AT1G57830

Protein PHLOEM PROTEIN 2-LIKE

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
21420244 .. 21420803
560 bp
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UTR
Exon/CDS
Intron
AT1G57830.1

Sequence Viewer

Length: 507 bp
ATGACAATTTCCATGGTGGCCATTTCTCATATCATCCAGCCTTCGCTGATGCAGTTGCAACCTCGAGTGTTCATCAATTTCCGAGGAGAGGACATTCGCTATGGCTTCATCAGCCACCTCGTTGCTGCCTTTGAAGTACACGGAATATATTTCTTCATTGACAAATACGAACAAAGGGGAAATGACCTTACGTACCTCTTCAAAAGGATCGAGGAGTCGAAGATCGTACTAGCAATCTTTTCTGGGAAATATGCACAATCCAAATGGTGCTTGAATGAACTAGCAACGGTGAAGAAACTAGCAGAAGAAAACAAATTAAAAGTTATTCCCATATTCTACAAGGTGAAAGTTGGTGATGTGAGACGTCAGAAGGGAGAATTTGGTCGTAACTTTTGGAATTTGGCAAGAATTTCAAGTGGTGAGGAGATCAAGCAGTGGAAGGAAGCTTTGGAGTTCGTTTCCCACAAGATGGGCTTAGAACTATGCGAAAACAGGTCTTCTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.61

Weight (kDa)

9.32

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 158 1.6e-35 TIR domain
TIR_2 PF13676 23 - 115 3.7e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018301)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 367
AccB7I CCANNNNNTGG 1 cut(s) 469
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 3 cut(s) 377, 397, 408
AcyI GRCGYC 1 cut(s) 364
AfaI GTAC 3 cut(s) 138, 194, 228
AfiI CCNNNNNNNGG 2 cut(s) 88, 469
AgsI TTSAA 4 cut(s) 134, 202, 274, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 3 cut(s) 377, 397, 408
AsuHPI GGTGA 4 cut(s) 301, 355, 365, 431
AvaI CYCGRG 1 cut(s) 63
BalI TGGCCA 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 3 cut(s) 230, 281, 299
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 63
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 489
BsaAI YACGTR 2 cut(s) 192, 504
BsaHI GRCGYC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 12, 82
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 469
BseDI CCNNGG 2 cut(s) 12, 82
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 88, 469
BseRI GAGGAG 3 cut(s) 99, 227, 437
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 88, 469
BsmAI GTCTC 1 cut(s) 355
BsmBI CGTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 63
Bsp143I GATC 3 cut(s) 207, 222, 426
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 12, 82
BssMI GATC 3 cut(s) 207, 222, 426
BssNI GRCGYC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 364
BstBAI YACGTR 2 cut(s) 192, 504
BstDEI CTNAG 1 cut(s) 475
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 3 cut(s) 210, 225, 429
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 3 cut(s) 207, 222, 426
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstSNI TACGTA 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 489
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 440
Csp6I GTAC 3 cut(s) 137, 193, 227
CviAII CATG 1 cut(s) 13
CviJI RGCY 6 cut(s) 20, 40, 105, 114, 446, 474
CviKI_1 RGCY 6 cut(s) 20, 40, 105, 114, 446, 474
CviQI GTAC 3 cut(s) 137, 193, 227
DdeI CTNAG 1 cut(s) 475
DpnI GATC 3 cut(s) 209, 224, 428
DpnII GATC 3 cut(s) 207, 222, 426
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco105I TACGTA 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 1 cut(s) 16
FaiI YATR 7 cut(s) 14, 30, 102, 148, 252, 332, 484
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 3 cut(s) 230, 281, 299
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 1 cut(s) 215
HphI GGTGA 4 cut(s) 301, 355, 365, 431
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 83, 369
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 51, 364, 433
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 3 cut(s) 191, 364, 503
HpyCH4V TGCA 3 cut(s) 52, 58, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 3 cut(s) 191, 364, 503
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 3 cut(s) 207, 222, 426
LpnPI CCDG 3 cut(s) 50, 228, 478
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 230, 281, 299
MaeII ACGT 3 cut(s) 191, 364, 503
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 209, 224, 428
MboI GATC 3 cut(s) 207, 222, 426
MboII GAAGA 6 cut(s) 145, 190, 232, 304, 317, 489
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 6 cut(s) 6, 76, 314, 377, 397, 408
MluNI TGGCCA 1 cut(s) 20
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 7 cut(s) 72, 77, 82, 128, 205, 206, 415
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 207, 222, 426
NlaIII CATG 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Ppu21I YACGTR 2 cut(s) 192, 504
PspXI VCTCGAGB 1 cut(s) 63
RsaI GTAC 3 cut(s) 138, 194, 228
RsaNI GTAC 3 cut(s) 137, 193, 227
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 207, 222, 426
SchI GAGTC 1 cut(s) 224
SfaNI GCATC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SnaBI TACGTA 1 cut(s) 192
Sse9I AATT 6 cut(s) 6, 76, 314, 377, 397, 408
SspMI CTAG 3 cut(s) 230, 281, 299
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 3 cut(s) 194, 367, 506
TaqI TCGA 3 cut(s) 64, 210, 218
TasI AATT 6 cut(s) 6, 76, 314, 377, 397, 408
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 440
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 4 cut(s) 61, 97, 145, 291
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 440
Van91I CCANNNNNTGG 1 cut(s) 469
XapI RAATTY 3 cut(s) 377, 397, 408
XhoI CTCGAG 1 cut(s) 63
XspI CTAG 3 cut(s) 230, 281, 299
ZraI GACGTC 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.