Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016177

Physical Location & Seq

Genomic Coordinates Reverse (-)

26961662 .. 26962928

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAAAAGGGTCATGATCAGGATCTTGACCAAAACCATGCCCATTCTGCTGGATCTTGCGTTGAGAAGAAGCTCAGGCTTTTTGGGTTTGAGCTGAGCCCAAGCAAGAATGAGGACAGCTCCATCAAAGGCTTTGCAGAAGGAGATGAGAGTGTAAATTCATCGAACTCCATTTCGTATGGAAGGGAGGTTCATATGAACAAACCTGCCAGCAATGAGAAAAGCTCAACCAGTGAAGCAGATGAAAAGAAGTTTGAGTGCCAATATTGCTTCAAGGAATTTGCAAACTCACAGGCATTGGGAGGTCATCAGAATGCGCACAAGAAGGAGAGGATGAAGAAGAAGAGGCTTCAGCTTCAAGCCAGGAAGGCCAGCATCAACTATTACCTCCAGCCTTTCCAAACCAACAACCTTGGCAATGGCCTTGCTTTTCACCATGGCTCTTCACCATCTTCGTGGTTTTATGACCCTTCCTCATATGTTATAAACCCTGATCAGTTTACACTCCATGAAGAATCCCAGATCAGTTTCAACCCGTTTGATCAAAATGGATCAAGTGGGTCCCAGGTATCCAATTGGTATGCTCTGCCACCTCAGTTCTCTTCCCAAACAGATGAACAAGATGCATCTAATAACAAGTTCACTTTAACACAAACAGACAGATCAGGAGAAAGCAGGCCTGTCGTCTTTAAGCCTTCCCCTTTATCTGCTTCAACTCAAAGCTGTAAACCTTTGGATCTTCAGTTAGGCCTAGGCTTGCCATCAAAGATACGAAGATCCTCTAGAAGTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010468 GO:0010476 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0044212 GO:0048364 GO:0048468 GO:0048469 GO:0048506 GO:0048509 GO:0048510 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

266

Amino Acids

29.57

Weight (kDa)

6.76

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10480
fragaria_vesca	FvH4_4g35130
malus_domestica	MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica	Prupe.1G260700_v2.0.a1
pyrus_communis	pycom16g07380
rosa_laevigata	RLG00000005807
rosa_multiflora	Rmu_sc0012443.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385250
rosa_rugosa	Rorug04G0354900
rosa_samantha	Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana	Rw4G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	214
AclWI	GGATC	5 cut(s)	30, 61, 559, 744, 771
AcsI	RAATTY	2 cut(s)	157, 278
AcuI	CTGAAG	2 cut(s)	335, 725
AgsI	TTSAA	4 cut(s)	274, 359, 532, 714
AjnI	CCWGG	2 cut(s)	362, 564
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	6 cut(s)	73, 94, 120, 225, 355, 723
AluI	AGCT	6 cut(s)	73, 94, 120, 225, 355, 723
AlwI	GGATC	5 cut(s)	30, 61, 559, 744, 771
AoxI	GGCC	4 cut(s)	369, 421, 677, 748
ApoI	RAATTY	2 cut(s)	157, 278
AspA2I	CCTAGG	1 cut(s)	751
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	425, 438
AvaII	GGWCC	1 cut(s)	561
AvrII	CCTAGG	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	101
BccI	CCATC	3 cut(s)	131, 457, 769
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciT130I	CCWGG	2 cut(s)	364, 566
BciVI	GTATCC	1 cut(s)	580
BclI	TGATCA	3 cut(s)	16, 493, 541
BfaI	CTAG	2 cut(s)	752, 783
BfuAI	ACCTGC	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	580
BglI	GCCNNNNNGGC	1 cut(s)	368
BlnI	CCTAGG	1 cut(s)	751
BlpI	GCTNAGC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	364, 566
Bme18I	GGWCC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	561
BmiI	GGNNCC	2 cut(s)	562, 563
BmrFI	CCNGG	2 cut(s)	364, 566
BmsI	GCATC	3 cut(s)	384, 613, 635
BplI	GAGNNNNNCTC	4 cut(s)	104, 136, 209, 241
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	412, 436, 564, 751
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	220, 424
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	364, 566
BseDI	CCNNGG	4 cut(s)	412, 436, 564, 751
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	21
BseMI	GCAATG	2 cut(s)	220, 424
BseMII	CTCAG	3 cut(s)	86, 88, 608
BseNI	ACTGG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	371, 423, 679, 750
BslFI	GGGAC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	371, 423, 679, 750
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp1720I	GCTNAGC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	436
BspANI	GGCC	4 cut(s)	371, 423, 679, 750
BspCNI	CTCAG	3 cut(s)	87, 87, 607
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	562, 563
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	5 cut(s)	30, 61, 559, 744, 771
BspQI	GCTCTTC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	220, 424
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	412, 436, 564, 751
BssT1I	CCWWGG	3 cut(s)	412, 436, 751
Bst2UI	CCWGG	2 cut(s)	364, 566
Bst6I	CTCTTC	3 cut(s)	338, 448, 607
BstC8I	GCNNGC	4 cut(s)	211, 373, 677, 758
BstDEI	CTNAG	3 cut(s)	74, 95, 594
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 267, 368
BstNI	CCWGG	2 cut(s)	364, 566
BstSCI	CCNGG	2 cut(s)	362, 564
BstX2I	RGATCY	4 cut(s)	22, 53, 736, 776
BstXI	CCANNNNNNTGG	2 cut(s)	50, 456
BstYI	RGATCY	4 cut(s)	22, 53, 736, 776
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	4 cut(s)	371, 423, 679, 750
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	4 cut(s)	211, 373, 677, 758
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	561
CviAII	CATG	4 cut(s)	14, 38, 437, 509
DdeI	CTNAG	3 cut(s)	74, 95, 594
Eam1104I	CTCTTC	3 cut(s)	338, 448, 607
EarI	CTCTTC	3 cut(s)	338, 448, 607
Eco130I	CCWWGG	3 cut(s)	412, 436, 751
Eco147I	AGGCCT	2 cut(s)	679, 750
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	561
Eco57I	CTGAAG	2 cut(s)	335, 725
EcoO109I	RGGNCCY	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	362, 564
EcoT14I	CCWWGG	3 cut(s)	412, 436, 751
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	3 cut(s)	412, 436, 751
FaeI	CATG	4 cut(s)	17, 41, 440, 512
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	4 cut(s)	13, 37, 436, 508
FauNDI	CATATG	2 cut(s)	195, 478
FbaI	TGATCA	3 cut(s)	16, 493, 541
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	101
FspAI	RTGCGCAY	1 cut(s)	318
FspBI	CTAG	2 cut(s)	752, 783
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	4 cut(s)	371, 423, 679, 750
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	17, 41, 440, 512
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	1 cut(s)	515
HphI	GGTGA	2 cut(s)	425, 438
Hpy166II	GTNNAC	3 cut(s)	501, 642, 728
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	5 cut(s)	14, 20, 26, 666, 783
Hpy8I	GTNNAC	3 cut(s)	501, 642, 728
HpyAV	CCTTC	6 cut(s)	134, 177, 319, 361, 480, 705
HpyCH4V	TGCA	3 cut(s)	137, 284, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 267, 368
HpyF3I	CTNAG	3 cut(s)	74, 95, 594
Hsp92II	CATG	4 cut(s)	17, 41, 440, 512
HspAI	GCGC	1 cut(s)	317
KflI	GGGWCCC	1 cut(s)	561
Ksp22I	TGATCA	3 cut(s)	16, 493, 541
LguI	GCTCTTC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	125
LweI	GCATC	3 cut(s)	384, 613, 635
MaeI	CTAG	2 cut(s)	752, 783
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	4 cut(s)	22, 53, 736, 776
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	3 cut(s)	157, 278, 574
MnlI	CCTC	9 cut(s)	106, 181, 296, 324, 339, 398, 484, 603, 790
Mph1103I	ATGCAT	1 cut(s)	628
MseI	TTAA	3 cut(s)	647, 690, 796
MslI	CAYNNNNRTG	2 cut(s)	312, 454
MspR9I	CCNGG	2 cut(s)	364, 566
MunI	CAATTG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	364, 566
MwoI	GCNNNNNNNGC	3 cut(s)	47, 267, 368
NcoI	CCATGG	1 cut(s)	436
NdeI	CATATG	2 cut(s)	195, 478
NlaIII	CATG	4 cut(s)	17, 41, 440, 512
NlaIV	GGNNCC	2 cut(s)	562, 563
NsbI	TGCGCA	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	628
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	2 cut(s)	679, 750
PciSI	GCTCTTC	1 cut(s)	448
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	515
PpuMI	RGGWCCY	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	362, 564
PspGI	CCWGG	2 cut(s)	362, 564
PspN4I	GGNNCC	2 cut(s)	562, 563
PspPI	GGNCC	1 cut(s)	561
PspPPI	RGGWCCY	1 cut(s)	561
PsuI	RGATCY	4 cut(s)	22, 53, 736, 776
RseI	CAYNNNNRTG	2 cut(s)	312, 454
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	647, 690, 796
Sau96I	GGNCC	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	364, 566
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	384, 613, 635
SinI	GGWCC	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	312, 454
Sse9I	AATT	3 cut(s)	157, 278, 574
SseBI	AGGCCT	2 cut(s)	679, 750
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	2 cut(s)	752, 783
StuI	AGGCCT	2 cut(s)	679, 750
StyD4I	CCNGG	2 cut(s)	362, 564
StyI	CCWWGG	3 cut(s)	412, 436, 751
TaqI	TCGA	1 cut(s)	164
TasI	AATT	3 cut(s)	157, 278, 574
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	3 cut(s)	647, 690, 796
Tru9I	TTAA	3 cut(s)	647, 690, 796
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	7 cut(s)	150, 182, 212, 258, 350, 525, 630
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	561
XapI	RAATTY	2 cut(s)	157, 278
XbaI	TCTAGA	1 cut(s)	782
XmaJI	CCTAGG	1 cut(s)	751
XspI	CTAG	2 cut(s)	752, 783
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.