, 111, 261, 274, 493, 514
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 48, 272, 512
Fnu4HI GCNGC 3 cut(s) 53, 132, 135
Fsp4HI GCNGC 3 cut(s) 53, 132, 135
FspBI CTAG 1 cut(s) 423
GluI GCNGC 3 cut(s) 53, 132, 135
Hin1II CATG 3 cut(s) 52, 276, 516
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 2 cut(s) 45, 266
HphI GGTGA 1 cut(s) 440
Hpy188I TCNGA 2 cut(s) 92, 253
Hpy188III TCNNGA 3 cut(s) 25, 42, 439
HpyAV CCTTC 3 cut(s) 178, 310, 442
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 52, 236, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 3 cut(s) 52, 276, 516
Kzo9I GATC 3 cut(s) 21, 216, 435
LpnPI CCDG 5 cut(s) 53, 59, 80, 86, 275
Lsp1109I GCAGC 2 cut(s) 64, 118
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 2 cut(s) 395, 428
MalI GATC 3 cut(s) 23, 218, 437
MboI GATC 3 cut(s) 21, 216, 435
MboII GAAGA 3 cut(s) 31, 154, 313
MflI RGATCY 1 cut(s) 21
MluCI AATT 3 cut(s) 102, 323, 386
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 8 cut(s) 66, 86, 91, 128, 137, 349, 373, 495
MseI TTAA 3 cut(s) 15, 198, 326
MspR9I CCNGG 2 cut(s) 68, 74
MvaI CCWGG 2 cut(s) 68, 74
MwoI GCNNNNNNNGC 1 cut(s) 120
NcoI CCATGG 1 cut(s) 272
NdeII GATC 3 cut(s) 21, 216, 435
NlaIII CATG 3 cut(s) 52, 276, 516
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 45
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 3 cut(s) 54, 133, 136
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 66, 72
PspGI CCWGG 2 cut(s) 66, 72
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SaqAI TTAA 3 cut(s) 15, 198, 326
SatI GCNGC 3 cut(s) 53, 132, 135
Sau3AI GATC 3 cut(s) 21, 216, 435
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 68, 74
SexAI ACCWGGT 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 70
Sse9I AATT 3 cut(s) 102, 323, 386
SsiI CCGC 2 cut(s) 135, 263
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 66, 72
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 102, 323, 386
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 3 cut(s) 15, 198, 326
Tru9I TTAA 3 cut(s) 15, 198, 326
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 52, 131
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 4 cut(s) 37, 154, 192, 314
TspGWI ACGGA 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 102, 386
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.