Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016177

Physical Location & Seq

Genomic Coordinates Forward (+)

6057983 .. 6058774

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1086000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCAATCGAAAACCTATTCCGCAGGATCCTGTGTTGAGAAGAAGCTCAGGCTTTTCGGGTTTGAACTGAATCCACGTAGGAATGAAGAAGCCTCCATCAAAGGAGGAGGGTCATCAGCAGAAGGTGGTGGGGATGAAAGTGTAAATTCATCGAACTCTGTCTCACATCCGATAAAATTGGAACGATCTAGAGAGAATGAGAAGAGCTCAACAAGTGAACCAGATGACAAGAAATTCGAGTGCCAATATTGCTTCAAGGAGTTTGCAAATTCACAAGCACTCGGTGGACATCAAAATGCACACAAAAAGGAGAGAATGAAGAAGAAAAGGCTCCAGCTTCAAGCCAGAAAAGCCAGCATCAACAGTTACCTCCAGCCTTTCCAAACCTTCCACCACCATGGTTCTACAGCGGCACCGTCGTGGTTCTACGACCCTTCCTCGTATCTCAGTTCTGACCATCCATTCACCCTTCACGAAGAGTCCCGGATCAGTTTCATCCCGTTCGATCAAAATTATGGGTCGTCGAGCGGGTCCCACTCCAAGGTTTCCAATTGGTATTCCATGCCACCTCAGCAGCAGTTTCCTTCTTCCCAGACAGGGGAACAAGATCATCTTACAAACCCTAATAAGTTTACGTTGACGCAAACGGACAGATCGGGAGAAAGCAGGCCTGTCGTCTTCATGCCTTCCCCTTTGTCTGCTTCGACTCATCAGAGCTGTAAGCCGTTAGATCTTCAGTTAGGGCTCGGCTCGCCGGCGAAGATTCAGAGATCTTCTAGAAGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010468 GO:0010476 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0044212 GO:0048364 GO:0048468 GO:0048469 GO:0048506 GO:0048509 GO:0048510 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

264

Amino Acids

29.34

Weight (kDa)

8.95

Isoelectric Point (pI)

69.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10480
fragaria_vesca	FvH4_4g35130
malus_domestica	MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica	Prupe.1G260700_v2.0.a1
pyrus_communis	pycom16g07380
rosa_laevigata	RLG00000005807
rosa_multiflora	Rmu_sc0012443.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385250
rosa_rugosa	Rorug04G0354900
rosa_samantha	Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana	Rw4G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AccBSI	CCGCTC	1 cut(s)	528
AciI	CCGC	3 cut(s)	21, 410, 528
AclWI	GGATC	3 cut(s)	21, 34, 494
AcsI	RAATTY	3 cut(s)	145, 233, 268
AcuI	CTGAAG	1 cut(s)	719
AdeI	CACNNNGTG	1 cut(s)	284
AfiI	CCNNNNNNNGG	3 cut(s)	541, 597, 598
AgsI	TTSAA	3 cut(s)	65, 256, 341
AleI	CACNNNNGTG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	46, 207, 337, 717
AluI	AGCT	4 cut(s)	46, 207, 337, 717
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	3 cut(s)	21, 34, 494
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	3 cut(s)	145, 233, 268
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	209, 747
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	2 cut(s)	104, 465
BceAI	ACGGC	1 cut(s)	709
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BcnI	CCSGG	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	189, 777
BfmI	CTRYAG	1 cut(s)	405
BglII	AGATCT	2 cut(s)	730, 770
BisI	GCNGC	2 cut(s)	411, 575
BlsI	GCNGC	2 cut(s)	412, 576
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	5 cut(s)	28, 332, 414, 532, 533
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	670
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	2 cut(s)	317, 356
Bpu10I	CCTNAGC	2 cut(s)	47, 570
BpuMI	CCSGG	1 cut(s)	484
BsaAI	YACGTR	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	397, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	541, 597, 598
Bse118I	RCCGGY	1 cut(s)	754
BseDI	CCNNGG	2 cut(s)	397, 540
BseGI	GGATG	4 cut(s)	139, 166, 457, 495
BseLI	CCNNNNNNNGG	3 cut(s)	541, 597, 598
BseMII	CTCAG	3 cut(s)	61, 460, 584
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	586
BshFI	GGCC	1 cut(s)	670
BshNI	GGYRCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	484, 755
BslFI	GGGAC	2 cut(s)	466, 517
BslI	CCNNNNNNNGG	3 cut(s)	541, 597, 598
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	466, 517
BsnI	GGCC	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	209, 747
Bsp143I	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	3 cut(s)	21, 410, 528
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	3 cut(s)	60, 459, 583
BspLI	GGNNCC	5 cut(s)	28, 332, 414, 532, 533
BspPI	GGATC	3 cut(s)	21, 34, 494
BspQI	GCTCTTC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	412
BsrBI	CCGCTC	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	754
BssAI	RCCGGY	1 cut(s)	754
BssECI	CCNNGG	2 cut(s)	397, 540
BssMI	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
BssT1I	CCWWGG	2 cut(s)	397, 540
Bst4CI	ACNGT	2 cut(s)	365, 417
Bst6I	CTCTTC	2 cut(s)	197, 471
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	355, 668, 752, 756
BstDEI	CTNAG	3 cut(s)	47, 446, 570
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	4 cut(s)	139, 166, 457, 495
BstKTI	GATC	8 cut(s)	29, 188, 489, 508, 610, 656, 733, 773
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 350, 571, 751
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	1 cut(s)	670
BstX2I	RGATCY	3 cut(s)	26, 730, 770
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	3 cut(s)	26, 730, 770
BsuRI	GGCC	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	4 cut(s)	139, 166, 457, 495
Cac8I	GCNNGC	4 cut(s)	355, 668, 752, 756
Cfr10I	RCCGGY	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	531
CseI	GACGC	1 cut(s)	649
CviAII	CATG	3 cut(s)	398, 562, 682
DdeI	CTNAG	3 cut(s)	47, 446, 570
DpnI	GATC	8 cut(s)	28, 187, 488, 507, 609, 655, 732, 772
DpnII	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
DraIII	CACNNNGTG	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	197, 471
EarI	CTCTTC	2 cut(s)	197, 471
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	397, 540
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	209, 747
Eco47I	GGWCC	1 cut(s)	531
Eco53kI	GAGCTC	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	531
EcoT14I	CCWWGG	2 cut(s)	397, 540
EcoT38I	GRGCYC	2 cut(s)	209, 747
ErhI	CCWWGG	2 cut(s)	397, 540
FaeI	CATG	3 cut(s)	401, 565, 685
FaiI	YATR	4 cut(s)	399, 516, 563, 683
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	466, 517
FatI	CATG	3 cut(s)	397, 561, 681
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	411, 575
FokI	GGATG	4 cut(s)	146, 153, 444, 482
FriOI	GRGCYC	2 cut(s)	209, 747
Fsp4HI	GCNGC	2 cut(s)	411, 575
FspBI	CTAG	2 cut(s)	189, 777
GluI	GCNGC	2 cut(s)	411, 575
GsuI	CTGGAG	2 cut(s)	317, 356
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	2 cut(s)	484, 755
HgaI	GACGC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	401, 565, 685
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HinfI	GANTC	4 cut(s)	70, 479, 706, 763
HpaII	CCGG	2 cut(s)	484, 755
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	4 cut(s)	218, 287, 633, 639
Hpy188I	TCNGA	4 cut(s)	171, 454, 714, 768
Hpy188III	TCNNGA	4 cut(s)	189, 473, 657, 777
Hpy8I	GTNNAC	4 cut(s)	218, 287, 633, 639
Hpy99I	CGWCG	2 cut(s)	421, 526
HpyAV	CCTTC	6 cut(s)	116, 397, 444, 479, 594, 696
HpyCH4III	ACNGT	2 cut(s)	365, 417
HpyCH4IV	ACGT	2 cut(s)	76, 635
HpyCH4V	TGCA	3 cut(s)	4, 266, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 350, 571, 751
HpyF3I	CTNAG	3 cut(s)	47, 446, 570
HpySE526I	ACGT	2 cut(s)	76, 635
Hsp92II	CATG	3 cut(s)	401, 565, 685
KflI	GGGWCCC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	754
KroNI	GCCGGC	1 cut(s)	756
Kzo9I	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	189, 777
MaeII	ACGT	2 cut(s)	76, 635
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	8 cut(s)	28, 187, 488, 507, 609, 655, 732, 772
MbiI	CCGCTC	1 cut(s)	528
MboI	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
MfeI	CAATTG	1 cut(s)	550
MflI	RGATCY	3 cut(s)	26, 730, 770
MhlI	GDGCHC	2 cut(s)	209, 747
MluCI	AATT	6 cut(s)	145, 176, 233, 268, 511, 550
MlyI	GAGTC	2 cut(s)	488, 700
MnlI	CCTC	7 cut(s)	98, 101, 103, 380, 448, 579, 778
MreI	CGCCGGCG	1 cut(s)	754
MroNI	GCCGGC	1 cut(s)	754
MslI	CAYNNNNRTG	3 cut(s)	294, 396, 418
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	484, 755
MspR9I	CCNGG	1 cut(s)	484
MunI	CAATTG	1 cut(s)	550
MwoI	GCNNNNNNNGC	4 cut(s)	249, 350, 571, 751
NaeI	GCCGGC	1 cut(s)	756
NciI	CCSGG	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
NgoMIV	GCCGGC	1 cut(s)	754
NlaIII	CATG	3 cut(s)	401, 565, 685
NlaIV	GGNNCC	5 cut(s)	28, 332, 414, 532, 533
NmeAIII	GCCGAG	1 cut(s)	726
OliI	CACNNNNGTG	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	70, 763
PfoI	TCCNGGA	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	412, 576
PleI	GAGTC	2 cut(s)	487, 700
PpsI	GAGTC	2 cut(s)	487, 700
Ppu21I	YACGTR	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	531
PspN4I	GGNNCC	5 cut(s)	28, 332, 414, 532, 533
PspPI	GGNCC	1 cut(s)	531
PspPPI	RGGWCCY	1 cut(s)	531
PsuI	RGATCY	3 cut(s)	26, 730, 770
RseI	CAYNNNNRTG	3 cut(s)	294, 396, 418
SacI	GAGCTC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	197
SatI	GCNGC	2 cut(s)	411, 575
Sau3AI	GATC	8 cut(s)	26, 185, 486, 505, 607, 653, 730, 770
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	488, 700
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	209, 747
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	405
SgrAI	CRCCGGYG	1 cut(s)	754
SinI	GGWCC	1 cut(s)	531
SmiMI	CAYNNNNRTG	3 cut(s)	294, 396, 418
Sse9I	AATT	6 cut(s)	145, 176, 233, 268, 511, 550
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	3 cut(s)	21, 410, 528
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	2 cut(s)	189, 777
SstI	GAGCTC	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	2 cut(s)	397, 540
TaaI	ACNGT	2 cut(s)	365, 417
TaiI	ACGT	2 cut(s)	79, 638
TaqI	TCGA	6 cut(s)	8, 152, 237, 504, 524, 704
TasI	AATT	6 cut(s)	145, 176, 233, 268, 511, 550
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	70, 763
TseI	GCWGC	1 cut(s)	574
TspDTI	ATGAA	6 cut(s)	99, 138, 150, 332, 484, 670
TspGWI	ACGGA	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	531
XapI	RAATTY	3 cut(s)	145, 233, 268
XbaI	TCTAGA	2 cut(s)	188, 776
XspI	CTAG	2 cut(s)	189, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.