MD15G1432800.v1.1
TCP Family

cx9C motif-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0018748
Physical Location & Seq
Forward (+)
53313471 .. 53316278
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1432800.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGCCCGGCAAGAAAGCAAAGAGCCGTGCAAGAAAGAAGCCTGCAACATTCAAGCATGCCTCTCCAAGAACAACTTCCTTCCTCAAAAGTGCTGGAAAGTCATTGAACAGCTGCAGGCGTGCTGCGAGAAATGCACTTACAACTCAACACACTGTGCTTCAGTCTCTGGTCTTTTGAAGCAAAAGCCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTCP1

Protein Analysis

65

Amino Acids

7.25

Weight (kDa)

9.0

Isoelectric Point (pI)

80.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMC4 PF08991 9 - 62 1e-15 Cx9C motif-containing protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09794
malus_domestica MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica Prupe.1G576700_v2.0.a1
pyrus_communis pycom08g20830
rosa_chinensis RchiOBHm_Chr7g0220841
rosa_multiflora Rmu_ssc0000286.1_g000018
rosa_roxburghii Rroxscaffold_3G00239000
rosa_rugosa Rorug07G0197100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 53, 107, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 112, 123
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 7
BbvI GCAGC 2 cut(s) 99, 110
BceAI ACGGC 1 cut(s) 10
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 113, 124
BlsI GCNGC 2 cut(s) 114, 125
Bme1390I CCNGG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 99, 110
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 43, 58, 117, 121
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 99, 110
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 4 cut(s) 43, 58, 117, 121
CaiI CAGNNNCTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 57
CviJI RGCY 5 cut(s) 5, 25, 41, 112, 187
CviKI_1 RGCY 5 cut(s) 5, 25, 41, 112, 187
DraIII CACNNNGTG 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 144
FaeI CATG 1 cut(s) 60
FaiI YATR 1 cut(s) 58
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 113, 124
Fsp4HI GCNGC 2 cut(s) 113, 124
GluI GCNGC 2 cut(s) 113, 124
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 60
HpaII CCGG 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 30, 45, 115, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 60
LpnPI CCDG 5 cut(s) 20, 55, 79, 101, 153
Lsp1109I GCAGC 2 cut(s) 99, 110
MnlI CCTC 2 cut(s) 71, 93
MroXI GAANNNNTTC 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 7
NlaIII CATG 1 cut(s) 60
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 114, 125
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 112
SatI GCNGC 2 cut(s) 113, 124
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 7
SetI ASST 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 113
SphI GCATGC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 155
TscAI CASTG 1 cut(s) 158
TseI GCWGC 2 cut(s) 112, 123
TspRI CASTG 1 cut(s) 158
XceI RCATGY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.