AT1G09870

Belongs to the histidine acid phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012909
Physical Location & Seq
Forward (+)
3205579 .. 3208714
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09870.1

Sequence Viewer

Length: 1464 bp
ATGGCGACGAAGACTGTTTGGATCATACTGTTGTGTCTATTTGTTGTTTCCCAGGCAGATCAGGGTTTCGATGTTCGTCATCACCTCTCCACCGTCACCAGATACTCTACTTCGAAAGATGTTACCCAAAATTTGATTGAAGGGTCGAATGTTCCTAGTGAGTGTACACCTATCCACCTTAACCTTGTGGCTAGGCATGGAACTCGTTCTCCGACCAAGAAACGATTGCGGGAATTGGAAAGTTTGGCTGGTAGGTTTAAGGAACTGGTAAGAGATGCAGAAGCTAGGAAATTGCCTTCAGACAAAATTCCTGGATGGTTGGGACAATGGAAATCTCCTTGGGAAGGAAAAGTGAAAGGTGGGGAGCTGATCAGGCAAGGGGAGGATGAGTTATACCAACTGGGAATTCGGGTTCGGGAACGGTTTCCTAGTTTGTTTGAAGAGGATTACCATCCTGATGTCTATACAATAAGAGCTACGCAGATTCCTAGGGCATCTGCAAGTGCTGTAGCATTTGGAATGGGGTTATTCAGTGAGAAAGGAAATCTGGGACCAGGCCGTAATAGAGCATTCGCTGTCACTAGCGAAAACCGTGCCAGTGATACAAAGTTGAGATTTTTTGAATGTTGTCAAAACTACAAGAGCTATAGAAAAGCTAAAGAGCCTGCTGTGGATAAGCTCAAGGAACCTGTTCTGAATAAAATTACAGCTTCCGTTGCAAAGAGATATGATTTAAAATTCACGAAACAGGACATTTCTTCTCTCTGGTTTCTGTGCAAGCAGGAAGCATCATTGCTTAATGTAACTAATCAAAGTTGTGAACTTTTCACGCCATCAGAGGTTGCTTTGCTGGAATGGACAGATGATTTGGAAGTGTTTCTCCTCAAAGGTTATGGAAATTCCTTGAATTACAAAATGGGAGTTCCACTTCTAGAAGATGTTTTGCATTCAATGGAAGAAGCTATCAAGGCCCGGGAAGAAAAGCTCCCACCTGGAAGTTACGAAAAAGCAAGGCTTAGGTTTGCACATGCCGAAACAATAGTTCCCTTTTCTTGTCTTCTTGGGCTTTTCCTTGATGGATCTGAGTTTGAGAAAATACAGAAGGAGAAACCTTTGGAACTCCCTCCACAGCCTCCCAAAACCAGGGATTTTAGAGGCAGCACCATGGCTCCTTTTGGTGGGAACAACATTCTTGTCCTATACAGTTGTCCCGCAGAATCCTCTCCCAAATACTTCGTTCAGGTTCTGCACAATGAGCATCCTATTGCAGTGCCAGGTTGTGATGGAAAAGATTTCTGTCCTCTTGAAGATTTCAAGGCCAAAGTGGTAACTCCTCATCTAAAGCATGCTTTTGACAACCTTTGCAATGCTGATCTAAATGACCTGAAACAGAAGCCTGCATCAAGTAAGTTATCTATACTGTCAAGTTGGCTGTTTGGGTCAAGCCACGATACCGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00562 ko01100 map00010 map00562 map01100
Pfam Domains
Protein Families
His_Phos_2

Protein Analysis

487

Amino Acids

54.85

Weight (kDa)

8.17

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_2 PF00328 59 - 418 3.3e-57 Histidine phosphatase superfamily (branch 2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09870
fragaria_vesca FvH4_7g25060 FvH4_7g25060
malus_domestica MD01G1157500.v1.1
prunus_persica Prupe.2G255400_v2.0.a1 Prupe.2G255400_v2.0.a1
pyrus_communis pycom01g17420
rosa_chinensis RchiOBHm_Chr1g0370931
rosa_laevigata RLG00000026998
rosa_multiflora Rmu_sc0001018.1_g000003
rosa_roxburghii Rroxscaffold_4G00286120
rosa_rugosa Rorug01G0360200 Rorug01G0360200
rosa_samantha Rh1AG370300 Rh1BG333900 Rh1CG347200 Rh1DG365100
rosa_wichuraiana Rw1G032590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 229, 1212
AclWI GGATC 2 cut(s) 29, 1087
AcsI RAATTY 5 cut(s) 130, 306, 405, 737, 898
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 344, 1143, 1178
AgsI TTSAA 7 cut(s) 140, 440, 623, 907, 951, 1307, 1315
AjnI CCWGG 6 cut(s) 51, 310, 553, 991, 1142, 1273
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AloI GAACNNNNNNTCC 4 cut(s) 193, 225, 396, 428
Alw21I GWGCWC 1 cut(s) 1461
AlwI GGATC 2 cut(s) 29, 1087
AlwNI CAGNNNCTG 1 cut(s) 1246
Ama87I CYCGRG 1 cut(s) 972
AoxI GGCC 3 cut(s) 556, 969, 1317
ApeKI GCWGC 1 cut(s) 1158
ApoI RAATTY 5 cut(s) 130, 306, 405, 737, 898
ArsI GACNNNNNNTTYG 2 cut(s) 850, 882
Asp700I GAANNNNTTC 4 cut(s) 205, 423, 690, 876
AspA2I CCTAGG 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 551, 970
AsuC2I CCSGG 2 cut(s) 973, 974
AsuHPI GGTGA 2 cut(s) 74, 88
AsuII TTCGAA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 972
AvaII GGWCC 1 cut(s) 551
AvrII CCTAGG 1 cut(s) 488
BanII GRGCYC 1 cut(s) 1461
BbsI GAAGAC 2 cut(s) 17, 1049
Bbv12I GWGCWC 1 cut(s) 1461
BbvI GCAGC 1 cut(s) 1170
BccI CCATC 5 cut(s) 309, 459, 841, 1070, 1277
BceAI ACGGC 1 cut(s) 543
BcgI CGANNNNNNTGC 4 cut(s) 185, 219, 575, 609
BciT130I CCWGG 6 cut(s) 53, 312, 555, 993, 1144, 1275
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 2 cut(s) 973, 974
BfaI CTAG 8 cut(s) 156, 192, 285, 429, 489, 582, 932, 1462
BfmI CTRYAG 2 cut(s) 507, 646
BisI GCNGC 1 cut(s) 1159
BlnI CCTAGG 1 cut(s) 488
BlsI GCNGC 1 cut(s) 1160
Bme1390I CCNGG 8 cut(s) 53, 312, 555, 973, 974, 993, 1144, 1275
Bme18I GGWCC 1 cut(s) 551
BmeT110I CYCGRG 1 cut(s) 972
BmgT120I GGNCC 2 cut(s) 551, 970
BmiI GGNNCC 3 cut(s) 552, 687, 1170
BmrFI CCNGG 8 cut(s) 53, 312, 555, 973, 974, 993, 1144, 1275
BmrI ACTGGG 1 cut(s) 410
BmsI GCATC 5 cut(s) 265, 503, 797, 1267, 1409
BmuI ACTGGG 1 cut(s) 410
BpiI GAAGAC 2 cut(s) 17, 1049
Bpu10I CCTNAGC 1 cut(s) 1016
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 2 cut(s) 973, 974
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 6 cut(s) 51, 338, 488, 972, 1143, 1164
BsaXI ACNNNNNCTCC 6 cut(s) 193, 223, 374, 404, 1153, 1183
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 1143, 1178
Bse1I ACTGG 3 cut(s) 270, 405, 597
Bse3DI GCAATG 2 cut(s) 791, 1372
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 6 cut(s) 53, 312, 555, 993, 1144, 1275
BseDI CCNNGG 6 cut(s) 51, 338, 488, 972, 1143, 1164
BseGI GGATG 4 cut(s) 320, 391, 451, 1258
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 3 cut(s) 344, 1143, 1178
BseMI GCAATG 2 cut(s) 791, 1372
BseMII CTCAG 1 cut(s) 1074
BseNI ACTGG 3 cut(s) 270, 405, 597
BseRI GAGGAG 2 cut(s) 872, 1323
BseXI GCAGC 1 cut(s) 1170
BsgI GTGCAG 1 cut(s) 1232
BshFI GGCC 3 cut(s) 558, 971, 1319
BsiHKAI GWGCWC 1 cut(s) 1461
BsiHKCI CYCGRG 1 cut(s) 972
BsiSI CCGG 1 cut(s) 973
BslFI GGGAC 3 cut(s) 336, 564, 1194
BslI CCNNNNNNNGG 3 cut(s) 344, 1143, 1178
BsmFI GGGAC 3 cut(s) 336, 564, 1194
BsmI GAATGC 2 cut(s) 569, 946
BsnI GGCC 3 cut(s) 558, 971, 1319
BsoBI CYCGRG 1 cut(s) 972
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 1461
Bsp1407I TGTACA 1 cut(s) 164
Bsp143I GATC 5 cut(s) 21, 58, 369, 1079, 1372
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 2 cut(s) 229, 1212
BspANI GGCC 3 cut(s) 558, 971, 1319
BspCNI CTCAG 1 cut(s) 1075
BspLI GGNNCC 3 cut(s) 552, 687, 1170
BspPI GGATC 2 cut(s) 29, 1087
BspT104I TTCGAA 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 791, 1372
BsrGI TGTACA 1 cut(s) 164
BsrI ACTGG 3 cut(s) 270, 405, 597
BssECI CCNNGG 6 cut(s) 51, 338, 488, 972, 1143, 1164
BssMI GATC 5 cut(s) 21, 58, 369, 1079, 1372
BssT1I CCWWGG 3 cut(s) 338, 488, 1164
Bst2UI CCWGG 6 cut(s) 53, 312, 555, 993, 1144, 1275
Bst4CI ACNGT 7 cut(s) 16, 30, 94, 423, 593, 1205, 1422
Bst6I CTCTTC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 4 cut(s) 666, 779, 1347, 1398
BstDEI CTNAG 2 cut(s) 1016, 1083
BstDSI CCRYGG 1 cut(s) 1164
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 4 cut(s) 320, 391, 451, 1258
BstKTI GATC 5 cut(s) 24, 61, 372, 1082, 1375
BstMBI GATC 5 cut(s) 21, 58, 369, 1079, 1372
BstMWI GCNNNNNNNGC 4 cut(s) 373, 716, 968, 1255
BstNI CCWGG 6 cut(s) 53, 312, 555, 993, 1144, 1275
BstNSI RCATGY 2 cut(s) 1031, 1349
BstSCI CCNGG 8 cut(s) 51, 310, 553, 971, 972, 991, 1142, 1273
BstSFI CTRYAG 2 cut(s) 507, 646
BstV1I GCAGC 1 cut(s) 1170
BstV2I GAAGAC 2 cut(s) 17, 1049
BstX2I RGATCY 1 cut(s) 1079
BstYI RGATCY 1 cut(s) 1079
BsuRI GGCC 3 cut(s) 558, 971, 1319
BtgI CCRYGG 1 cut(s) 1164
BtsCI GGATG 4 cut(s) 320, 391, 451, 1258
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 3 cut(s) 538, 604, 1275
Cac8I GCNNGC 4 cut(s) 666, 779, 1347, 1398
CaiI CAGNNNCTG 1 cut(s) 1246
Cfr13I GGNCC 2 cut(s) 551, 970
Cfr9I CCCGGG 1 cut(s) 972
Csp6I GTAC 1 cut(s) 165
CviAII CATG 4 cut(s) 197, 1028, 1165, 1346
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 1016, 1083
DpnI GATC 5 cut(s) 23, 60, 371, 1081, 1374
DpnII GATC 5 cut(s) 21, 58, 369, 1079, 1372
DraI TTTAAA 1 cut(s) 735
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 1459
Eco130I CCWWGG 3 cut(s) 338, 488, 1164
Eco24I GRGCYC 1 cut(s) 1461
Eco47I GGWCC 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 1459
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 972
EcoICRI GAGCTC 1 cut(s) 1459
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 405
EcoRII CCWGG 6 cut(s) 51, 310, 553, 991, 1142, 1273
EcoT14I CCWWGG 3 cut(s) 338, 488, 1164
EcoT38I GRGCYC 1 cut(s) 1461
ErhI CCWWGG 3 cut(s) 338, 488, 1164
FaeI CATG 4 cut(s) 200, 1031, 1168, 1349
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FaqI GGGAC 3 cut(s) 336, 564, 1194
FatI CATG 4 cut(s) 196, 1027, 1164, 1345
FauI CCCGC 2 cut(s) 222, 1219
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 1159
FokI GGATG 4 cut(s) 327, 398, 438, 1245
FriOI GRGCYC 1 cut(s) 1461
Fsp4HI GCNGC 1 cut(s) 1159
FspBI CTAG 8 cut(s) 156, 192, 285, 429, 489, 582, 932, 1462
GluI GCNGC 1 cut(s) 1159
HaeIII GGCC 3 cut(s) 558, 971, 1319
HapII CCGG 1 cut(s) 973
Hin1II CATG 4 cut(s) 200, 1031, 1168, 1349
HinfI GANTC 2 cut(s) 484, 1217
HpaII CCGG 1 cut(s) 973
HphI GGTGA 2 cut(s) 74, 88
Hpy166II GTNNAC 3 cut(s) 165, 167, 821
Hpy188I TCNGA 5 cut(s) 213, 301, 696, 838, 1084
Hpy188III TCNNGA 5 cut(s) 416, 455, 742, 932, 1304
Hpy8I GTNNAC 3 cut(s) 165, 167, 821
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 4 cut(s) 134, 306, 338, 1096
HpyCH4III ACNGT 7 cut(s) 16, 30, 94, 423, 593, 1205, 1422
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 716, 968, 1255
HpyF3I CTNAG 2 cut(s) 1016, 1083
Hsp92II CATG 4 cut(s) 200, 1031, 1168, 1349
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 5 cut(s) 21, 58, 369, 1079, 1372
LmnI GCTCC 3 cut(s) 364, 990, 1174
Lsp1109I GCAGC 1 cut(s) 1170
LweI GCATC 5 cut(s) 265, 503, 797, 1267, 1409
MaeI CTAG 8 cut(s) 156, 192, 285, 429, 489, 582, 932, 1462
MaeIII GTNAC 6 cut(s) 94, 121, 577, 802, 998, 1327
MalI GATC 5 cut(s) 23, 60, 371, 1081, 1374
MboI GATC 5 cut(s) 21, 58, 369, 1079, 1372
MboII GAAGA 8 cut(s) 22, 452, 750, 947, 968, 989, 1049, 1319
MflI RGATCY 1 cut(s) 1079
MhlI GDGCHC 1 cut(s) 1461
MluCI AATT 9 cut(s) 130, 233, 290, 306, 405, 702, 737, 898, 907
MmeI TCCRAC 1 cut(s) 236
MroXI GAANNNNTTC 4 cut(s) 205, 423, 690, 876
MseI TTAA 4 cut(s) 180, 258, 734, 798
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 1 cut(s) 973
MspR9I CCNGG 8 cut(s) 53, 312, 555, 973, 974, 993, 1144, 1275
Mva1269I GAATGC 2 cut(s) 569, 946
MvaI CCWGG 6 cut(s) 53, 312, 555, 993, 1144, 1275
MwoI GCNNNNNNNGC 4 cut(s) 373, 716, 968, 1255
NciI CCSGG 2 cut(s) 973, 974
NcoI CCATGG 1 cut(s) 1164
NdeII GATC 5 cut(s) 21, 58, 369, 1079, 1372
NlaIII CATG 4 cut(s) 200, 1031, 1168, 1349
NlaIV GGNNCC 3 cut(s) 552, 687, 1170
NmuCI GTSAC 2 cut(s) 94, 577
NspI RCATGY 2 cut(s) 1031, 1349
NspV TTCGAA 1 cut(s) 113
PaeI GCATGC 1 cut(s) 1349
PctI GAATGC 2 cut(s) 569, 946
PdmI GAANNNNTTC 4 cut(s) 205, 423, 690, 876
PfeI GAWTC 2 cut(s) 484, 1217
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 1 cut(s) 1160
Psp124BI GAGCTC 1 cut(s) 1461
Psp6I CCWGG 6 cut(s) 51, 310, 553, 991, 1142, 1273
PspGI CCWGG 6 cut(s) 51, 310, 553, 991, 1142, 1273
PspN4I GGNNCC 3 cut(s) 552, 687, 1170
PspPI GGNCC 2 cut(s) 551, 970
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 1 cut(s) 1079
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 456
SacI GAGCTC 1 cut(s) 1461
SaqAI TTAA 4 cut(s) 180, 258, 734, 798
SatI GCNGC 1 cut(s) 1159
Sau3AI GATC 5 cut(s) 21, 58, 369, 1079, 1372
Sau96I GGNCC 2 cut(s) 551, 970
ScrFI CCNGG 8 cut(s) 53, 312, 555, 973, 974, 993, 1144, 1275
SduI GDGCHC 1 cut(s) 1461
SfaNI GCATC 5 cut(s) 265, 503, 797, 1267, 1409
SfcI CTRYAG 2 cut(s) 507, 646
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 1 cut(s) 551
SmaI CCCGGG 1 cut(s) 974
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SphI GCATGC 1 cut(s) 1349
Sse9I AATT 9 cut(s) 130, 233, 290, 306, 405, 702, 737, 898, 907
SsiI CCGC 2 cut(s) 229, 1212
SspMI CTAG 8 cut(s) 156, 192, 285, 429, 489, 582, 932, 1462
SstI GAGCTC 1 cut(s) 1461
StyD4I CCNGG 8 cut(s) 51, 310, 553, 971, 972, 991, 1142, 1273
StyI CCWWGG 3 cut(s) 338, 488, 1164
TaaI ACNGT 7 cut(s) 16, 30, 94, 423, 593, 1205, 1422
TaqI TCGA 3 cut(s) 69, 113, 146
TasI AATT 9 cut(s) 130, 233, 290, 306, 405, 702, 737, 898, 907
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 2 cut(s) 484, 1217
Tru1I TTAA 4 cut(s) 180, 258, 734, 798
Tru9I TTAA 4 cut(s) 180, 258, 734, 798
TscAI CASTG 3 cut(s) 538, 604, 1275
TseFI GTSAC 2 cut(s) 94, 577
TseI GCWGC 1 cut(s) 1158
Tsp45I GTSAC 2 cut(s) 94, 577
TspGWI ACGGA 1 cut(s) 703
TspMI CCCGGG 1 cut(s) 972
TspRI CASTG 3 cut(s) 538, 604, 1275
VpaK11BI GGWCC 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 5 cut(s) 130, 306, 405, 737, 898
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 2 cut(s) 1031, 1349
XmaI CCCGGG 1 cut(s) 972
XmaJI CCTAGG 1 cut(s) 488
XmnI GAANNNNTTC 4 cut(s) 205, 423, 690, 876
XspI CTAG 8 cut(s) 156, 192, 285, 429, 489, 582, 932, 1462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.