Rmu_sc0001018.1_g000003

Belongs to the histidine acid phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001018.1
OG0012909
Physical Location & Seq
Reverse (-)
8371 .. 12255
3885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001018.1_g000003.1.cds

Sequence Viewer

Length: 1434 bp
atggttagggctaagcttctcattctgctagtattgttctcagtgctcttcgtccattcaaatgccggagaagaagaagaagaagctttcgacgttcgccaacacctttcttctgtgtccagatataaagacgtcgccggcaattcatttgtagcatctgaaattccagatggatgcactcccattcacttgaatcttgtggcaaggcatggaactcgttctcctacaaagaaacggatgaaggagttggacaacctggcagctcgtctggcttcgttagtgaaagaagcagaagaacagaagctgcctttgcaaaaccttcctggttggttaaaggaatgggagtcgccttggaagggaaaacaaaatggtggacaattgactgcccagggagaggaagagctttatgaactgggaattaggactagagaaagatttccaaatctgtttgatgaggactaccatccaaatgtttatcccatcaagtcttctcagatccctcgggcgtcagccagtgctgtggcatttggcatggggttgttcagtggcaaaggaaatcttgggccaggcaaacatcgtgcttttgccgtcaccagtgaaagccgtgcgagtgacatagtgctgaggtttcatgattgttgcaataactacaaggactatcggaaaagtcaggagccatctgttaataaacttaaggaaccagtcattgacgaaattacttctgcattaactaagcgctacaagttgaacttcacaaggcaggacacgtcttctctctggtttctttgcaaacaggaggcttccttgttgaatgtaactgatcaagcttgtgcgcttttcaacccctctgaggttgctttgctggagtggacagatgatttggaggcctttatattaaagggttatggtaaagctttgaactatagaatgggggtgcccttgctaaaagatgttgtccaatctatggaccaggctattgaggcccacaaagaaaaacatgctcctggtacttatgaaaaggcgaggctgaggtttgcacacgcagaaactgtggttccattttcatgcttgcttgggctttttcttgaaggatctgaatttcaacaaataaagagggaacagcccttggaacagcctccaaagcctccccagaaaagaaattggaagtgcagcaaagtggcaccttttggtgggaataacatgcttgttctatacagctgtccagccaaaagttcaagcaagtactttgtgcaagtgttgcacaatgagcatcccgttcctgtgcctggttgtgatggttctgacctttgcccacttgatgttttcaaggaaaaagtagttgctcctcacttgaagcatgactacaatgcagtatgcaatatgaaaacgggacagcaggagcagaagcctgcaaccgaagtctctgcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00562 ko01100 map00010 map00562 map01100
Pfam Domains
Protein Families
His_Phos_2

Protein Analysis

477

Amino Acids

53.51

Weight (kDa)

7.92

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09870
fragaria_vesca FvH4_7g25060 FvH4_7g25060
malus_domestica MD01G1157500.v1.1
prunus_persica Prupe.2G255400_v2.0.a1 Prupe.2G255400_v2.0.a1
pyrus_communis pycom01g17420
rosa_chinensis RchiOBHm_Chr1g0370931
rosa_laevigata RLG00000026998
rosa_multiflora Rmu_sc0001018.1_g000003
rosa_roxburghii Rroxscaffold_4G00286120
rosa_rugosa Rorug01G0360200 Rorug01G0360200
rosa_samantha Rh1AG370300 Rh1BG333900 Rh1CG347200 Rh1DG365100
rosa_wichuraiana Rw1G032590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 2 cut(s) 934, 1180
AccB7I CCANNNNNTGG 1 cut(s) 964
AclWI GGATC 2 cut(s) 490, 1099
AcsI RAATTY 2 cut(s) 162, 1097
AcyI GRCGYC 2 cut(s) 132, 506
AfaI GTAC 2 cut(s) 1009, 1244
AfeI AGCGCT 1 cut(s) 737
AfiI CCNNNNNNNGG 6 cut(s) 356, 394, 850, 964, 1190, 1286
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 765
AjiI CACGTC 1 cut(s) 768
AjnI CCWGG 7 cut(s) 255, 322, 387, 565, 969, 1003, 1285
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 8 cut(s) 16, 86, 263, 304, 403, 827, 914, 1218
AluI AGCT 8 cut(s) 16, 86, 263, 304, 403, 827, 914, 1218
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 1426
AlwI GGATC 2 cut(s) 490, 1099
AlwNI CAGNNNCTG 2 cut(s) 304, 1049
Ama87I CYCGRG 1 cut(s) 501
Aor51HI AGCGCT 1 cut(s) 737
AoxI GGCC 3 cut(s) 563, 885, 981
ApeKI GCWGC 3 cut(s) 260, 304, 1170
ApoI RAATTY 2 cut(s) 162, 1097
ArsI GACNNNNNNTTYG 2 cut(s) 862, 894
Asp700I GAANNNNTTC 2 cut(s) 217, 435
AspLEI GCGC 2 cut(s) 738, 835
AspS9I GGNCC 3 cut(s) 563, 967, 982
AsuHPI GGTGA 1 cut(s) 583
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 1 cut(s) 967
BaeGI GKGCMC 1 cut(s) 939
BanI GGYRCC 2 cut(s) 934, 1180
BarI GAAGNNNNNNTAC 2 cut(s) 1346, 1378
BbsI GAAGAC 2 cut(s) 480, 762
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 2 cut(s) 623, 1028
BbvI GCAGC 3 cut(s) 272, 291, 1182
BccI CCATC 5 cut(s) 164, 471, 488, 685, 1289
BceAI ACGGC 2 cut(s) 572, 588
BcgI CGANNNNNNTGC 3 cut(s) 197, 231, 1406
BciT130I CCWGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 1 cut(s) 1426
BfaI CTAG 2 cut(s) 29, 426
BfmI CTRYAG 2 cut(s) 922, 1425
BfoI RGCGCY 1 cut(s) 739
BfrI CTTAAG 1 cut(s) 692
BisI GCNGC 3 cut(s) 261, 305, 1171
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 3 cut(s) 262, 306, 1172
BmcAI AGTACT 1 cut(s) 1244
Bme1390I CCNGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
Bme18I GGWCC 1 cut(s) 967
BmeT110I CYCGRG 1 cut(s) 501
BmgBI CACGTC 1 cut(s) 768
BmgT120I GGNCC 3 cut(s) 563, 967, 982
BmiI GGNNCC 5 cut(s) 675, 699, 936, 1056, 1182
BmrFI CCNGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 164, 164, 1279
BmuI ACTGGG 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 480, 762
BpmI CTGGAG 1 cut(s) 884
Bpu10I CCTNAGC 2 cut(s) 623, 1028
Bpu1102I GCTNAGC 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 132, 506
BsaJI CCNNGG 5 cut(s) 350, 387, 388, 500, 1125
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 6 cut(s) 356, 394, 850, 964, 1190, 1286
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 4 cut(s) 417, 513, 594, 701
BseBI CCWGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
BseDI CCNNGG 5 cut(s) 350, 387, 388, 500, 1125
BseGI GGATG 4 cut(s) 179, 243, 463, 1270
BseLI CCNNNNNNNGG 6 cut(s) 356, 394, 850, 964, 1190, 1286
BseMII CTCAG 5 cut(s) 54, 506, 614, 840, 1019
BseNI ACTGG 4 cut(s) 417, 513, 594, 701
BseRI GAGGAG 1 cut(s) 1335
BseSI GKGCMC 1 cut(s) 939
BseXI GCAGC 3 cut(s) 272, 291, 1182
BsgI GTGCAG 1 cut(s) 1189
BshFI GGCC 3 cut(s) 565, 887, 983
BshNI GGYRCC 2 cut(s) 934, 1180
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 2 cut(s) 66, 138
BslFI GGGAC 1 cut(s) 1404
BslI CCNNNNNNNGG 6 cut(s) 356, 394, 850, 964, 1190, 1286
BsmAI GTCTC 1 cut(s) 1426
BsmFI GGGAC 1 cut(s) 1404
BsnI GGCC 3 cut(s) 565, 887, 983
BsoBI CYCGRG 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 48, 939
Bsp143I GATC 3 cut(s) 495, 820, 1091
Bsp1720I GCTNAGC 1 cut(s) 12
BspANI GGCC 3 cut(s) 565, 887, 983
BspCNI CTCAG 5 cut(s) 53, 505, 615, 841, 1020
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 5 cut(s) 675, 699, 936, 1056, 1182
BspMAI CTGCAG 1 cut(s) 1429
BspPI GGATC 2 cut(s) 490, 1099
BspQI GCTCTTC 2 cut(s) 53, 393
BspT107I GGYRCC 2 cut(s) 934, 1180
BspTI CTTAAG 1 cut(s) 692
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 4 cut(s) 417, 513, 594, 701
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 350, 387, 388, 500, 1125
BssMI GATC 3 cut(s) 495, 820, 1091
BssNI GRCGYC 2 cut(s) 132, 506
BssT1I CCWWGG 2 cut(s) 350, 1125
Bst2UI CCWGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
Bst4CI ACNGT 1 cut(s) 1051
Bst6I CTCTTC 2 cut(s) 53, 393
BstACI GRCGYC 2 cut(s) 132, 506
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 1258
BstC8I GCNNGC 3 cut(s) 139, 1070, 1410
BstDEI CTNAG 7 cut(s) 12, 40, 492, 623, 732, 849, 1028
BstF5I GGATG 4 cut(s) 179, 243, 463, 1270
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 2 cut(s) 738, 835
BstKTI GATC 3 cut(s) 498, 823, 1094
BstMAI GTCTC 1 cut(s) 1426
BstMBI GATC 3 cut(s) 495, 820, 1091
BstMWI GCNNNNNNNGC 6 cut(s) 269, 310, 980, 1141, 1258, 1267
BstNI CCWGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
BstNSI RCATGY 2 cut(s) 1001, 1204
BstSCI CCNGG 7 cut(s) 255, 322, 387, 565, 969, 1003, 1285
BstSFI CTRYAG 2 cut(s) 922, 1425
BstSLI GKGCMC 1 cut(s) 939
BstV1I GCAGC 3 cut(s) 272, 291, 1182
BstV2I GAAGAC 2 cut(s) 480, 762
BstX2I RGATCY 2 cut(s) 495, 1091
BstXI CCANNNNNNTGG 1 cut(s) 520
BstYI RGATCY 2 cut(s) 495, 1091
BsuRI GGCC 3 cut(s) 565, 887, 983
BtrI CACGTC 1 cut(s) 768
BtsCI GGATG 4 cut(s) 179, 243, 463, 1270
BtsIMutI CAGTG 4 cut(s) 48, 520, 550, 601
Cac8I GCNNGC 3 cut(s) 139, 1070, 1410
CaiI CAGNNNCTG 2 cut(s) 304, 1049
CciI TCATGA 1 cut(s) 631
CfoI GCGC 2 cut(s) 738, 835
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 563, 967, 982
CseI GACGC 1 cut(s) 495
Csp6I GTAC 2 cut(s) 1008, 1243
CviAII CATG 7 cut(s) 209, 532, 632, 998, 1065, 1201, 1358
CviQI GTAC 2 cut(s) 1008, 1243
DdeI CTNAG 7 cut(s) 12, 40, 492, 623, 732, 849, 1028
DpnI GATC 3 cut(s) 497, 822, 1093
DpnII GATC 3 cut(s) 495, 820, 1091
Eam1104I CTCTTC 2 cut(s) 53, 393
EarI CTCTTC 2 cut(s) 53, 393
Eco130I CCWWGG 2 cut(s) 350, 1125
Eco147I AGGCCT 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 967
Eco47III AGCGCT 1 cut(s) 737
Eco88I CYCGRG 1 cut(s) 501
EcoRII CCWGG 7 cut(s) 255, 322, 387, 565, 969, 1003, 1285
EcoT14I CCWWGG 2 cut(s) 350, 1125
ErhI CCWWGG 2 cut(s) 350, 1125
FaeI CATG 7 cut(s) 212, 535, 635, 1001, 1068, 1204, 1361
FalI AAGNNNNNCTT 4 cut(s) 543, 575, 734, 766
FaqI GGGAC 1 cut(s) 1404
FatI CATG 7 cut(s) 208, 531, 631, 997, 1064, 1200, 1357
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 3 cut(s) 261, 305, 1171
FokI GGATG 4 cut(s) 186, 250, 450, 1257
Fsp4HI GCNGC 3 cut(s) 261, 305, 1171
FspBI CTAG 2 cut(s) 29, 426
GlaI GCGC 2 cut(s) 737, 834
GluI GCNGC 3 cut(s) 261, 305, 1171
GsuI CTGGAG 1 cut(s) 884
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 3 cut(s) 565, 887, 983
HapII CCGG 2 cut(s) 66, 138
HgaI GACGC 1 cut(s) 495
HhaI GCGC 2 cut(s) 738, 835
Hin1I GRCGYC 2 cut(s) 132, 506
Hin1II CATG 7 cut(s) 212, 535, 635, 1001, 1068, 1204, 1361
Hin6I GCGC 2 cut(s) 736, 833
HinP1I GCGC 2 cut(s) 736, 833
HindIII AAGCTT 4 cut(s) 14, 84, 825, 912
HinfI GANTC 2 cut(s) 193, 344
HpaII CCGG 2 cut(s) 66, 138
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 374, 870
Hpy188I TCNGA 6 cut(s) 160, 495, 663, 850, 1096, 1303
Hpy188III TCNNGA 5 cut(s) 120, 167, 632, 671, 1085
Hpy8I GTNNAC 2 cut(s) 374, 870
Hpy99I CGWCG 2 cut(s) 95, 137
HpyAV CCTTC 4 cut(s) 235, 329, 349, 1082
HpyCH4III ACNGT 1 cut(s) 1051
HpyCH4IV ACGT 3 cut(s) 93, 132, 767
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 310, 980, 1141, 1258, 1267
HpyF3I CTNAG 7 cut(s) 12, 40, 492, 623, 732, 849, 1028
HpySE526I ACGT 3 cut(s) 93, 132, 767
Hsp92I GRCGYC 2 cut(s) 132, 506
Hsp92II CATG 7 cut(s) 212, 535, 635, 1001, 1068, 1204, 1361
HspAI GCGC 2 cut(s) 736, 833
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 3 cut(s) 495, 820, 1091
LguI GCTCTTC 2 cut(s) 53, 393
LmnI GCTCC 4 cut(s) 673, 1006, 1348, 1399
Lsp1109I GCAGC 3 cut(s) 272, 291, 1182
LweI GCATC 3 cut(s) 164, 164, 1279
MaeI CTAG 2 cut(s) 29, 426
MaeII ACGT 3 cut(s) 93, 132, 767
MaeIII GTNAC 3 cut(s) 589, 611, 814
MalI GATC 3 cut(s) 497, 822, 1093
MboI GATC 3 cut(s) 495, 820, 1091
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 2 cut(s) 495, 1091
MhlI GDGCHC 2 cut(s) 48, 939
MluCI AATT 7 cut(s) 142, 162, 377, 417, 714, 1097, 1159
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 2 cut(s) 217, 435
MseI TTAA 5 cut(s) 332, 684, 693, 728, 896
MslI CAYNNNNRTG 3 cut(s) 60, 468, 1063
MspA1I CMGCKG 1 cut(s) 1218
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 2 cut(s) 66, 138
MspR9I CCNGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
MunI CAATTG 1 cut(s) 377
MvaI CCWGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
MwoI GCNNNNNNNGC 6 cut(s) 269, 310, 980, 1141, 1258, 1267
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 3 cut(s) 495, 820, 1091
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 7 cut(s) 212, 535, 635, 1001, 1068, 1204, 1361
NlaIV GGNNCC 5 cut(s) 675, 699, 936, 1056, 1182
NmuCI GTSAC 2 cut(s) 589, 611
NspI RCATGY 2 cut(s) 1001, 1204
PagI TCATGA 1 cut(s) 631
PasI CCCWGGG 1 cut(s) 388
PceI AGGCCT 1 cut(s) 887
PciSI GCTCTTC 2 cut(s) 53, 393
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 2 cut(s) 217, 435
PfeI GAWTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 964
PkrI GCNGC 3 cut(s) 262, 306, 1172
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 7 cut(s) 255, 322, 387, 565, 969, 1003, 1285
PspGI CCWGG 7 cut(s) 255, 322, 387, 565, 969, 1003, 1285
PspN4I GGNNCC 5 cut(s) 675, 699, 936, 1056, 1182
PspPI GGNCC 3 cut(s) 563, 967, 982
PstI CTGCAG 1 cut(s) 1429
PstNI CAGNNNCTG 2 cut(s) 304, 1049
PsuI RGATCY 2 cut(s) 495, 1091
PvuII CAGCTG 1 cut(s) 1218
RsaI GTAC 2 cut(s) 1009, 1244
RsaNI GTAC 2 cut(s) 1008, 1243
RseI CAYNNNNRTG 3 cut(s) 60, 468, 1063
SapI GCTCTTC 2 cut(s) 53, 393
SaqAI TTAA 5 cut(s) 332, 684, 693, 728, 896
SatI GCNGC 3 cut(s) 261, 305, 1171
Sau3AI GATC 3 cut(s) 495, 820, 1091
Sau96I GGNCC 3 cut(s) 563, 967, 982
ScaI AGTACT 1 cut(s) 1244
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 7 cut(s) 257, 324, 389, 567, 971, 1005, 1287
SduI GDGCHC 2 cut(s) 48, 939
SfaNI GCATC 3 cut(s) 164, 164, 1279
SfcI CTRYAG 2 cut(s) 922, 1425
SinI GGWCC 1 cut(s) 967
SmiMI CAYNNNNRTG 3 cut(s) 60, 468, 1063
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 7 cut(s) 142, 162, 377, 417, 714, 1097, 1159
SseBI AGGCCT 1 cut(s) 887
SspMI CTAG 2 cut(s) 29, 426
StuI AGGCCT 1 cut(s) 887
StyD4I CCNGG 7 cut(s) 255, 322, 387, 565, 969, 1003, 1285
StyI CCWWGG 2 cut(s) 350, 1125
TaaI ACNGT 1 cut(s) 1051
TaiI ACGT 3 cut(s) 96, 135, 770
TaqI TCGA 1 cut(s) 90
TasI AATT 7 cut(s) 142, 162, 377, 417, 714, 1097, 1159
TatI WGTACW 1 cut(s) 1242
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 5 cut(s) 332, 684, 693, 728, 896
Tru9I TTAA 5 cut(s) 332, 684, 693, 728, 896
TscAI CASTG 4 cut(s) 48, 520, 550, 601
TseFI GTSAC 2 cut(s) 589, 611
TseI GCWGC 3 cut(s) 260, 304, 1170
Tsp45I GTSAC 2 cut(s) 589, 611
TspDTI ATGAA 7 cut(s) 135, 254, 423, 620, 1029, 1053, 1397
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 4 cut(s) 48, 520, 550, 601
Van91I CCANNNNNTGG 1 cut(s) 964
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 967
XapI RAATTY 2 cut(s) 162, 1097
XceI RCATGY 2 cut(s) 1001, 1204
XmnI GAANNNNTTC 2 cut(s) 217, 435
XspI CTAG 2 cut(s) 29, 426
ZraI GACGTC 1 cut(s) 133
ZrmI AGTACT 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.