Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016177

Physical Location & Seq

Genomic Coordinates Reverse (-)

64338123 .. 64339251

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAAATACCTGGGAATCTGAAGATCAACAAGGCTACTCTGCCGGGTCTTCCGTCGATCATGACCACAAGAAGCTCAAGCTATTCGGGTTTGAGCTCAATCCGCACAAGAACGTCGACGAAAATATCAAAGCCTGTGCTGAAGGAGATGAGAGCGTAAATTCGTCGAACACATGGAAAGCATCAACCAGCAGCGAAGCCGAGCAACTCGACAACAAGAAGTTCGAGTGTCAATACTGTTTCAAGGAGTTTGCAAATTCACAAGCGCTTGGTGGACATCAAAATGCGCACAAGAAGGAGAGGATGAAGAAGAAGAGGCTTCAGCTCCAAGCAAGAAAGGCCAGCATCAACTACTACCTCCAACCTTTCCAGAATTTCAATCATCCTCATGGTTCTGCTGCATCAGCTTCATGGTTTTACGATCCCTCCTCGTATGTTAACAATACCGAACAGTTTACGCTCCATGAAGAATCCCAAATCAGCTTCAACCCGTATGATCAAAATGGATCGAACGGGTCGGCCCAAGTTTCTAATTGGTATGCTTTACCTGGAGGAGCTCAGTTTCCTTACCAGCAAGAACAAGATGATCATTCATCTAAGTTCACTTTGACACAAACAGATAGATCAGGAGAAAGCAGACCAGTGATCTTCAATAAGCCTTCGTCTTTACCTGCTTCGACTACTCAAAGTTCATGTAAACCTTTGGATCTTCAGTTAGGGATTGGCTTGCCATCGAAGATACAAAGATCATCTAGAAGTGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010468 GO:0010476 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0044212 GO:0048364 GO:0048468 GO:0048469 GO:0048506 GO:0048509 GO:0048510 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

255

Amino Acids

28.69

Weight (kDa)

6.14

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10480
fragaria_vesca	FvH4_4g35130
malus_domestica	MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica	Prupe.1G260700_v2.0.a1
pyrus_communis	pycom16g07380
rosa_laevigata	RLG00000005807
rosa_multiflora	Rmu_sc0012443.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385250
rosa_rugosa	Rorug04G0354900
rosa_samantha	Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana	Rw4G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	3 cut(s)	416, 514, 714
AcsI	RAATTY	3 cut(s)	160, 256, 373
AcuI	CTGAAG	4 cut(s)	42, 162, 305, 695
AfeI	AGCGCT	1 cut(s)	267
AgsI	TTSAA	4 cut(s)	244, 379, 487, 652
AjnI	CCWGG	2 cut(s)	11, 547
AluBI	AGCT	7 cut(s)	76, 82, 97, 325, 407, 483, 557
AluI	AGCT	7 cut(s)	76, 82, 97, 325, 407, 483, 557
Alw21I	GWGCWC	2 cut(s)	99, 559
AlwI	GGATC	3 cut(s)	416, 514, 714
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	2 cut(s)	339, 519
ApeKI	GCWGC	2 cut(s)	192, 398
ApoI	RAATTY	3 cut(s)	160, 256, 373
AspLEI	GCGC	2 cut(s)	268, 289
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	46
BanII	GRGCYC	2 cut(s)	99, 559
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	99, 559
BbvI	GCAGC	2 cut(s)	204, 385
BccI	CCATC	1 cut(s)	739
BciT130I	CCWGG	2 cut(s)	13, 549
BclI	TGATCA	2 cut(s)	496, 586
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	193, 399
BlsI	GCNGC	2 cut(s)	194, 400
Bme1390I	CCNGG	3 cut(s)	13, 46, 549
BmgT120I	GGNCC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	13, 46, 549
BmsI	GCATC	3 cut(s)	191, 354, 410
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bse1I	ACTGG	1 cut(s)	641
BseBI	CCWGG	2 cut(s)	13, 549
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	309, 382
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	2 cut(s)	418, 567
BseXI	GCAGC	2 cut(s)	204, 385
BshFI	GGCC	2 cut(s)	341, 521
BsiHKAI	GWGCWC	2 cut(s)	99, 559
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	341, 521
Bsp1286I	GDGCHC	2 cut(s)	99, 559
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	341, 521
BspCNI	CTCAG	1 cut(s)	571
BspHI	TCATGA	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	3 cut(s)	416, 514, 714
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	13, 549
Bst4CI	ACNGT	2 cut(s)	239, 453
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	343, 728
BstDEI	CTNAG	2 cut(s)	558, 597
BstF5I	GGATG	2 cut(s)	309, 382
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 338, 404
BstNI	CCWGG	2 cut(s)	13, 549
BstSCI	CCNGG	3 cut(s)	11, 44, 547
BstV1I	GCAGC	2 cut(s)	204, 385
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	341, 521
BtsCI	GGATG	2 cut(s)	309, 382
BtsIMutI	CAGTG	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	343, 728
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	2 cut(s)	268, 289
Cfr13I	GGNCC	1 cut(s)	520
CviAII	CATG	6 cut(s)	62, 174, 389, 411, 464, 693
DdeI	CTNAG	2 cut(s)	558, 597
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	2 cut(s)	97, 557
Eco24I	GRGCYC	2 cut(s)	99, 559
Eco47III	AGCGCT	1 cut(s)	267
Eco53kI	GAGCTC	2 cut(s)	97, 557
Eco57I	CTGAAG	4 cut(s)	42, 162, 305, 695
EcoICRI	GAGCTC	2 cut(s)	97, 557
EcoRII	CCWGG	2 cut(s)	11, 547
EcoT38I	GRGCYC	2 cut(s)	99, 559
FaeI	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
FaiI	YATR	9 cut(s)	63, 175, 390, 412, 435, 465, 495, 540, 694
FatI	CATG	6 cut(s)	61, 173, 388, 410, 463, 692
FbaI	TGATCA	2 cut(s)	496, 586
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	193, 399
FokI	GGATG	2 cut(s)	316, 369
FriOI	GRGCYC	2 cut(s)	99, 559
Fsp4HI	GCNGC	2 cut(s)	193, 399
FspAI	RTGCGCAY	1 cut(s)	288
FspBI	CTAG	1 cut(s)	753
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	2 cut(s)	267, 288
GluI	GCNGC	2 cut(s)	193, 399
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	341, 521
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	268, 289
Hin1II	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
Hin6I	GCGC	2 cut(s)	266, 287
HinP1I	GCGC	2 cut(s)	266, 287
HincII	GTYRAC	2 cut(s)	118, 439
HindII	GTYRAC	2 cut(s)	118, 439
HinfI	GANTC	2 cut(s)	17, 470
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	6 cut(s)	118, 275, 439, 456, 603, 698
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	4 cut(s)	62, 370, 627, 753
Hpy8I	GTNNAC	6 cut(s)	118, 275, 439, 456, 603, 698
Hpy99I	CGWCG	4 cut(s)	59, 119, 122, 169
HpyAV	CCTTC	3 cut(s)	137, 289, 669
HpyCH4III	ACNGT	2 cut(s)	239, 453
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	254, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 338, 404
HpyF3I	CTNAG	2 cut(s)	558, 597
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
HspAI	GCGC	2 cut(s)	266, 287
Ksp22I	TGATCA	2 cut(s)	496, 586
KspAI	GTTAAC	1 cut(s)	439
LmnI	GCTCC	3 cut(s)	330, 465, 554
Lsp1109I	GCAGC	2 cut(s)	204, 385
LweI	GCATC	3 cut(s)	191, 354, 410
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	114
MboII	GAAGA	9 cut(s)	35, 42, 319, 322, 325, 479, 640, 701, 748
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	99, 559
MluCI	AATT	4 cut(s)	160, 256, 373, 532
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	7 cut(s)	294, 309, 368, 396, 436, 439, 545
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	2 cut(s)	282, 387
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	3 cut(s)	13, 46, 549
MvaI	CCWGG	2 cut(s)	13, 549
MwoI	GCNNNNNNNGC	3 cut(s)	103, 338, 404
NciI	CCSGG	1 cut(s)	46
NlaIII	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
NmeAIII	GCCGAG	1 cut(s)	226
NsbI	TGCGCA	1 cut(s)	288
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	17, 470
PkrI	GCNGC	2 cut(s)	194, 400
Psp124BI	GAGCTC	2 cut(s)	99, 559
Psp6I	CCWGG	2 cut(s)	11, 547
PspGI	CCWGG	2 cut(s)	11, 547
PspPI	GGNCC	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	706
RseI	CAYNNNNRTG	2 cut(s)	282, 387
SacI	GAGCTC	2 cut(s)	99, 559
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	193, 399
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	3 cut(s)	13, 46, 549
SduI	GDGCHC	2 cut(s)	99, 559
SfaNI	GCATC	3 cut(s)	191, 354, 410
SgrDI	CGTCGACG	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	282, 387
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	4 cut(s)	160, 256, 373, 532
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	1 cut(s)	753
SstI	GAGCTC	2 cut(s)	99, 559
StyD4I	CCNGG	3 cut(s)	11, 44, 547
TaaI	ACNGT	2 cut(s)	239, 453
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	8 cut(s)	57, 117, 167, 210, 225, 509, 677, 734
TasI	AATT	4 cut(s)	160, 256, 373, 532
TfiI	GAWTC	2 cut(s)	17, 470
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	2 cut(s)	192, 398
TspDTI	ATGAA	5 cut(s)	320, 399, 480, 582, 681
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	648
XapI	RAATTY	3 cut(s)	160, 256, 373
XbaI	TCTAGA	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.