AT1G10480

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016177
Physical Location & Seq
Forward (+)
3449567 .. 3451226
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10480.1

Sequence Viewer

Length: 636 bp
ATGTCTATAAATCCGACAATGTCTCGTACTGGCGAAAGTTCTTCAGGTTCGTCCTCCGACAAGACGATAAAGCTATTCGGCTTCGAACTCATCAGCGGCAGTCGTACGCCGGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGATGAAAAGACACGAGTGCCAATACTGCGGTAAAGAGTTTGCAAATTCTCAAGCCTTAGGAGGTCACCAAAACGCTCACAAGAAGGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTCGGCGAGCCAGCATCGGCTATTATCTCACCAACCACCAACAACCCATAACGACGTCATTTCAGAGACAATACAAAACGCCGTCGTATTGTGCATTCTCCTCCATGCACGTGAATAATGATCAGATGGGTGTGTACAACGAAGATTGGTCGTCGAGGTCGTCGCAGATTAACTTCGGTAATAATGACACGTGCCAAGATCTTAATGAACAAAGCGGTGAGATGGGTAAGCTGTACGGTGTTCGACCGAACATGATTCAGTTCCAGAGAGATCTGAGTTCTCGTTCTGATCAGATGAGAAGTATTAACTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATGCGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

211

Amino Acids

23.59

Weight (kDa)

9.06

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 59 - 85 9.2e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10480
fragaria_vesca FvH4_4g35130
malus_domestica MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica Prupe.1G260700_v2.0.a1
pyrus_communis pycom16g07380
rosa_laevigata RLG00000005807
rosa_multiflora Rmu_sc0012443.1_g000007
rosa_roxburghii Rroxscaffold_5G00385250
rosa_rugosa Rorug04G0354900
rosa_samantha Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana Rw4G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 158, 344
AciI CCGC 5 cut(s) 96, 125, 195, 501, 629
AclWI GGATC 1 cut(s) 609
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 27, 260
AcvI CACGTG 2 cut(s) 397, 477
AcyI GRCGYC 2 cut(s) 155, 341
AfaI GTAC 4 cut(s) 28, 106, 422, 521
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 2 cut(s) 262, 284
AluBI AGCT 5 cut(s) 73, 138, 280, 287, 517
AluI AGCT 5 cut(s) 73, 138, 280, 287, 517
Alw21I GWGCWC 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 27, 346
AlwI GGATC 1 cut(s) 609
ApoI RAATTY 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsuHPI GGTGA 3 cut(s) 224, 307, 515
AsuII TTCGAA 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 223
BanII GRGCYC 1 cut(s) 140
BauI CACGAG 1 cut(s) 179
BbrPI CACGTG 2 cut(s) 397, 477
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 2 cut(s) 406, 502
BceAI ACGGC 2 cut(s) 138, 352
BclI TGATCA 2 cut(s) 406, 574
BcoDI GTCTC 2 cut(s) 27, 346
BfaI CTAG 1 cut(s) 611
BglII AGATCT 2 cut(s) 484, 556
BisI GCNGC 2 cut(s) 97, 630
BlsI GCNGC 2 cut(s) 98, 631
BmsI GCATC 2 cut(s) 309, 616
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 201
BsaAI YACGTR 2 cut(s) 397, 477
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 2 cut(s) 155, 341
Bse1I ACTGG 1 cut(s) 34
Bse21I CCTNAGG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 606
BseJI GATNNNNATC 1 cut(s) 606
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 533
BsiEI CGRYCG 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 110, 621
BsiWI CGTACG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 27, 346
BsmI GAATGC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 5 cut(s) 406, 484, 556, 574, 601
BspACI CCGC 5 cut(s) 96, 125, 195, 501, 629
BspCNI CTCAG 1 cut(s) 552
BspPI GGATC 1 cut(s) 609
BspT104I TTCGAA 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 1 cut(s) 34
BssMI GATC 5 cut(s) 406, 484, 556, 574, 601
BssNI GRCGYC 2 cut(s) 155, 341
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 166, 524
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 2 cut(s) 155, 341
BstAUI TGTACA 1 cut(s) 420
BstBAI YACGTR 2 cut(s) 397, 477
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 294, 298
BstDEI CTNAG 2 cut(s) 223, 560
BstEII GGTNACC 1 cut(s) 230
BstKTI GATC 5 cut(s) 409, 487, 559, 577, 604
BstMAI GTCTC 2 cut(s) 27, 346
BstMBI GATC 5 cut(s) 406, 484, 556, 574, 601
BstMCI CGRYCG 1 cut(s) 533
BstMWI GCNNNNNNNGC 3 cut(s) 192, 293, 626
BstPI GGTNACC 1 cut(s) 230
BstX2I RGATCY 3 cut(s) 484, 556, 601
BstYI RGATCY 3 cut(s) 484, 556, 601
Bsu36I CCTNAGG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 294, 298
Csp6I GTAC 4 cut(s) 27, 105, 421, 520
CviAII CATG 2 cut(s) 391, 538
CviQI GTAC 4 cut(s) 27, 105, 421, 520
DdeI CTNAG 2 cut(s) 223, 560
DpnI GATC 5 cut(s) 408, 486, 558, 576, 603
DpnII GATC 5 cut(s) 406, 484, 556, 574, 601
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 27, 260
Eco72I CACGTG 2 cut(s) 397, 477
Eco81I CCTNAGG 1 cut(s) 223
Eco91I GGTNACC 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 2 cut(s) 394, 541
FaiI YATR 5 cut(s) 8, 335, 392, 539, 634
FatI CATG 2 cut(s) 390, 537
FbaI TGATCA 2 cut(s) 406, 574
Fnu4HI GCNGC 2 cut(s) 97, 630
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 97, 630
FspBI CTAG 1 cut(s) 611
GluI GCNGC 2 cut(s) 97, 630
HapII CCGG 2 cut(s) 110, 621
Hin1I GRCGYC 2 cut(s) 155, 341
Hin1II CATG 2 cut(s) 394, 541
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 1 cut(s) 541
HpaI GTTAAC 1 cut(s) 162
HpaII CCGG 2 cut(s) 110, 621
HphI GGTGA 3 cut(s) 224, 307, 515
Hpy166II GTNNAC 3 cut(s) 144, 162, 421
Hpy188I TCNGA 7 cut(s) 15, 58, 351, 411, 561, 574, 579
Hpy188III TCNNGA 2 cut(s) 118, 550
Hpy8I GTNNAC 3 cut(s) 144, 162, 421
Hpy99I CGWCG 7 cut(s) 124, 157, 160, 343, 373, 442, 451
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 166, 524
HpyCH4IV ACGT 4 cut(s) 155, 341, 396, 476
HpyCH4V TGCA 3 cut(s) 209, 380, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 293, 626
HpyF3I CTNAG 2 cut(s) 223, 560
HpySE526I ACGT 4 cut(s) 155, 341, 396, 476
Hsp92I GRCGYC 2 cut(s) 155, 341
Hsp92II CATG 2 cut(s) 394, 541
Ksp22I TGATCA 2 cut(s) 406, 574
KspAI GTTAAC 1 cut(s) 162
Kzo9I GATC 5 cut(s) 406, 484, 556, 574, 601
LpnPI CCDG 6 cut(s) 15, 30, 123, 310, 563, 584
LweI GCATC 2 cut(s) 309, 616
MaeI CTAG 1 cut(s) 611
MaeII ACGT 4 cut(s) 155, 341, 396, 476
MaeIII GTNAC 1 cut(s) 230
MalI GATC 5 cut(s) 408, 486, 558, 576, 603
MboI GATC 5 cut(s) 406, 484, 556, 574, 601
MboII GAAGA 6 cut(s) 33, 274, 277, 280, 440, 596
MflI RGATCY 3 cut(s) 484, 556, 601
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 38, 81
MnlI CCTC 6 cut(s) 64, 221, 249, 264, 397, 435
MseI TTAA 4 cut(s) 161, 456, 489, 591
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 2 cut(s) 110, 621
Mva1269I GAATGC 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 192, 293, 626
NdeII GATC 5 cut(s) 406, 484, 556, 574, 601
NlaIII CATG 2 cut(s) 394, 541
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 443
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 541
Pfl23II CGTACG 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 98, 631
PmaCI CACGTG 2 cut(s) 397, 477
PmlI CACGTG 2 cut(s) 397, 477
Ppu21I YACGTR 2 cut(s) 397, 477
Psp124BI GAGCTC 1 cut(s) 140
PspCI CACGTG 2 cut(s) 397, 477
PspEI GGTNACC 1 cut(s) 230
PspLI CGTACG 1 cut(s) 104
PsuI RGATCY 3 cut(s) 484, 556, 601
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 4 cut(s) 28, 106, 422, 521
RsaNI GTAC 4 cut(s) 27, 105, 421, 520
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 161, 456, 489, 591
SatI GCNGC 2 cut(s) 97, 630
Sau3AI GATC 5 cut(s) 406, 484, 556, 574, 601
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 2 cut(s) 309, 616
SfuI TTCGAA 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 1 cut(s) 211
SsiI CCGC 5 cut(s) 96, 125, 195, 501, 629
SspMI CTAG 1 cut(s) 611
SstI GAGCTC 1 cut(s) 140
TaaI ACNGT 2 cut(s) 166, 524
TaiI ACGT 4 cut(s) 158, 344, 399, 479
TaqI TCGA 3 cut(s) 84, 440, 529
TaqII GACCGA 1 cut(s) 547
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 420
TauI GCSGC 2 cut(s) 99, 632
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 4 cut(s) 161, 456, 489, 591
Tru9I TTAA 4 cut(s) 161, 456, 489, 591
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 185, 507, 596
TspRI CASTG 1 cut(s) 171
Tth111I GACNNNGTC 1 cut(s) 19
XapI RAATTY 1 cut(s) 211
XspI CTAG 1 cut(s) 611
ZraI GACGTC 2 cut(s) 156, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.