RchiOBHm_Chr7g0220841
TCP Family

cx9C motif-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018748
Physical Location & Seq
Forward (+)
41723774 .. 41724915
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19764

Sequence Viewer

Length: 207 bp
ATGGGAAAGCAGCAGAGCAAAGAGAAAGAGATGGAGCCGTGTAAGAAAGAAGCATGCTTAATCCAGGCATGTCTCTCCAAGAATGACTTCCTCCCTCACAAGTGCCTTAAAGTTATTGAAATGTTGCAGTCTTGCTGCGAAAAATGTAATTACGACTCGACACACTGCGCTTCTCTTTCTGGTCTTCTGAAACAAAAACCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTCP1

Protein Analysis

68

Amino Acids

7.71

Weight (kDa)

8.65

Isoelectric Point (pI)

77.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMC4 PF08991 13 - 66 2.7e-14 Cx9C motif-containing protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09794
malus_domestica MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica Prupe.1G576700_v2.0.a1
pyrus_communis pycom08g20830
rosa_chinensis RchiOBHm_Chr7g0220841
rosa_multiflora Rmu_ssc0000286.1_g000018
rosa_roxburghii Rroxscaffold_3G00239000
rosa_rugosa Rorug07G0197100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 10, 135
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 22, 122
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 2 cut(s) 11, 136
BlsI GCNGC 2 cut(s) 12, 137
Bme1390I CCNGG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 176
BseBI CCWGG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 22, 122
BsmAI GTCTC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 55
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 2 cut(s) 57, 72
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 22, 122
BstV2I GAAGAC 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 170
CviAII CATG 2 cut(s) 54, 69
CviJI RGCY 1 cut(s) 37
CviKI_1 RGCY 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 57, 72
FaiI YATR 2 cut(s) 55, 70
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FatI CATG 2 cut(s) 53, 68
Fnu4HI GCNGC 2 cut(s) 11, 136
Fsp4HI GCNGC 2 cut(s) 11, 136
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 11, 136
HhaI GCGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 57, 72
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 127
Hsp92II CATG 2 cut(s) 57, 72
HspAI GCGC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 50, 77, 165
Lsp1109I GCAGC 2 cut(s) 22, 122
MboII GAAGA 1 cut(s) 176
MluCI AATT 1 cut(s) 148
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 101, 105
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 59, 108
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
NlaIII CATG 2 cut(s) 57, 72
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 2 cut(s) 57, 72
PaeI GCATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 12, 137
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 59, 108
SatI GCNGC 2 cut(s) 11, 136
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 65
SphI GCATGC 1 cut(s) 57
Sse9I AATT 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 63
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 148
Tru1I TTAA 2 cut(s) 59, 108
Tru9I TTAA 2 cut(s) 59, 108
TscAI CASTG 1 cut(s) 170
TseI GCWGC 2 cut(s) 10, 135
TspRI CASTG 1 cut(s) 170
XceI RCATGY 2 cut(s) 57, 72
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.