MD08G1240200.v1.1
TCP Family

cx9C motif-containing protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0018748
Physical Location & Seq
Forward (+)
30646334 .. 30649309
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1240200.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGTGCAGCAAGAAAGCAAGGAGCCGTGCAAGAAAGAAGCCTGCTACATTCAAGCATGCCTCTCCAAGAACAACTTCCTCCCGGAAAAGTGCCTGAAATTCATTGAACAGCTGCAGGCGTGCTGCGAGAAATGCAATTACAACTCAAAACACTGTGCTTCTGTCTCTAGTCTTTTGAAGCAAAAGCACCGTCAGATTCACACCCAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTCP1

Protein Analysis

72

Amino Acids

8.25

Weight (kDa)

8.44

Isoelectric Point (pI)

68.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMC4 PF08991 9 - 64 2.3e-14 Cx9C motif-containing protein 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09794
malus_domestica MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica Prupe.1G576700_v2.0.a1
pyrus_communis pycom08g20830
rosa_chinensis RchiOBHm_Chr7g0220841
rosa_multiflora Rmu_ssc0000286.1_g000018
rosa_roxburghii Rroxscaffold_3G00239000
rosa_rugosa Rorug07G0197100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 98
AgsI TTSAA 3 cut(s) 53, 107, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 7, 112, 123
ApoI RAATTY 1 cut(s) 98
ArsI GACNNNNNNTTYG 2 cut(s) 175, 207
Asp700I GAANNNNTTC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 83
BbvI GCAGC 3 cut(s) 19, 99, 110
BceAI ACGGC 1 cut(s) 10
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 3 cut(s) 8, 113, 124
BlsI GCNGC 3 cut(s) 9, 114, 125
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 19, 99, 110
BsgI GTGCAG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 155, 191
BstC8I GCNNGC 4 cut(s) 43, 58, 117, 121
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 19, 99, 110
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 4 cut(s) 43, 58, 117, 121
CviAII CATG 1 cut(s) 57
CviJI RGCY 3 cut(s) 25, 41, 112
CviKI_1 RGCY 3 cut(s) 25, 41, 112
FaeI CATG 1 cut(s) 60
FaiI YATR 1 cut(s) 58
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 1 cut(s) 56
Fnu4HI GCNGC 3 cut(s) 8, 113, 124
Fsp4HI GCNGC 3 cut(s) 8, 113, 124
FspBI CTAG 1 cut(s) 168
GluI GCNGC 3 cut(s) 8, 113, 124
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 60
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 155, 191
HpyCH4V TGCA 4 cut(s) 7, 30, 115, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 60
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 55, 96, 101, 107
Lsp1109I GCAGC 3 cut(s) 19, 99, 110
MaeI CTAG 1 cut(s) 168
MluCI AATT 2 cut(s) 98, 136
MnlI CCTC 2 cut(s) 71, 89
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 83
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 3 cut(s) 9, 114, 125
PspN4I GGNNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 117
PvuII CAGCTG 1 cut(s) 112
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 3 cut(s) 8, 113, 124
ScrFI CCNGG 1 cut(s) 83
SetI ASST 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 113
SphI GCATGC 1 cut(s) 60
Sse9I AATT 2 cut(s) 98, 136
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 155, 191
TasI AATT 2 cut(s) 98, 136
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TscAI CASTG 1 cut(s) 158
TseI GCWGC 3 cut(s) 7, 112, 123
TspDTI ATGAA 1 cut(s) 91
TspRI CASTG 1 cut(s) 158
XapI RAATTY 1 cut(s) 98
XceI RCATGY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.