Rmu_ssc0000286.1_g000018
TCP Family

cx9C motif-containing protein 4

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000286.1
Physical Location & Seq
Reverse (-)
119275 .. 120359
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000286.1_g000018.1.cds

Sequence Viewer

Length: 213 bp
atggagatgggaaagcagcagagcaaagagaaagagatggagccgtgtaagaaagaagcatgcttaattcaggcatgtctctccaagaatgacttcctccctcacaagtgccttaaagttattcaaatgttgcagtcttgctgcgaaaaatgtaattacgactcgacacactgcgcttctctttctggtcttctgaaacaaaaacccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.97

Weight (kDa)

8.65

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09794
malus_domestica MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica Prupe.1G576700_v2.0.a1
pyrus_communis pycom08g20830
rosa_chinensis RchiOBHm_Chr7g0220841
rosa_multiflora Rmu_ssc0000286.1_g000018
rosa_roxburghii Rroxscaffold_3G00239000
rosa_rugosa Rorug07G0197100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
Alw26I GTCTC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 16, 141
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 28, 128
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 83
BisI GCNGC 2 cut(s) 17, 142
BlsI GCNGC 2 cut(s) 18, 143
BmiI GGNNCC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 182
BseXI GCAGC 2 cut(s) 28, 128
BsmAI GTCTC 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 61
BstHHI GCGC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 63, 78
BstV1I GCAGC 2 cut(s) 28, 128
BstV2I GAAGAC 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 176
CviAII CATG 2 cut(s) 60, 75
CviJI RGCY 1 cut(s) 43
CviKI_1 RGCY 1 cut(s) 43
FaeI CATG 2 cut(s) 63, 78
FaiI YATR 2 cut(s) 61, 76
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 2 cut(s) 59, 74
Fnu4HI GCNGC 2 cut(s) 17, 142
Fsp4HI GCNGC 2 cut(s) 17, 142
FspEI CC 9 cut(s) 23, 56, 57, 97, 110, 113, 114, 125, 171
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 17, 142
HhaI GCGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 63, 78
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 133
Hsp92II CATG 2 cut(s) 63, 78
HspAI GCGC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 2 cut(s) 56, 171
Lsp1109I GCAGC 2 cut(s) 28, 128
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 66, 154
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 2 cut(s) 107, 111
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 65, 114
NlaIII CATG 2 cut(s) 63, 78
NlaIV GGNNCC 1 cut(s) 42
NspI RCATGY 2 cut(s) 63, 78
PaeI GCATGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 18, 143
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 65, 114
SatI GCNGC 2 cut(s) 17, 142
SchI GAGTC 1 cut(s) 155
SgeI CNNG 9 cut(s) 57, 72, 83, 87, 97, 118, 150, 175, 198
SphI GCATGC 1 cut(s) 63
Sse9I AATT 2 cut(s) 66, 154
TaqI TCGA 1 cut(s) 164
TasI AATT 2 cut(s) 66, 154
Tru1I TTAA 2 cut(s) 65, 114
Tru9I TTAA 2 cut(s) 65, 114
TscAI CASTG 1 cut(s) 176
TseI GCWGC 2 cut(s) 16, 141
TspRI CASTG 1 cut(s) 176
XceI RCATGY 2 cut(s) 63, 78
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.