AT1G47370

regulation of response to stimulus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018301
Physical Location & Seq
Reverse (-)
17365898 .. 17368703
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47370.1

Sequence Viewer

Length: 1092 bp
ATGACGAGCGTGTCTCCTCGGTACAGAAATGTTCCTGTCCCTAAAGTGTTCCTTAGTTTCCGAGGAGAAGAGATTCGTCATGGGTTTATCAGCCACCTCGCTGATGCTTTAGAGAGATATGGGATCATGTTCATCATAGATAAAGACGAGCAACGTGGAAATGACTTGACAAGTCTCCTTTTAAGGATCAAAGAGTCAAAAGTTGCCCTGGTCATCTTCTCTAGCAGGTTTGCGGAGTCGAGGTTTTGTATGGATGAGATTGTCAAGATGAAGGAATGCGTAGATGAAAGAAAGCTTCTAGTCATTCCTATCTTCTATAAGGTTAGGGCAAGAGATGTGAGCGGCCGCACAGGTGACTTTGGTAAAAAGTTTTGGGCGCTTGCTCAAAAGTCTCGAGGATGTCAAATCAAGGAGTGGATGGAAGCCCTAGAGTGTATTTCTAATAAGATGGGTTTGTCCCTGGGAGACGGAAGGTCTGAAGCCGATTTTATTAAGGAAATCGTTAAAGAGGTTGAGAGAGTTCTAGCCACATTTACAAGCGAGGACACAGAAGATCATCACTGTCAAACCGTTAAGCTTTTGAAGGGCCTCGTCGTGGGTTGCCTTGCCCATCAAGAACTGCCGTTGGTGTTGGTTTTTACTCAAGTTTACTACTATGTTAAGTTTTCTATTTTCTTCATTGAGGAGATATTCTCATCATGTTTTAGGAAAGGCTTTGTCTTAAAGCCCTGCAAGGAGGACTTGCAAATCAATTCGATATCGATTCCTGGAATCGATCTCGAAAATTTCAAGAATATGATGCAACAAGCGATGTACGAACTGAATCAAATGTTGCTGCAAAGTCTTGGCAACATAGACCCTCATCGTGATGTTGCTTTTGAAAACCAGCCACAAGACCAACCAGATAGTCCGATTGCTCTCCCGGAAGAACGTAGAGTTGCTTTGGAAGCAACCAAATTCTGTGGTCACGCTGCATATTGGTGGAATCAGACAAAGACAACTCGTGCCCGCATTGGAAAAGTTCTAATTCATTTTTGGGAGAAGCTCAAGAAAAAGTTTAAGGACACGTATGACAGGACTGTAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COR Roc TIR TIR_2

Protein Analysis

363

Amino Acids

42.12

Weight (kDa)

8.6

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 183 1.9e-35 TIR domain
TIR_2 PF13676 16 - 108 4.7e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09665 AT1G47370 AT1G57670 AT1G57830 AT1G57850 AT1G57850 AT1G57850 AT1G60320 AT2G03030 AT2G03300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 4 cut(s) 233, 342, 346, 1009
AclWI GGATC 2 cut(s) 131, 194
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 2 cut(s) 784, 956
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 2 cut(s) 23, 815
AfiI CCNNNNNNNGG 1 cut(s) 595
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 3 cut(s) 583, 790, 881
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 3 cut(s) 207, 459, 766
AluBI AGCT 3 cut(s) 295, 577, 1045
AluI AGCT 3 cut(s) 295, 577, 1045
Alw26I GTCTC 4 cut(s) 18, 179, 396, 459
AlwI GGATC 2 cut(s) 131, 194
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 2 cut(s) 343, 586
ApeKI GCWGC 2 cut(s) 835, 971
ApoI RAATTY 2 cut(s) 784, 956
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 1009
BauI CACGAG 1 cut(s) 1002
BbvI GCAGC 2 cut(s) 822, 958
BccI CCATC 3 cut(s) 412, 442, 618
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 3 cut(s) 209, 461, 768
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 4 cut(s) 18, 179, 396, 459
BfaI CTAG 4 cut(s) 222, 299, 428, 524
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 216
BisI GCNGC 4 cut(s) 343, 346, 836, 972
BlsI GCNGC 4 cut(s) 344, 347, 837, 973
Bme1390I CCNGG 4 cut(s) 209, 461, 768, 923
BmeRI GACNNNNNGTC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 586
BmrFI CCNGG 4 cut(s) 209, 461, 768, 923
BmsI GCATC 2 cut(s) 94, 789
BplI GAGNNNNNCTC 3 cut(s) 30, 677, 709
BpuEI CTTGAG 2 cut(s) 627, 1031
BpuMI CCSGG 1 cut(s) 923
Bsa29I ATCGAT 2 cut(s) 761, 774
BsaAI YACGTR 1 cut(s) 1068
BsaJI CCNNGG 5 cut(s) 17, 61, 207, 459, 460
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 595
BseBI CCWGG 3 cut(s) 209, 461, 768
BseCI ATCGAT 2 cut(s) 761, 774
BseDI CCNNGG 5 cut(s) 17, 61, 207, 459, 460
BseGI GGATG 3 cut(s) 259, 404, 423
BseLI CCNNNNNNNGG 1 cut(s) 595
BseRI GAGGAG 3 cut(s) 6, 78, 698
BseSI GKGCMC 1 cut(s) 1009
BseX3I CGGCCG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 822, 958
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 345, 588
BshVI ATCGAT 2 cut(s) 761, 774
BsiEI CGRYCG 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 2 cut(s) 23, 442
BslI CCNNNNNNNGG 1 cut(s) 595
BsmAI GTCTC 4 cut(s) 18, 179, 396, 459
BsmBI CGTCTC 1 cut(s) 459
BsmFI GGGAC 2 cut(s) 23, 442
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 2 cut(s) 345, 588
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 1009
Bsp143I GATC 4 cut(s) 123, 186, 553, 775
BspACI CCGC 4 cut(s) 233, 342, 346, 1009
BspANI GGCC 2 cut(s) 345, 588
BspDI ATCGAT 2 cut(s) 761, 774
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 2 cut(s) 131, 194
BsrBI CCGCTC 1 cut(s) 342
BssECI CCNNGG 5 cut(s) 17, 61, 207, 459, 460
BssMI GATC 4 cut(s) 123, 186, 553, 775
BssSI CACGAG 1 cut(s) 1002
Bst2BI CACGAG 1 cut(s) 1002
Bst2UI CCWGG 3 cut(s) 209, 461, 768
Bst4CI ACNGT 3 cut(s) 563, 571, 1081
Bst6I CTCTTC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 1068
BstC8I GCNNGC 2 cut(s) 381, 1009
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 3 cut(s) 259, 404, 423
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 126, 189, 556, 778
BstMAI GTCTC 4 cut(s) 18, 179, 396, 459
BstMBI GATC 4 cut(s) 123, 186, 553, 775
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 947
BstNI CCWGG 3 cut(s) 209, 461, 768
BstSCI CCNGG 4 cut(s) 207, 459, 766, 921
BstSLI GKGCMC 1 cut(s) 1009
BstV1I GCAGC 2 cut(s) 822, 958
BstZI CGGCCG 1 cut(s) 343
Bsu15I ATCGAT 2 cut(s) 761, 774
BsuRI GGCC 2 cut(s) 345, 588
BsuTUI ATCGAT 2 cut(s) 761, 774
BtgZI GCGATG 1 cut(s) 824
BtsCI GGATG 3 cut(s) 259, 404, 423
BtsIMutI CAGTG 1 cut(s) 559
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 381, 1009
CciNI GCGGCCGC 1 cut(s) 343
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 586
ClaI ATCGAT 2 cut(s) 761, 774
Csp6I GTAC 2 cut(s) 22, 814
CspCI CAANNNNNGTGG 2 cut(s) 943, 978
CviAII CATG 3 cut(s) 80, 127, 699
CviQI GTAC 2 cut(s) 22, 814
DdeI CTNAG 1 cut(s) 53
DpnI GATC 4 cut(s) 125, 188, 555, 777
DpnII GATC 4 cut(s) 123, 186, 553, 775
DrdI GACNNNNNNGTC 1 cut(s) 10
DriI GACNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 343
EagI CGGCCG 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 343
Eco32I GATATC 1 cut(s) 759
Eco52I CGGCCG 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 3 cut(s) 207, 459, 766
EcoRV GATATC 1 cut(s) 759
Esp3I CGTCTC 1 cut(s) 459
FaeI CATG 3 cut(s) 83, 130, 702
FalI AAGNNNNNCTT 4 cut(s) 36, 68, 725, 757
FaqI GGGAC 2 cut(s) 23, 442
FatI CATG 3 cut(s) 79, 126, 698
FauI CCCGC 1 cut(s) 1016
Fnu4HI GCNGC 4 cut(s) 343, 346, 836, 972
FokI GGATG 3 cut(s) 266, 411, 430
Fsp4HI GCNGC 4 cut(s) 343, 346, 836, 972
FspBI CTAG 4 cut(s) 222, 299, 428, 524
GlaI GCGC 1 cut(s) 378
GluI GCNGC 4 cut(s) 343, 346, 836, 972
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 345, 588
HapII CCGG 1 cut(s) 923
HhaI GCGC 1 cut(s) 379
Hin1II CATG 3 cut(s) 83, 130, 702
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 2 cut(s) 293, 575
HinfI GANTC 7 cut(s) 73, 194, 236, 763, 771, 823, 985
HpaII CCGG 1 cut(s) 923
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 62, 478, 912, 990
Hpy188III TCNNGA 7 cut(s) 265, 393, 614, 779, 790, 866, 1048
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 3 cut(s) 265, 465, 577
HpyCH4III ACNGT 3 cut(s) 563, 571, 1081
HpyCH4IV ACGT 3 cut(s) 154, 931, 1067
HpyCH4V TGCA 5 cut(s) 732, 745, 802, 838, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 947
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 3 cut(s) 154, 931, 1067
Hsp92II CATG 3 cut(s) 83, 130, 702
HspAI GCGC 1 cut(s) 377
Kzo9I GATC 4 cut(s) 123, 186, 553, 775
Lsp1109I GCAGC 2 cut(s) 822, 958
LweI GCATC 2 cut(s) 94, 789
MaeI CTAG 4 cut(s) 222, 299, 428, 524
MaeII ACGT 3 cut(s) 154, 931, 1067
MaeIII GTNAC 2 cut(s) 353, 965
MalI GATC 4 cut(s) 125, 188, 555, 777
MbiI CCGCTC 1 cut(s) 342
MboI GATC 4 cut(s) 123, 186, 553, 775
MboII GAAGA 6 cut(s) 80, 208, 304, 563, 667, 938
MhlI GDGCHC 1 cut(s) 1009
MluCI AATT 4 cut(s) 751, 784, 956, 1026
MlyI GAGTC 2 cut(s) 203, 245
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 7 cut(s) 182, 492, 504, 573, 660, 722, 1059
MslI CAYNNNNRTG 2 cut(s) 867, 979
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 4 cut(s) 209, 461, 768, 923
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 3 cut(s) 209, 461, 768
MwoI GCNNNNNNNGC 1 cut(s) 947
NciI CCSGG 1 cut(s) 923
NdeII GATC 4 cut(s) 123, 186, 553, 775
NlaIII CATG 3 cut(s) 83, 130, 702
NmuCI GTSAC 2 cut(s) 353, 965
NotI GCGGCCGC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 393
PasI CCCWGGG 1 cut(s) 460
PctI GAATGC 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 5 cut(s) 73, 763, 771, 823, 985
PfoI TCCNGGA 2 cut(s) 766, 921
PkrI GCNGC 4 cut(s) 344, 347, 837, 973
PleI GAGTC 2 cut(s) 202, 244
PpsI GAGTC 2 cut(s) 202, 244
Ppu21I YACGTR 1 cut(s) 1068
Psp6I CCWGG 3 cut(s) 207, 459, 766
PspGI CCWGG 3 cut(s) 207, 459, 766
PspPI GGNCC 1 cut(s) 586
RsaI GTAC 2 cut(s) 23, 815
RsaNI GTAC 2 cut(s) 22, 814
RseI CAYNNNNRTG 2 cut(s) 867, 979
SaqAI TTAA 7 cut(s) 182, 492, 504, 573, 660, 722, 1059
SatI GCNGC 4 cut(s) 343, 346, 836, 972
Sau3AI GATC 4 cut(s) 123, 186, 553, 775
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 2 cut(s) 203, 245
ScrFI CCNGG 4 cut(s) 209, 461, 768, 923
SduI GDGCHC 1 cut(s) 1009
SfaNI GCATC 2 cut(s) 94, 789
Sfr274I CTCGAG 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 867, 979
SmlI CTYRAG 3 cut(s) 393, 642, 1046
SmoI CTYRAG 3 cut(s) 393, 642, 1046
Sse9I AATT 4 cut(s) 751, 784, 956, 1026
SsiI CCGC 4 cut(s) 233, 342, 346, 1009
SspMI CTAG 4 cut(s) 222, 299, 428, 524
StyD4I CCNGG 4 cut(s) 207, 459, 766, 921
TaaI ACNGT 3 cut(s) 563, 571, 1081
TaiI ACGT 3 cut(s) 157, 934, 1070
TaqI TCGA 6 cut(s) 239, 394, 755, 761, 774, 780
TasI AATT 4 cut(s) 751, 784, 956, 1026
TauI GCSGC 2 cut(s) 345, 348
TfiI GAWTC 5 cut(s) 73, 763, 771, 823, 985
Tru1I TTAA 7 cut(s) 182, 492, 504, 573, 660, 722, 1059
Tru9I TTAA 7 cut(s) 182, 492, 504, 573, 660, 722, 1059
TscAI CASTG 1 cut(s) 566
TseFI GTSAC 2 cut(s) 353, 965
TseI GCWGC 2 cut(s) 835, 971
Tsp45I GTSAC 2 cut(s) 353, 965
TspDTI ATGAA 5 cut(s) 121, 284, 300, 667, 1019
TspGWI ACGGA 1 cut(s) 483
TspRI CASTG 1 cut(s) 566
XapI RAATTY 2 cut(s) 784, 956
XhoI CTCGAG 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 4 cut(s) 222, 299, 428, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.