AT1G09794
TCP Family

cx9C motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018748
Physical Location & Seq
Forward (+)
3171905 .. 3173510
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09794.1

Sequence Viewer

Length: 192 bp
ATGGCGCAACCAAGCAAAGAACCCTGCAAGAAAGAGGCTTGTGACATCCAAGCCTGTCTTTCCAAAAACAATTTTCTTCCTCAAAGGTGCCAGAGAGTGATAGAGATGTTACAGGCATGTTGTGAGAGATGCAATAACGAGTCAACACATTGTGGATCTGTAGCTGCTCTCTTGAAGCAAATCAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTCP1

Protein Analysis

63

Amino Acids

7.07

Weight (kDa)

8.7

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMC4 PF08991 8 - 62 6.2e-16 Cx9C motif-containing protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09794
malus_domestica MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica Prupe.1G576700_v2.0.a1
pyrus_communis pycom08g20830
rosa_chinensis RchiOBHm_Chr7g0220841
rosa_multiflora Rmu_ssc0000286.1_g000018
rosa_roxburghii Rroxscaffold_3G00239000
rosa_rugosa Rorug07G0197100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AclWI GGATC 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AlwI GGATC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 119
BseGI GGATG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 87
BssMI GATC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsCI GGATG 1 cut(s) 45
CfoI GCGC 1 cut(s) 7
CviAII CATG 1 cut(s) 117
CviJI RGCY 3 cut(s) 38, 53, 164
CviKI_1 RGCY 3 cut(s) 38, 53, 164
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
DraIII CACNNNGTG 1 cut(s) 152
FaeI CATG 1 cut(s) 120
FaiI YATR 1 cut(s) 118
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FatI CATG 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 165
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 172, 184
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 27, 132
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 37, 67, 98, 104
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 41, 108
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 70
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 28, 90
NdeII GATC 1 cut(s) 155
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 120
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 155
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 1 cut(s) 149
SetI ASST 2 cut(s) 89, 166
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 159
Sse9I AATT 1 cut(s) 70
TasI AATT 1 cut(s) 70
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 41
XceI RCATGY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.