Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018748

Physical Location & Seq

Genomic Coordinates Reverse (-)

27676750 .. 27677643

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGGAAAGCAGCAGAGCAAAGAGAAAGAGATGGAGCCGTGTAAGAAAGAAGCATGCTTAATTCAGGCGTGTCTCTCCAAGAATGACTTCCTCCCTCACAAGTGCCTTAAAGTTATTGAAATGTTGCAGTCTTGCTGCGAAAAATGTAATTACGACTCGACACACTGTGCTTCTCTTTCTGGTCTTCTGAAACAAAAACCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTCP1

Protein Analysis

68

Amino Acids

7.71

Weight (kDa)

8.65

Isoelectric Point (pI)

77.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMC4	PF08991	13 - 66	2.7e-14	Cx9C motif-containing protein 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0018748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09794
malus_domestica	MD08G1240200.v1.1 MD15G1432800.v1.1
prunus_persica	Prupe.1G576700_v2.0.a1
pyrus_communis	pycom08g20830
rosa_chinensis	RchiOBHm_Chr7g0220841
rosa_multiflora	Rmu_ssc0000286.1_g000018
rosa_roxburghii	Rroxscaffold_3G00239000
rosa_rugosa	Rorug07G0197100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	119
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	10, 135
Asp700I	GAANNNNTTC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	22, 122
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	11, 136
BlsI	GCNGC	2 cut(s)	12, 137
BmiI	GGNNCC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	22, 122
BsmAI	GTCTC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	22, 122
BstV2I	GAAGAC	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	55
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	1 cut(s)	37
CviKI_1	RGCY	1 cut(s)	37
DraIII	CACNNNGTG	1 cut(s)	167
FaeI	CATG	1 cut(s)	57
FaiI	YATR	1 cut(s)	55
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	11, 136
Fsp4HI	GCNGC	2 cut(s)	11, 136
FspEI	CC	9 cut(s)	17, 50, 51, 91, 104, 107, 108, 119, 165
GluI	GCNGC	2 cut(s)	11, 136
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	189
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	2 cut(s)	50, 165
Lsp1109I	GCAGC	2 cut(s)	22, 122
MboII	GAAGA	1 cut(s)	176
MluCI	AATT	2 cut(s)	60, 148
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	2 cut(s)	101, 105
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	59, 108
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	12, 137
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	59, 108
SatI	GCNGC	2 cut(s)	11, 136
SchI	GAGTC	1 cut(s)	149
SgeI	CNNG	9 cut(s)	51, 66, 77, 81, 91, 112, 144, 169, 192
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	2 cut(s)	60, 148
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	60, 148
Tru1I	TTAA	2 cut(s)	59, 108
Tru9I	TTAA	2 cut(s)	59, 108
TscAI	CASTG	1 cut(s)	170
TseI	GCWGC	2 cut(s)	10, 135
TspRI	CASTG	1 cut(s)	170
XceI	RCATGY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.