Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012443.1

Orthogroup ID

OG0016177

Physical Location & Seq

Genomic Coordinates Forward (+)

25221 .. 25988

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012443.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggaaaatacctgggaatctgaagatcaacacggctactctgccgggtcttccgtcgatcatgaccacaagaagctcaggctattcgggtttgagctcaatccgtacaagaacgtcgacgaaaatttcaaagcctgtgctgaaggagatgagagcgtaaattcgtcgaacacatggaaagcatcaaccagcagcgaagccgagcaactcgacaacaagaagttcgagtgtcaatactgtttcaaggagtttgcaaattcacaagcgcttggtggacatcaaaatgcgcacaagaaggagaggatgaagaagaagaggcttcagctccaagcaagaaaggccagcatcaactattatctccaacctttccagaatttcaatcatcctcatggttctgctgcatcagcttcatggttttacgatccctcctcgtatgttaacaataccgaacagtttacgctccatgaagaatcccaaatcagcttcaacccgtatgatcaaaatggatcgaacgggtcggcccaggtttctaattggtatgctttaactcgaggagctcagtttccttaccagcaagaacaagatgatcattcatctaagttcactttgacacaaacagatagatcaggagaaagcagaccagtgatcttcaataagccttcgtctttacctgcttcgactactcaaagttcatgtaaacctttggatcttcagttagggattggcttgccatcgaagatacaaagatcatctagaagtgaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010468 GO:0010476 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0044212 GO:0048364 GO:0048468 GO:0048469 GO:0048506 GO:0048509 GO:0048510 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

255

Amino Acids

28.89

Weight (kDa)

6.31

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10480
fragaria_vesca	FvH4_4g35130
malus_domestica	MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica	Prupe.1G260700_v2.0.a1
pyrus_communis	pycom16g07380
rosa_laevigata	RLG00000005807
rosa_multiflora	Rmu_sc0012443.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385250
rosa_rugosa	Rorug04G0354900
rosa_samantha	Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana	Rw4G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	117
AclWI	GGATC	3 cut(s)	416, 514, 714
AcsI	RAATTY	4 cut(s)	124, 160, 256, 373
AcuI	CTGAAG	4 cut(s)	42, 162, 305, 695
AfaI	GTAC	1 cut(s)	107
AfeI	AGCGCT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	130, 244, 379, 487, 652
AjnI	CCWGG	2 cut(s)	11, 522
AluBI	AGCT	6 cut(s)	76, 97, 325, 407, 483, 557
AluI	AGCT	6 cut(s)	76, 97, 325, 407, 483, 557
Alw21I	GWGCWC	2 cut(s)	99, 559
AlwI	GGATC	3 cut(s)	416, 514, 714
Ama87I	CYCGRG	1 cut(s)	549
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	2 cut(s)	339, 519
ApeKI	GCWGC	2 cut(s)	192, 398
ApoI	RAATTY	4 cut(s)	124, 160, 256, 373
AspLEI	GCGC	2 cut(s)	268, 289
AspS9I	GGNCC	1 cut(s)	520
AsuC2I	CCSGG	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	99, 559
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	2 cut(s)	99, 559
BbvI	GCAGC	2 cut(s)	204, 385
BccI	CCATC	1 cut(s)	739
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	13, 524
BclI	TGATCA	2 cut(s)	496, 586
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	193, 399
BlsI	GCNGC	2 cut(s)	194, 400
Bme1390I	CCNGG	3 cut(s)	13, 46, 524
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	520
BmrFI	CCNGG	3 cut(s)	13, 46, 524
BmsI	GCATC	3 cut(s)	191, 354, 410
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	12, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bse1I	ACTGG	1 cut(s)	641
BseBI	CCWGG	2 cut(s)	13, 524
BseDI	CCNNGG	2 cut(s)	12, 522
BseGI	GGATG	2 cut(s)	309, 382
BseMII	CTCAG	2 cut(s)	91, 572
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	2 cut(s)	418, 567
BseXI	GCAGC	2 cut(s)	204, 385
BshFI	GGCC	2 cut(s)	341, 521
BsiHKAI	GWGCWC	2 cut(s)	99, 559
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	2 cut(s)	341, 521
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	2 cut(s)	99, 559
BspANI	GGCC	2 cut(s)	341, 521
BspCNI	CTCAG	2 cut(s)	90, 571
BspHI	TCATGA	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	3 cut(s)	416, 514, 714
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	12, 522
Bst2UI	CCWGG	2 cut(s)	13, 524
Bst4CI	ACNGT	2 cut(s)	239, 453
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	343, 728
BstDEI	CTNAG	3 cut(s)	77, 558, 597
BstF5I	GGATG	2 cut(s)	309, 382
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 404
BstNI	CCWGG	2 cut(s)	13, 524
BstSCI	CCNGG	3 cut(s)	11, 44, 522
BstV1I	GCAGC	2 cut(s)	204, 385
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	2 cut(s)	341, 521
BtsCI	GGATG	2 cut(s)	309, 382
BtsIMutI	CAGTG	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	343, 728
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	2 cut(s)	268, 289
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	6 cut(s)	62, 174, 389, 411, 464, 693
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	3 cut(s)	77, 558, 597
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	2 cut(s)	97, 557
Eco24I	GRGCYC	2 cut(s)	99, 559
Eco47III	AGCGCT	1 cut(s)	267
Eco53kI	GAGCTC	2 cut(s)	97, 557
Eco57I	CTGAAG	4 cut(s)	42, 162, 305, 695
Eco88I	CYCGRG	1 cut(s)	549
EcoICRI	GAGCTC	2 cut(s)	97, 557
EcoRII	CCWGG	2 cut(s)	11, 522
EcoT38I	GRGCYC	2 cut(s)	99, 559
FaeI	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
FaiI	YATR	9 cut(s)	63, 175, 390, 412, 435, 465, 495, 540, 694
FatI	CATG	6 cut(s)	61, 173, 388, 410, 463, 692
FbaI	TGATCA	2 cut(s)	496, 586
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	193, 399
FokI	GGATG	2 cut(s)	316, 369
FriOI	GRGCYC	2 cut(s)	99, 559
Fsp4HI	GCNGC	2 cut(s)	193, 399
FspAI	RTGCGCAY	1 cut(s)	288
FspBI	CTAG	1 cut(s)	753
FspI	TGCGCA	1 cut(s)	288
GlaI	GCGC	2 cut(s)	267, 288
GluI	GCNGC	2 cut(s)	193, 399
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	341, 521
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	2 cut(s)	268, 289
Hin1II	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
Hin6I	GCGC	2 cut(s)	266, 287
HinP1I	GCGC	2 cut(s)	266, 287
HincII	GTYRAC	2 cut(s)	118, 439
HindII	GTYRAC	2 cut(s)	118, 439
HinfI	GANTC	2 cut(s)	17, 470
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	6 cut(s)	118, 275, 439, 456, 603, 698
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	4 cut(s)	62, 370, 627, 753
Hpy8I	GTNNAC	6 cut(s)	118, 275, 439, 456, 603, 698
Hpy99I	CGWCG	4 cut(s)	59, 119, 122, 169
HpyAV	CCTTC	3 cut(s)	137, 289, 669
HpyCH4III	ACNGT	2 cut(s)	239, 453
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	254, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 404
HpyF3I	CTNAG	3 cut(s)	77, 558, 597
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
HspAI	GCGC	2 cut(s)	266, 287
Ksp22I	TGATCA	2 cut(s)	496, 586
KspAI	GTTAAC	1 cut(s)	439
LmnI	GCTCC	3 cut(s)	330, 465, 554
Lsp1109I	GCAGC	2 cut(s)	204, 385
LweI	GCATC	3 cut(s)	191, 354, 410
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	1 cut(s)	114
MboII	GAAGA	9 cut(s)	35, 42, 319, 322, 325, 479, 640, 701, 748
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	2 cut(s)	99, 559
MluCI	AATT	5 cut(s)	124, 160, 256, 373, 532
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	6 cut(s)	294, 309, 396, 436, 439, 545
MseI	TTAA	2 cut(s)	438, 545
MslI	CAYNNNNRTG	2 cut(s)	282, 387
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	3 cut(s)	13, 46, 524
MvaI	CCWGG	2 cut(s)	13, 524
MwoI	GCNNNNNNNGC	2 cut(s)	338, 404
NciI	CCSGG	1 cut(s)	46
NlaIII	CATG	6 cut(s)	65, 177, 392, 414, 467, 696
NmeAIII	GCCGAG	1 cut(s)	226
NsbI	TGCGCA	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	549
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	17, 470
PkrI	GCNGC	2 cut(s)	194, 400
Psp124BI	GAGCTC	2 cut(s)	99, 559
Psp6I	CCWGG	2 cut(s)	11, 522
PspGI	CCWGG	2 cut(s)	11, 522
PspPI	GGNCC	1 cut(s)	520
PspXI	VCTCGAGB	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	2 cut(s)	282, 387
SacI	GAGCTC	2 cut(s)	99, 559
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	438, 545
SatI	GCNGC	2 cut(s)	193, 399
Sau96I	GGNCC	1 cut(s)	520
ScrFI	CCNGG	3 cut(s)	13, 46, 524
SduI	GDGCHC	2 cut(s)	99, 559
SfaNI	GCATC	3 cut(s)	191, 354, 410
Sfr274I	CTCGAG	1 cut(s)	549
SgrDI	CGTCGACG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	2 cut(s)	282, 387
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
Sse9I	AATT	5 cut(s)	124, 160, 256, 373, 532
SspMI	CTAG	1 cut(s)	753
SstI	GAGCTC	2 cut(s)	99, 559
StyD4I	CCNGG	3 cut(s)	11, 44, 522
TaaI	ACNGT	2 cut(s)	239, 453
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	9 cut(s)	57, 117, 167, 210, 225, 509, 550, 677, 734
TasI	AATT	5 cut(s)	124, 160, 256, 373, 532
TfiI	GAWTC	2 cut(s)	17, 470
Tru1I	TTAA	2 cut(s)	438, 545
Tru9I	TTAA	2 cut(s)	438, 545
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	2 cut(s)	192, 398
TspDTI	ATGAA	5 cut(s)	320, 399, 480, 582, 681
TspGWI	ACGGA	2 cut(s)	43, 93
TspRI	CASTG	1 cut(s)	648
XapI	RAATTY	4 cut(s)	124, 160, 256, 373
XbaI	TCTAGA	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.