Rroxscaffold_4G00286120

Belongs to the histidine acid phosphatase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
7292719 .. 7296968
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286120.1

Sequence Viewer

Length: 1482 bp
ATGGTTAGGGCTAAGATTCTCATTCTGCTAGTATTGTTGTCAGTGTTCTTCGTCCATTCAAATGCCGGAGAAGAAGAAGAAGCTTTCGACGTTCGCCAACACCTTTCTTCTGTGTCCAGATATAAAGACATCGCCGGCAATTCATTTGTAGCATCTGAAATTCCAGATGGATGCACTCCCATTCACTTGAATCTTGTGGCAAGGCATGGAACTCGTTCTCCTACAAAGAAACGGATGAAGGAGTTGGACAACCTGGCAGCTCGTCTGGCTTCGTTAGTGAAAGAAGCAGAAGAACAGAAGCTGCCTTTGCAAAACCTTCCCGGTTGGTTAAAGGAATGGGAGTCGCCTTGGAAGGGAAAACAAAATGGTGGACAATTGACTGTCCAGGGAGAGGAAGAGCTCTATGAACTGGGAATTAGGACTAGAGAAAGATTTCCAAATCTGTTTGATGAGGACTATCATCCAAATGTTTATCCCATCAAGTCTTCTCAGATCCCTCGGGCGTCAGCCAGTGCTGTGGCATTTGGCATGGGGTTGTTCACTGGCAAAGGAAATCTTGGGCCGGGCAAACATCGAGCTTTTGCTGTCACCAGTGAAAGCCGTGCGAGTGACATAGTGCTGAGGTTTCATGATTGTTGCAATAACTACAAGGACTATCGGAAAAGTCAGGAGCCATCTGTTAGTAAACTTAAGGAACCAGTCATTGACGAAATTACTTCTGCATTAACTAAGCGCTACAAGTTGAACTTTACAAGGCAGGACACATCTACTCTCTGGTTTCTTTGCAAACAGGAGGCTTCCCTGTTGAATGTAACTGATCAAGCTTGTGCGCTTTTCAACCCCTCTGAGGTTGCTTTGCTGGAGTGGACAGATGATTTGGAGGCCTTTATATTAAAGGGTTATGGTAAAGCTTTGAACTATAGAATGGGGGTGCCCTTGCTAAAAGATGTTGTCCAATCTATGGATCAGGCTATTGAGGCCCACGAAGAAAAACATGCTCCTGGTACTTATGAAAAGGCAAGGCTGAGGTTTGCACACGCAGAAACTGTGGTTCCATTTTCATGCTTGCTTGGGCTTTTTCTTGAAGGATCTGAATTTCAACAAATACAGAGGGAACAGCCCTTGGAACACCCTCCAAAGCCTCCCCAGAAAAGAAATTGGAAGTGCAGCAATGTGGCACCTTTTGGTGGGAATAACATGCTTGTTCTGTACAGCTGTCCAGCCAAAAGTTCAAGCAAGTACTTTGTGCAAGTGTTGCACAATGAGCATCCCGTTCCTGTGCCTGGTTGTGATGGTTCTGACCTTTGCCCACTTGATGTTTTCAAGGAAAAAGTAGTTGCTCCTCATTTGAAGCATGACTACAATGCAGTATGCAATATAAAAGCGGGACAGCAGGAGCAGAAGCCTGCAACCAGTAAGTTATCTCAACTGTTCCGTTGGCTTTTCTCAAAGGGGAATGATGATACCCGCAATGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

55.52

Weight (kDa)

7.59

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_2 PF00328 62 - 421 4.9e-57 Histidine phosphatase superfamily (branch 2)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012909)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 931, 1177
AccB7I CCANNNNNTGG 1 cut(s) 961
AciI CCGC 2 cut(s) 1385, 1468
AclWI GGATC 3 cut(s) 487, 972, 1096
AcsI RAATTY 2 cut(s) 159, 1094
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 3 cut(s) 1006, 1211, 1241
AfeI AGCGCT 1 cut(s) 734
AfiI CCNNNNNNNGG 6 cut(s) 353, 391, 847, 961, 1187, 1283
AflII CTTAAG 1 cut(s) 689
AjnI CCWGG 4 cut(s) 252, 384, 1000, 1282
AloI GAACNNNNNNTCC 2 cut(s) 202, 234
AluBI AGCT 8 cut(s) 83, 260, 301, 400, 578, 824, 911, 1215
AluI AGCT 8 cut(s) 83, 260, 301, 400, 578, 824, 911, 1215
Alw21I GWGCWC 1 cut(s) 402
AlwI GGATC 3 cut(s) 487, 972, 1096
AlwNI CAGNNNCTG 2 cut(s) 301, 1046
Ama87I CYCGRG 1 cut(s) 498
Aor51HI AGCGCT 1 cut(s) 734
AoxI GGCC 3 cut(s) 560, 882, 978
ApeKI GCWGC 3 cut(s) 257, 301, 1167
ApoI RAATTY 2 cut(s) 159, 1094
ArsI GACNNNNNNTTYG 2 cut(s) 859, 891
Asp700I GAANNNNTTC 2 cut(s) 214, 432
AspLEI GCGC 2 cut(s) 735, 832
AspS9I GGNCC 2 cut(s) 560, 979
AsuC2I CCSGG 2 cut(s) 321, 564
AsuHPI GGTGA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 936
BanI GGYRCC 2 cut(s) 931, 1177
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 1343, 1375
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 402
BbvCI CCTCAGC 2 cut(s) 620, 1025
BbvI GCAGC 3 cut(s) 269, 288, 1179
BccI CCATC 4 cut(s) 161, 485, 682, 1286
BceAI ACGGC 1 cut(s) 585
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 4 cut(s) 254, 386, 1002, 1284
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 2 cut(s) 321, 564
BfaI CTAG 2 cut(s) 29, 423
BfmI CTRYAG 1 cut(s) 919
BfoI RGCGCY 1 cut(s) 736
BfrI CTTAAG 1 cut(s) 689
BisI GCNGC 3 cut(s) 258, 302, 1168
BlsI GCNGC 3 cut(s) 259, 303, 1169
BmcAI AGTACT 1 cut(s) 1241
Bme1390I CCNGG 6 cut(s) 254, 321, 386, 564, 1002, 1284
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 560, 979
BmiI GGNNCC 5 cut(s) 672, 696, 933, 1053, 1179
BmrFI CCNGG 6 cut(s) 254, 321, 386, 564, 1002, 1284
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 161, 161, 1276
BmuI ACTGGG 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 881
Bpu10I CCTNAGC 2 cut(s) 620, 1025
BpuMI CCSGG 2 cut(s) 321, 564
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 4 cut(s) 347, 385, 497, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 6 cut(s) 353, 391, 847, 961, 1187, 1283
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 6 cut(s) 414, 510, 547, 591, 698, 1413
Bse3DI GCAATG 2 cut(s) 1177, 1477
BseBI CCWGG 4 cut(s) 254, 386, 1002, 1284
BseDI CCNNGG 4 cut(s) 347, 385, 497, 1122
BseGI GGATG 4 cut(s) 176, 240, 460, 1267
BseLI CCNNNNNNNGG 6 cut(s) 353, 391, 847, 961, 1187, 1283
BseMI GCAATG 2 cut(s) 1177, 1477
BseMII CTCAG 4 cut(s) 503, 611, 837, 1016
BseNI ACTGG 6 cut(s) 414, 510, 547, 591, 698, 1413
BseRI GAGGAG 1 cut(s) 1332
BseSI GKGCMC 1 cut(s) 936
BseXI GCAGC 3 cut(s) 269, 288, 1179
BsgI GTGCAG 1 cut(s) 1186
BshFI GGCC 3 cut(s) 562, 884, 980
BshNI GGYRCC 2 cut(s) 931, 1177
BsiHKAI GWGCWC 1 cut(s) 402
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 4 cut(s) 66, 135, 321, 563
BslFI GGGAC 1 cut(s) 1401
BslI CCNNNNNNNGG 6 cut(s) 353, 391, 847, 961, 1187, 1283
BsmFI GGGAC 1 cut(s) 1401
BsnI GGCC 3 cut(s) 562, 884, 980
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 402, 936
Bsp1407I TGTACA 1 cut(s) 1209
Bsp143I GATC 4 cut(s) 492, 817, 964, 1088
BspACI CCGC 2 cut(s) 1385, 1468
BspANI GGCC 3 cut(s) 562, 884, 980
BspCNI CTCAG 4 cut(s) 502, 612, 838, 1017
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 5 cut(s) 672, 696, 933, 1053, 1179
BspPI GGATC 3 cut(s) 487, 972, 1096
BspQI GCTCTTC 1 cut(s) 390
BspT107I GGYRCC 2 cut(s) 931, 1177
BspTI CTTAAG 1 cut(s) 689
BsrDI GCAATG 2 cut(s) 1177, 1477
BsrFI RCCGGY 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 1209
BsrI ACTGG 6 cut(s) 414, 510, 547, 591, 698, 1413
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 4 cut(s) 347, 385, 497, 1122
BssMI GATC 4 cut(s) 492, 817, 964, 1088
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 2 cut(s) 347, 1122
Bst2UI CCWGG 4 cut(s) 254, 386, 1002, 1284
Bst4CI ACNGT 3 cut(s) 382, 1048, 1431
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 503
BstAFI CTTAAG 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 1255
BstAUI TGTACA 1 cut(s) 1209
BstC8I GCNNGC 3 cut(s) 136, 1067, 1407
BstDEI CTNAG 6 cut(s) 12, 489, 620, 729, 846, 1025
BstF5I GGATG 4 cut(s) 176, 240, 460, 1267
BstH2I RGCGCY 1 cut(s) 736
BstHHI GCGC 2 cut(s) 735, 832
BstKTI GATC 4 cut(s) 495, 820, 967, 1091
BstMBI GATC 4 cut(s) 492, 817, 964, 1088
BstMWI GCNNNNNNNGC 5 cut(s) 266, 307, 977, 1255, 1264
BstNI CCWGG 4 cut(s) 254, 386, 1002, 1284
BstNSI RCATGY 2 cut(s) 998, 1201
BstSCI CCNGG 6 cut(s) 252, 319, 384, 562, 1000, 1282
BstSFI CTRYAG 1 cut(s) 919
BstSLI GKGCMC 1 cut(s) 936
BstV1I GCAGC 3 cut(s) 269, 288, 1179
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 2 cut(s) 492, 1088
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 2 cut(s) 492, 1088
BsuRI GGCC 3 cut(s) 562, 884, 980
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 4 cut(s) 176, 240, 460, 1267
BtsIMutI CAGTG 4 cut(s) 48, 517, 540, 598
Cac8I GCNNGC 3 cut(s) 136, 1067, 1407
CaiI CAGNNNCTG 2 cut(s) 301, 1046
CciI TCATGA 1 cut(s) 628
CfoI GCGC 2 cut(s) 735, 832
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 560, 979
CseI GACGC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 1005, 1210, 1240
CviAII CATG 7 cut(s) 206, 529, 629, 995, 1062, 1198, 1355
CviQI GTAC 3 cut(s) 1005, 1210, 1240
DdeI CTNAG 6 cut(s) 12, 489, 620, 729, 846, 1025
DpnI GATC 4 cut(s) 494, 819, 966, 1090
DpnII GATC 4 cut(s) 492, 817, 964, 1088
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 2 cut(s) 347, 1122
Eco147I AGGCCT 1 cut(s) 884
Eco24I GRGCYC 1 cut(s) 402
Eco47III AGCGCT 1 cut(s) 734
Eco53kI GAGCTC 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 4 cut(s) 252, 384, 1000, 1282
EcoT14I CCWWGG 2 cut(s) 347, 1122
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 347, 1122
FaeI CATG 7 cut(s) 209, 532, 632, 998, 1065, 1201, 1358
FalI AAGNNNNNCTT 4 cut(s) 540, 572, 731, 763
FaqI GGGAC 1 cut(s) 1401
FatI CATG 7 cut(s) 205, 528, 628, 994, 1061, 1197, 1354
FauI CCCGC 2 cut(s) 1378, 1475
FbaI TGATCA 1 cut(s) 817
Fnu4HI GCNGC 3 cut(s) 258, 302, 1168
FokI GGATG 4 cut(s) 183, 247, 447, 1254
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 258, 302, 1168
FspBI CTAG 2 cut(s) 29, 423
GlaI GCGC 2 cut(s) 734, 831
GluI GCNGC 3 cut(s) 258, 302, 1168
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 736
HaeIII GGCC 3 cut(s) 562, 884, 980
HapII CCGG 4 cut(s) 66, 135, 321, 563
HgaI GACGC 1 cut(s) 492
HhaI GCGC 2 cut(s) 735, 832
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 7 cut(s) 209, 532, 632, 998, 1065, 1201, 1358
Hin6I GCGC 2 cut(s) 733, 830
HinP1I GCGC 2 cut(s) 733, 830
HindIII AAGCTT 3 cut(s) 81, 822, 909
HinfI GANTC 3 cut(s) 16, 190, 341
HpaII CCGG 4 cut(s) 66, 135, 321, 563
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 4 cut(s) 371, 540, 686, 867
Hpy188I TCNGA 6 cut(s) 157, 492, 660, 847, 1093, 1300
Hpy188III TCNNGA 5 cut(s) 117, 164, 629, 668, 1082
Hpy8I GTNNAC 4 cut(s) 371, 540, 686, 867
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 232, 326, 346, 1079
HpyCH4III ACNGT 3 cut(s) 382, 1048, 1431
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 5 cut(s) 266, 307, 977, 1255, 1264
HpyF3I CTNAG 6 cut(s) 12, 489, 620, 729, 846, 1025
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 7 cut(s) 209, 532, 632, 998, 1065, 1201, 1358
HspAI GCGC 2 cut(s) 733, 830
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 4 cut(s) 492, 817, 964, 1088
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 4 cut(s) 670, 1003, 1345, 1396
Lsp1109I GCAGC 3 cut(s) 269, 288, 1179
LweI GCATC 3 cut(s) 161, 161, 1276
MaeI CTAG 2 cut(s) 29, 423
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 3 cut(s) 586, 608, 811
MalI GATC 4 cut(s) 494, 819, 966, 1090
MboI GATC 4 cut(s) 492, 817, 964, 1088
MboII GAAGA 9 cut(s) 40, 83, 86, 89, 99, 302, 407, 477, 998
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 2 cut(s) 492, 1088
MhlI GDGCHC 2 cut(s) 402, 936
MluCI AATT 8 cut(s) 139, 159, 374, 414, 711, 1094, 1156, 1475
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 134
MroXI GAANNNNTTC 2 cut(s) 214, 432
MseI TTAA 4 cut(s) 329, 690, 725, 893
MslI CAYNNNNRTG 3 cut(s) 60, 465, 1060
MspA1I CMGCKG 1 cut(s) 1215
MspCI CTTAAG 1 cut(s) 689
MspI CCGG 4 cut(s) 66, 135, 321, 563
MspR9I CCNGG 6 cut(s) 254, 321, 386, 564, 1002, 1284
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 4 cut(s) 254, 386, 1002, 1284
MwoI GCNNNNNNNGC 5 cut(s) 266, 307, 977, 1255, 1264
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 2 cut(s) 321, 564
NdeII GATC 4 cut(s) 492, 817, 964, 1088
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 7 cut(s) 209, 532, 632, 998, 1065, 1201, 1358
NlaIV GGNNCC 5 cut(s) 672, 696, 933, 1053, 1179
NmuCI GTSAC 2 cut(s) 586, 608
NspI RCATGY 2 cut(s) 998, 1201
PagI TCATGA 1 cut(s) 628
PceI AGGCCT 1 cut(s) 884
PciSI GCTCTTC 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 136
PdmI GAANNNNTTC 2 cut(s) 214, 432
PfeI GAWTC 2 cut(s) 16, 190
PflMI CCANNNNNTGG 1 cut(s) 961
PkrI GCNGC 3 cut(s) 259, 303, 1169
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 4 cut(s) 252, 384, 1000, 1282
PspGI CCWGG 4 cut(s) 252, 384, 1000, 1282
PspN4I GGNNCC 5 cut(s) 672, 696, 933, 1053, 1179
PspPI GGNCC 2 cut(s) 560, 979
PstNI CAGNNNCTG 2 cut(s) 301, 1046
PsuI RGATCY 2 cut(s) 492, 1088
PvuII CAGCTG 1 cut(s) 1215
RsaI GTAC 3 cut(s) 1006, 1211, 1241
RsaNI GTAC 3 cut(s) 1005, 1210, 1240
RseI CAYNNNNRTG 3 cut(s) 60, 465, 1060
SacI GAGCTC 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 329, 690, 725, 893
SatI GCNGC 3 cut(s) 258, 302, 1168
Sau3AI GATC 4 cut(s) 492, 817, 964, 1088
Sau96I GGNCC 2 cut(s) 560, 979
ScaI AGTACT 1 cut(s) 1241
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 6 cut(s) 254, 321, 386, 564, 1002, 1284
SduI GDGCHC 2 cut(s) 402, 936
SfaNI GCATC 3 cut(s) 161, 161, 1276
SfcI CTRYAG 1 cut(s) 919
SmiMI CAYNNNNRTG 3 cut(s) 60, 465, 1060
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 8 cut(s) 139, 159, 374, 414, 711, 1094, 1156, 1475
SseBI AGGCCT 1 cut(s) 884
SsiI CCGC 2 cut(s) 1385, 1468
SspMI CTAG 2 cut(s) 29, 423
SstI GAGCTC 1 cut(s) 402
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 6 cut(s) 252, 319, 384, 562, 1000, 1282
StyI CCWWGG 2 cut(s) 347, 1122
TaaI ACNGT 3 cut(s) 382, 1048, 1431
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 87, 574
TasI AATT 8 cut(s) 139, 159, 374, 414, 711, 1094, 1156, 1475
TatI WGTACW 2 cut(s) 1209, 1239
TfiI GAWTC 2 cut(s) 16, 190
Tru1I TTAA 4 cut(s) 329, 690, 725, 893
Tru9I TTAA 4 cut(s) 329, 690, 725, 893
TscAI CASTG 4 cut(s) 48, 517, 547, 598
TseFI GTSAC 2 cut(s) 586, 608
TseI GCWGC 3 cut(s) 257, 301, 1167
Tsp45I GTSAC 2 cut(s) 586, 608
TspDTI ATGAA 6 cut(s) 132, 251, 420, 617, 1026, 1050
TspGWI ACGGA 2 cut(s) 247, 1424
TspRI CASTG 4 cut(s) 48, 517, 547, 598
Van91I CCANNNNNTGG 1 cut(s) 961
Vha464I CTTAAG 1 cut(s) 689
XapI RAATTY 2 cut(s) 159, 1094
XceI RCATGY 2 cut(s) 998, 1201
XmnI GAANNNNTTC 2 cut(s) 214, 432
XspI CTAG 2 cut(s) 29, 423
ZrmI AGTACT 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.