Prupe.1G576700_v2.0.a1
TCP Family

cx9C motif-containing protein 4

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
46953675 .. 46956343
2669 bp
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UTR
Exon/CDS
Intron
Prupe.1G576700.1

Sequence Viewer

Length: 195 bp
ATGGCGAAGCAAGAAAGCATAGAGCCGTGCAAGAAAGAAGCATGCTACATTCAAGCATGTCTCTCCAAGAACAACTTCCTCCCTCAAAAGTGCATTACAGTCATTGAATTGCTGCAGTCTTGCTGCGAGAAACACAATTACAATTCGACTCACTGTGCTTCGCTCTCTGGTCTTTTGAAGCAAAAGCCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.22

Weight (kDa)

8.73

Isoelectric Point (pI)

79.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09794
malus_domestica MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica Prupe.1G576700_v2.0.a1
pyrus_communis pycom08g20830
rosa_chinensis RchiOBHm_Chr7g0220841
rosa_multiflora Rmu_ssc0000286.1_g000018
rosa_roxburghii Rroxscaffold_3G00239000
rosa_rugosa Rorug07G0197100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 53, 107, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
Alw26I GTCTC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 112, 123
Asp700I GAANNNNTTC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 99, 110
BceAI ACGGC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 113, 124
BlsI GCNGC 2 cut(s) 114, 125
BseXI GCAGC 2 cut(s) 99, 110
BsmAI GTCTC 1 cut(s) 65
BspMAI CTGCAG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 100, 155
BstC8I GCNNGC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 65
BstNSI RCATGY 2 cut(s) 45, 60
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 99, 110
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 43
CviAII CATG 2 cut(s) 42, 57
CviJI RGCY 2 cut(s) 25, 187
CviKI_1 RGCY 2 cut(s) 25, 187
FaeI CATG 2 cut(s) 45, 60
FaiI YATR 3 cut(s) 20, 43, 58
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 2 cut(s) 41, 56
Fnu4HI GCNGC 2 cut(s) 113, 124
Fsp4HI GCNGC 2 cut(s) 113, 124
FspEI CC 6 cut(s) 39, 79, 92, 95, 96, 153
GluI GCNGC 2 cut(s) 113, 124
Hin1II CATG 2 cut(s) 45, 60
HinfI GANTC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 100, 155
HpyCH4V TGCA 3 cut(s) 30, 93, 115
Hsp92II CATG 2 cut(s) 45, 60
LpnPI CCDG 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 99, 110
MluCI AATT 3 cut(s) 107, 136, 142
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 2 cut(s) 89, 93
MroXI GAANNNNTTC 1 cut(s) 74
NlaIII CATG 2 cut(s) 45, 60
NspI RCATGY 2 cut(s) 45, 60
PaeI GCATGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 114, 125
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 117
SatI GCNGC 2 cut(s) 113, 124
SchI GAGTC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 113
SphI GCATGC 1 cut(s) 45
Sse9I AATT 3 cut(s) 107, 136, 142
TaaI ACNGT 2 cut(s) 100, 155
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 107, 136, 142
TscAI CASTG 1 cut(s) 158
TseI GCWGC 2 cut(s) 112, 123
TspRI CASTG 1 cut(s) 158
XceI RCATGY 2 cut(s) 45, 60
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.