FvH4_7g25060

Belongs to the histidine acid phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012909
Physical Location & Seq
Reverse (-)
19197729 .. 19202296
4568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25060.t2

Sequence Viewer

Length: 1437 bp
ATGGTTATGGCTAAGCTTCTCAGTCTGCTACTACTTTTCTCCGTCTTCTTCCTCCATTCAAATGCCGGAGAAGAAGAAGCTTTCGACGTTCGCCAACACCTCTCTACTGTGTCCAGATACGGCGTCGTTAAAGACGTCGCTGACAATTCATTTGTAGCATCTGAAATTCCAGATGGATGCACTCCCATTCACTTGAATCTTGTGGCAAGGCATGGAACTCGGTCTCCTACGAAGAAACGGATGAAGGAGATGGACAACCTGGCACCTCGTCTGGCTTCGTTAGTGAAGGAAGCTGAAGAACAGAAACAGCCTTTGCAAAACCTTCCCGCTTGGTTAAGGGAATGGGAATCGCCTTGGAAAGGAAAACAGAATGGTGGACAATTGACTGTCCAGGGAGAGGAAGAGCTCTATGAATTAGGAATTAGGACTAGAGAAAGATTCCCGCATTTGTTTGATGAGGATTACCATCCAAATGTGTATGCCATCAAGTCATCTCAAATCCCTCGGGCATCAGCCAGTGCTGTGGCATTTGGCATGGGGTTGTTCAGTGGCAAAGGAAATCTTGGTCCAGGCAGACATCAAGCTTTTGCTGTAACCAGTGAAAGCCGTGCGAGTGATATAGTGTTGAGGTTCCATGATTGTTGCGATAACTACAAGGACTATCGGAAAAGTCAGGAGCCATCTGTTACTAAGCTTAAGGAACCAGTCTTTGACGAAATTACTTCTGCATTAAAAAGGCGCTACAAGTTGAACTTTTCAAGGCAGGACACATCATCACTCTGGTTTCTTTGCAAACAGGAGGCGTCCTTGTTGAATGTAACCGATCAAGCTTGTGCGCTTTTCAGCCCCTCTGAGGTTGCTTTGCTGGAATGGACAGATGATTTGGAGGCCTTTATATTGAAGGGGTATGGTAAAGCTTTGAACTATAGAATGGGGGTTCCCTTGCTTAAAGATGTTGTGCAATCTATGGATCAGGCTATTGAGGCCCACGAAGAAAAACATGATCCTGGCACTTATGAAAAGGCAAGGCTGAGGTTTGCACACGCAGAAACTGTGGTTCCATTTTCATGCTTGCTCGGGCTTTTTCTTGAAGGATCTGAATTTCAACAAATACAGAGGGAACAGCCCTTGGAACACCCTCCAAAGCCTCCCCAGAAAAGAAATTGGAAGTGCAGCAATATGGCACCTTTTGGTGGGAATAACATGCTTGTACTGTACAGCTGTCCAGCCAACAGTTCAAGCAAGTACTTTGTGCAAGTGTTGCACAATGAGCAACCCATTCCTGTGCCTGGTTGTGATGGTTCTGACCTTTGCCCACTTGATGATTTTAAGGAAAAAGTAGTTGCTCCTCATTTGAAGCATGACTACAATGCAGTATGCAATACAAAAGGAGGACAGCAGGAGCAAAAGCCTGCAACCAAAGTCTCTGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00562 ko01100 map00010 map00562 map01100
Pfam Domains
Protein Families
His_Phos_2

Protein Analysis

479

Amino Acids

53.81

Weight (kDa)

6.45

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_2 PF00328 64 - 423 5.9e-56 Histidine phosphatase superfamily (branch 2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09870
fragaria_vesca FvH4_7g25060 FvH4_7g25060
malus_domestica MD01G1157500.v1.1
prunus_persica Prupe.2G255400_v2.0.a1 Prupe.2G255400_v2.0.a1
pyrus_communis pycom01g17420
rosa_chinensis RchiOBHm_Chr1g0370931
rosa_laevigata RLG00000026998
rosa_multiflora Rmu_sc0001018.1_g000003
rosa_roxburghii Rroxscaffold_4G00286120
rosa_rugosa Rorug01G0360200 Rorug01G0360200
rosa_samantha Rh1AG370300 Rh1BG333900 Rh1CG347200 Rh1DG365100
rosa_wichuraiana Rw1G032590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 138
AccB1I GGYRCC 2 cut(s) 262, 1183
AciI CCGC 2 cut(s) 327, 443
AclWI GGATC 3 cut(s) 978, 998, 1102
AcsI RAATTY 2 cut(s) 165, 1100
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 3 cut(s) 123, 135, 803
AfaI GTAC 3 cut(s) 1212, 1217, 1247
AfiI CCNNNNNNNGG 5 cut(s) 359, 397, 853, 1193, 1289
AflII CTTAAG 1 cut(s) 695
AjnI CCWGG 5 cut(s) 258, 390, 568, 1006, 1288
AloI GAACNNNNNNTCC 2 cut(s) 208, 240
AluBI AGCT 9 cut(s) 16, 80, 293, 406, 584, 694, 830, 917, 1221
AluI AGCT 9 cut(s) 16, 80, 293, 406, 584, 694, 830, 917, 1221
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 228, 1429
AlwI GGATC 3 cut(s) 978, 998, 1102
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 2 cut(s) 504, 1076
AoxI GGCC 2 cut(s) 888, 984
ApeKI GCWGC 1 cut(s) 1173
ApoI RAATTY 2 cut(s) 165, 1100
ArsI GACNNNNNNTTYG 4 cut(s) 134, 166, 865, 897
AspLEI GCGC 2 cut(s) 741, 838
AspS9I GGNCC 2 cut(s) 566, 985
AvaI CYCGRG 2 cut(s) 504, 1076
AvaII GGWCC 1 cut(s) 566
BanI GGYRCC 2 cut(s) 262, 1183
BanII GRGCYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 1349, 1381
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 408
BbvCI CCTCAGC 1 cut(s) 1031
BbvI GCAGC 1 cut(s) 1185
BccI CCATC 6 cut(s) 167, 244, 474, 491, 688, 1292
BceAI ACGGC 2 cut(s) 136, 591
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 5 cut(s) 260, 392, 570, 1008, 1290
BcoDI GTCTC 2 cut(s) 228, 1429
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 925
BfoI RGCGCY 1 cut(s) 742
BfrI CTTAAG 1 cut(s) 695
BisI GCNGC 1 cut(s) 1174
BlpI GCTNAGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 1175
BmcAI AGTACT 1 cut(s) 1247
Bme1390I CCNGG 5 cut(s) 260, 392, 570, 1008, 1290
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 2 cut(s) 504, 1076
BmgT120I GGNCC 2 cut(s) 566, 985
BmiI GGNNCC 7 cut(s) 264, 632, 678, 702, 939, 1059, 1185
BmrFI CCNGG 5 cut(s) 260, 392, 570, 1008, 1290
BmsI GCATC 3 cut(s) 167, 167, 518
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 1031
Bpu1102I GCTNAGC 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 3 cut(s) 123, 135, 803
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 353, 391, 503, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 397, 853, 1193, 1289
Bse1I ACTGG 3 cut(s) 516, 597, 704
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 5 cut(s) 260, 392, 570, 1008, 1290
BseDI CCNNGG 4 cut(s) 353, 391, 503, 1128
BseGI GGATG 3 cut(s) 182, 246, 466
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 5 cut(s) 359, 397, 853, 1193, 1289
BseMII CTCAG 3 cut(s) 34, 843, 1022
BseNI ACTGG 3 cut(s) 516, 597, 704
BseRI GAGGAG 1 cut(s) 1338
BseXI GCAGC 1 cut(s) 1185
BsgI GTGCAG 1 cut(s) 1192
BshFI GGCC 2 cut(s) 890, 986
BshNI GGYRCC 2 cut(s) 262, 1183
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 2 cut(s) 504, 1076
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 5 cut(s) 359, 397, 853, 1193, 1289
BsmAI GTCTC 2 cut(s) 228, 1429
BsnI GGCC 2 cut(s) 890, 986
Bso31I GGTCTC 1 cut(s) 228
BsoBI CYCGRG 2 cut(s) 504, 1076
Bsp1286I GDGCHC 1 cut(s) 408
Bsp1407I TGTACA 1 cut(s) 1215
Bsp143I GATC 4 cut(s) 823, 970, 1003, 1094
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 2 cut(s) 327, 443
BspANI GGCC 2 cut(s) 890, 986
BspCNI CTCAG 3 cut(s) 33, 844, 1023
BspLI GGNNCC 7 cut(s) 264, 632, 678, 702, 939, 1059, 1185
BspPI GGATC 3 cut(s) 978, 998, 1102
BspQI GCTCTTC 1 cut(s) 396
BspT107I GGYRCC 2 cut(s) 262, 1183
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 1215
BsrI ACTGG 3 cut(s) 516, 597, 704
BssECI CCNNGG 4 cut(s) 353, 391, 503, 1128
BssMI GATC 4 cut(s) 823, 970, 1003, 1094
BssNI GRCGYC 3 cut(s) 123, 135, 803
BssT1I CCWWGG 2 cut(s) 353, 1128
Bst2UI CCWGG 5 cut(s) 260, 392, 570, 1008, 1290
Bst4CI ACNGT 5 cut(s) 109, 388, 1054, 1215, 1235
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 3 cut(s) 123, 135, 803
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 1261
BstAUI TGTACA 1 cut(s) 1215
BstC8I GCNNGC 2 cut(s) 1073, 1413
BstDEI CTNAG 5 cut(s) 12, 20, 690, 852, 1031
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 182, 246, 466
BstH2I RGCGCY 1 cut(s) 742
BstHHI GCGC 2 cut(s) 741, 838
BstKTI GATC 4 cut(s) 826, 973, 1006, 1097
BstMAI GTCTC 2 cut(s) 228, 1429
BstMBI GATC 4 cut(s) 823, 970, 1003, 1094
BstMWI GCNNNNNNNGC 3 cut(s) 983, 1261, 1270
BstNI CCWGG 5 cut(s) 260, 392, 570, 1008, 1290
BstNSI RCATGY 1 cut(s) 1207
BstSCI CCNGG 5 cut(s) 258, 390, 568, 1006, 1288
BstSFI CTRYAG 1 cut(s) 925
BstV1I GCAGC 1 cut(s) 1185
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 1094
BstXI CCANNNNNNTGG 1 cut(s) 523
BstYI RGATCY 1 cut(s) 1094
BsuRI GGCC 2 cut(s) 890, 986
BtsCI GGATG 3 cut(s) 182, 246, 466
BtsIMutI CAGTG 3 cut(s) 523, 553, 604
Cac8I GCNNGC 2 cut(s) 1073, 1413
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 2 cut(s) 741, 838
Cfr13I GGNCC 2 cut(s) 566, 985
CseI GACGC 2 cut(s) 112, 792
Csp6I GTAC 3 cut(s) 1211, 1216, 1246
CviAII CATG 7 cut(s) 212, 535, 635, 1001, 1068, 1204, 1361
CviQI GTAC 3 cut(s) 1211, 1216, 1246
DdeI CTNAG 5 cut(s) 12, 20, 690, 852, 1031
DpnI GATC 4 cut(s) 825, 972, 1005, 1096
DpnII GATC 4 cut(s) 823, 970, 1003, 1094
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 353, 1128
Eco147I AGGCCT 1 cut(s) 890
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 2 cut(s) 504, 1076
EcoICRI GAGCTC 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoRII CCWGG 5 cut(s) 258, 390, 568, 1006, 1288
EcoT14I CCWWGG 2 cut(s) 353, 1128
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 353, 1128
FaeI CATG 7 cut(s) 215, 538, 638, 1004, 1071, 1207, 1364
FalI AAGNNNNNCTT 4 cut(s) 546, 578, 737, 769
FatI CATG 7 cut(s) 211, 534, 634, 1000, 1067, 1203, 1360
FauI CCCGC 2 cut(s) 334, 450
Fnu4HI GCNGC 1 cut(s) 1174
FokI GGATG 3 cut(s) 189, 253, 453
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 1 cut(s) 1174
FspBI CTAG 1 cut(s) 429
GlaI GCGC 2 cut(s) 740, 837
GluI GCNGC 1 cut(s) 1174
HaeII RGCGCY 1 cut(s) 742
HaeIII GGCC 2 cut(s) 890, 986
HapII CCGG 1 cut(s) 66
HgaI GACGC 2 cut(s) 112, 792
HhaI GCGC 2 cut(s) 741, 838
Hin1I GRCGYC 3 cut(s) 123, 135, 803
Hin1II CATG 7 cut(s) 215, 538, 638, 1004, 1071, 1207, 1364
Hin6I GCGC 2 cut(s) 739, 836
HinP1I GCGC 2 cut(s) 739, 836
HindIII AAGCTT 6 cut(s) 14, 78, 582, 692, 828, 915
HinfI GANTC 3 cut(s) 196, 347, 438
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 5 cut(s) 163, 666, 853, 1099, 1306
Hpy188III TCNNGA 4 cut(s) 114, 170, 674, 1088
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 3 cut(s) 89, 128, 140
HpyAV CCTTC 5 cut(s) 238, 280, 332, 895, 1085
HpyCH4III ACNGT 5 cut(s) 109, 388, 1054, 1215, 1235
HpyCH4IV ACGT 2 cut(s) 87, 135
HpyF10VI GCNNNNNNNGC 3 cut(s) 983, 1261, 1270
HpyF3I CTNAG 5 cut(s) 12, 20, 690, 852, 1031
HpySE526I ACGT 2 cut(s) 87, 135
Hsp92I GRCGYC 3 cut(s) 123, 135, 803
Hsp92II CATG 7 cut(s) 215, 538, 638, 1004, 1071, 1207, 1364
HspAI GCGC 2 cut(s) 739, 836
Kzo9I GATC 4 cut(s) 823, 970, 1003, 1094
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 3 cut(s) 676, 1351, 1402
Lsp1109I GCAGC 1 cut(s) 1185
LweI GCATC 3 cut(s) 167, 167, 518
MaeI CTAG 1 cut(s) 429
MaeII ACGT 2 cut(s) 87, 135
MaeIII GTNAC 3 cut(s) 592, 685, 817
MalI GATC 4 cut(s) 825, 972, 1005, 1096
MboI GATC 4 cut(s) 823, 970, 1003, 1094
MboII GAAGA 8 cut(s) 37, 40, 83, 86, 244, 308, 413, 1004
MfeI CAATTG 1 cut(s) 380
MflI RGATCY 1 cut(s) 1094
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 8 cut(s) 145, 165, 380, 413, 420, 717, 1100, 1162
MseI TTAA 6 cut(s) 129, 335, 696, 731, 948, 1329
MslI CAYNNNNRTG 4 cut(s) 60, 471, 1066, 1283
MspA1I CMGCKG 1 cut(s) 1221
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 5 cut(s) 260, 392, 570, 1008, 1290
MunI CAATTG 1 cut(s) 380
MvaI CCWGG 5 cut(s) 260, 392, 570, 1008, 1290
MwoI GCNNNNNNNGC 3 cut(s) 983, 1261, 1270
NdeII GATC 4 cut(s) 823, 970, 1003, 1094
NlaIII CATG 7 cut(s) 215, 538, 638, 1004, 1071, 1207, 1364
NlaIV GGNNCC 7 cut(s) 264, 632, 678, 702, 939, 1059, 1185
NspI RCATGY 1 cut(s) 1207
PceI AGGCCT 1 cut(s) 890
PciSI GCTCTTC 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 3 cut(s) 196, 347, 438
PkrI GCNGC 1 cut(s) 1175
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 5 cut(s) 258, 390, 568, 1006, 1288
PspGI CCWGG 5 cut(s) 258, 390, 568, 1006, 1288
PspN4I GGNNCC 7 cut(s) 264, 632, 678, 702, 939, 1059, 1185
PspPI GGNCC 2 cut(s) 566, 985
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 1 cut(s) 1094
PvuII CAGCTG 1 cut(s) 1221
RsaI GTAC 3 cut(s) 1212, 1217, 1247
RsaNI GTAC 3 cut(s) 1211, 1216, 1246
RseI CAYNNNNRTG 4 cut(s) 60, 471, 1066, 1283
SacI GAGCTC 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 6 cut(s) 129, 335, 696, 731, 948, 1329
SatI GCNGC 1 cut(s) 1174
Sau3AI GATC 4 cut(s) 823, 970, 1003, 1094
Sau96I GGNCC 2 cut(s) 566, 985
ScaI AGTACT 1 cut(s) 1247
ScrFI CCNGG 5 cut(s) 260, 392, 570, 1008, 1290
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 167, 167, 518
SfcI CTRYAG 1 cut(s) 925
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 4 cut(s) 60, 471, 1066, 1283
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 8 cut(s) 145, 165, 380, 413, 420, 717, 1100, 1162
SseBI AGGCCT 1 cut(s) 890
SsiI CCGC 2 cut(s) 327, 443
SspMI CTAG 1 cut(s) 429
SstI GAGCTC 1 cut(s) 408
StuI AGGCCT 1 cut(s) 890
StyD4I CCNGG 5 cut(s) 258, 390, 568, 1006, 1288
StyI CCWWGG 2 cut(s) 353, 1128
TaaI ACNGT 5 cut(s) 109, 388, 1054, 1215, 1235
TaiI ACGT 2 cut(s) 90, 138
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 210
TasI AATT 8 cut(s) 145, 165, 380, 413, 420, 717, 1100, 1162
TatI WGTACW 3 cut(s) 1210, 1215, 1245
TfiI GAWTC 3 cut(s) 196, 347, 438
Tru1I TTAA 6 cut(s) 129, 335, 696, 731, 948, 1329
Tru9I TTAA 6 cut(s) 129, 335, 696, 731, 948, 1329
TscAI CASTG 3 cut(s) 523, 553, 604
TseI GCWGC 1 cut(s) 1173
TspDTI ATGAA 5 cut(s) 138, 257, 426, 1032, 1056
TspGWI ACGGA 2 cut(s) 31, 253
TspRI CASTG 3 cut(s) 523, 553, 604
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 566
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 2 cut(s) 165, 1100
XceI RCATGY 1 cut(s) 1207
XspI CTAG 1 cut(s) 429
ZraI GACGTC 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.