AT1G57670

RESISTANCE protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018301
Physical Location & Seq
Reverse (-)
21357169 .. 21359872
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57670.1

Sequence Viewer

Length: 1164 bp
ATGGCAATTCTATCTCGCCCCGTCAATCAAGTTTTCATCAACTTCCGGGGAAAGGATATTCGCCACGGCTTTGTCAGTCATCTTAAAGATGCCTTGAAAAGAAAAAATATCAACTTCTTCATCGATACACATGAACAAAAGGGAAGAGACCTGAACCACCTCTTTAAACGGATTGAAGAGGCCACGATCGCGCTGGTCATCTTATCCCCAAGGTATGGGGAATCAAAATGGTGTTTGGAAGAACTGACGACAATCATGGACCAAGAAGAAAAAGGGCAAATGATTGTCATCCCAATCTTCTATAAAGTGAGAACGGAAGACGTGGAGAAACAAACGGGAGAGTTCGGCCATATGTTTTGGAGTTGCGATGAAGAAGCAAGTCTTGAAGAGATGGAGAAATGGCAAGTGGCTTTGAAGGCTGTGTGCAACAAAATTGGACTCACGTTGGATCTTAAAAGATCCGAGGCCAAATTTATCAAGAAGGTTCTGAAGGCGGTTGAGGAAGTTTTAACCACTATTCAATCTGATGAAGCAAAAGAAGGCAACTGTGTGGAGGATGTTGAAACATTTAACGTTCCACTGACTCTGCCTTGGTCATGGTTTAGCTCGGCGGTTGAGCTAATTGGTGCAATTCTCGGCTTACTCGCTGAGACTGTTCACGCTGATGAAGGAAGAAGAGAAGCTGATTTTGTGAAGAAAGTGAAAACACTTAATGTTCCACTGGCTTTGCCATGGTTATGGTTTGGCTCGGCGGTTGAACTAATTGGTGCAGTGGTCGGCTTACTCATTAAGGCTGTTCAATCTGATGAAAGAAAAGAAGATGGTTGCGTGAAGAAAGTGAAAACATTTAACATTGCACTGGCTCTGCCATGGTTATGGTTTGGTTCGGCGGTAGAGCTGATTGGTTCAGTGCTTGGCATCATTAACACTGTTCGTTCTGGTGAAGGAAGAGAAGATGATTGTGTGAAGAAAGTGAAAACATTTTACGTTCCACTGGCTCTGCCATGGTTATGGTTTGGCTCTGCGGTTGAGCTGGTTGGTGCAGTGCTCGGCTTACTAAATGAAATTGTTCACAAGTGTGCCTCACCAACCATGGTTATTCTTGCTAGTCAAGTTGGCTCTGTTGTGGCTATTTCGAGCCGTTGGGCTGATAAGTCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

387

Amino Acids

43.34

Weight (kDa)

5.92

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 10 - 177 1.4e-40 TIR domain
TIR_2 PF13676 11 - 107 1.4e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09665 AT1G47370 AT1G57670 AT1G57830 AT1G57850 AT1G57850 AT1G57850 AT1G60320 AT2G03030 AT2G03300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AccII CGCG 1 cut(s) 191
AciI CCGC 5 cut(s) 494, 611, 752, 890, 1025
AclI AACGTT 1 cut(s) 573
AclWI GGATC 2 cut(s) 453, 456
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 52, 215
AgsI TTSAA 8 cut(s) 97, 176, 386, 415, 521, 563, 758, 800
AjiI CACGTC 1 cut(s) 322
AleI CACNNNNGTG 1 cut(s) 1077
AluBI AGCT 5 cut(s) 606, 619, 683, 898, 1033
AluI AGCT 5 cut(s) 606, 619, 683, 898, 1033
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 2 cut(s) 141, 644
AlwI GGATC 2 cut(s) 453, 456
AoxI GGCC 3 cut(s) 180, 346, 465
ApoI RAATTY 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 1068
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 953, 1077
AvaII GGWCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 1050
BccI CCATC 2 cut(s) 385, 815
BceAI ACGGC 2 cut(s) 82, 1125
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 141, 644
BfaI CTAG 1 cut(s) 1107
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 79, 927
BpiI GAAGAC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 123
BsaBI GATNNNNATC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 9 cut(s) 46, 64, 209, 462, 590, 731, 869, 1004, 1092
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 215
Bse1I ACTGG 3 cut(s) 726, 864, 999
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 9 cut(s) 46, 64, 209, 462, 590, 731, 869, 1004, 1092
BseGI GGATG 2 cut(s) 288, 562
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 52, 215
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 1 cut(s) 639
BseNI ACTGG 3 cut(s) 726, 864, 999
BsgI GTGCAG 2 cut(s) 789, 1062
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 3 cut(s) 182, 348, 467
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 1050
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 52, 215
BsmAI GTCTC 2 cut(s) 141, 644
BsnI GGCC 3 cut(s) 182, 348, 467
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 1050
Bsp143I GATC 3 cut(s) 186, 448, 458
Bsp19I CCATGG 4 cut(s) 731, 869, 1004, 1092
BspACI CCGC 5 cut(s) 494, 611, 752, 890, 1025
BspANI GGCC 3 cut(s) 182, 348, 467
BspCNI CTCAG 1 cut(s) 640
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 1 cut(s) 191
BspPI GGATC 2 cut(s) 453, 456
BspTNI GGTCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 3 cut(s) 726, 864, 999
BssECI CCNNGG 9 cut(s) 46, 64, 209, 462, 590, 731, 869, 1004, 1092
BssMI GATC 3 cut(s) 186, 448, 458
BssT1I CCWWGG 6 cut(s) 209, 590, 731, 869, 1004, 1092
Bst4CI ACNGT 3 cut(s) 548, 655, 931
Bst6I CTCTTC 5 cut(s) 139, 171, 381, 670, 943
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 5 cut(s) 64, 731, 869, 1004, 1092
BstF5I GGATG 2 cut(s) 288, 562
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 189, 451, 461
BstMAI GTCTC 2 cut(s) 141, 644
BstMBI GATC 3 cut(s) 186, 448, 458
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 188, 416
BstSCI CCNGG 1 cut(s) 45
BstUI CGCG 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 448, 458
BstXI CCANNNNNNTGG 3 cut(s) 738, 876, 1011
BstYI RGATCY 2 cut(s) 448, 458
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 3 cut(s) 182, 348, 467
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 5 cut(s) 64, 731, 869, 1004, 1092
BtgZI GCGATG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 288, 562
BtsI GCAGTG 2 cut(s) 777, 1050
BtsIMutI CAGTG 8 cut(s) 578, 719, 777, 857, 915, 927, 992, 1050
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 1 cut(s) 123
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 7 cut(s) 131, 256, 597, 732, 870, 1005, 1093
DdeI CTNAG 1 cut(s) 648
DpnI GATC 3 cut(s) 188, 450, 460
DpnII GATC 3 cut(s) 186, 448, 458
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 5 cut(s) 139, 171, 381, 670, 943
EarI CTCTTC 5 cut(s) 139, 171, 381, 670, 943
Eco130I CCWWGG 6 cut(s) 209, 590, 731, 869, 1004, 1092
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 509
EcoT14I CCWWGG 6 cut(s) 209, 590, 731, 869, 1004, 1092
ErhI CCWWGG 6 cut(s) 209, 590, 731, 869, 1004, 1092
FaeI CATG 7 cut(s) 134, 259, 600, 735, 873, 1008, 1096
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 7 cut(s) 130, 255, 596, 731, 869, 1004, 1092
FauNDI CATATG 1 cut(s) 351
FokI GGATG 2 cut(s) 275, 569
FspBI CTAG 1 cut(s) 1107
GlaI GCGC 1 cut(s) 192
HaeIII GGCC 3 cut(s) 182, 348, 467
HapII CCGG 1 cut(s) 46
HhaI GCGC 1 cut(s) 193
Hin1II CATG 7 cut(s) 134, 259, 600, 735, 873, 1008, 1096
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 3 cut(s) 221, 438, 583
HpaII CCGG 1 cut(s) 46
HphI GGTGA 2 cut(s) 953, 1077
Hpy166II GTNNAC 2 cut(s) 658, 1072
Hpy188I TCNGA 5 cut(s) 463, 489, 526, 805, 1163
Hpy188III TCNNGA 2 cut(s) 383, 478
Hpy8I GTNNAC 2 cut(s) 658, 1072
HpyAV CCTTC 6 cut(s) 409, 475, 484, 533, 662, 938
HpyCH4III ACNGT 3 cut(s) 548, 655, 931
HpyCH4IV ACGT 4 cut(s) 321, 443, 573, 987
HpyCH4V TGCA 5 cut(s) 426, 629, 770, 857, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 416
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 4 cut(s) 321, 443, 573, 987
Hsp92II CATG 7 cut(s) 134, 259, 600, 735, 873, 1008, 1096
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 186, 448, 458
LpnPI CCDG 8 cut(s) 59, 164, 179, 707, 845, 924, 980, 1019
LweI GCATC 2 cut(s) 79, 927
MaeI CTAG 1 cut(s) 1107
MaeII ACGT 4 cut(s) 321, 443, 573, 987
MalI GATC 3 cut(s) 188, 450, 460
MboI GATC 3 cut(s) 186, 448, 458
MflI RGATCY 2 cut(s) 448, 458
MhlI GDGCHC 1 cut(s) 1050
MluCI AATT 7 cut(s) 6, 432, 470, 621, 630, 762, 1065
MlyI GAGTC 2 cut(s) 432, 577
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 6 cut(s) 170, 172, 457, 493, 547, 1093
MroXI GAANNNNTTC 1 cut(s) 1068
MseI TTAA 9 cut(s) 84, 165, 453, 509, 570, 711, 789, 849, 924
MslI CAYNNNNRTG 5 cut(s) 663, 736, 874, 1009, 1077
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 188, 416
NciI CCSGG 1 cut(s) 47
NcoI CCATGG 4 cut(s) 731, 869, 1004, 1092
NdeI CATATG 1 cut(s) 351
NdeII GATC 3 cut(s) 186, 448, 458
NlaIII CATG 7 cut(s) 134, 259, 600, 735, 873, 1008, 1096
NmeAIII GCCGAG 4 cut(s) 587, 615, 728, 1029
OliI CACNNNNGTG 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 215
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 2 cut(s) 432, 577
PpsI GAGTC 2 cut(s) 432, 577
Psp1406I AACGTT 1 cut(s) 573
PspPI GGNCC 1 cut(s) 259
PsuI RGATCY 2 cut(s) 448, 458
PvuI CGATCG 1 cut(s) 189
RseI CAYNNNNRTG 5 cut(s) 663, 736, 874, 1009, 1077
SaqAI TTAA 9 cut(s) 84, 165, 453, 509, 570, 711, 789, 849, 924
Sau3AI GATC 3 cut(s) 186, 448, 458
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 2 cut(s) 432, 577
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 1050
SfaNI GCATC 2 cut(s) 79, 927
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 5 cut(s) 663, 736, 874, 1009, 1077
Sse9I AATT 7 cut(s) 6, 432, 470, 621, 630, 762, 1065
SsiI CCGC 5 cut(s) 494, 611, 752, 890, 1025
SspMI CTAG 1 cut(s) 1107
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 6 cut(s) 209, 590, 731, 869, 1004, 1092
TaaI ACNGT 3 cut(s) 548, 655, 931
TaiI ACGT 4 cut(s) 324, 446, 576, 990
TaqI TCGA 2 cut(s) 123, 1136
TasI AATT 7 cut(s) 6, 432, 470, 621, 630, 762, 1065
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 9 cut(s) 84, 165, 453, 509, 570, 711, 789, 849, 924
Tru9I TTAA 9 cut(s) 84, 165, 453, 509, 570, 711, 789, 849, 924
TscAI CASTG 8 cut(s) 585, 726, 777, 864, 915, 934, 999, 1050
TspDTI ATGAA 8 cut(s) 25, 109, 147, 384, 543, 681, 822, 1077
TspGWI ACGGA 2 cut(s) 184, 329
TspRI CASTG 8 cut(s) 585, 726, 777, 864, 915, 934, 999, 1050
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.