Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016177

Physical Location & Seq

Genomic Coordinates Reverse (-)

32552680 .. 32553444

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAAACACCTGTGAATCTGAAGATCAACATGGCTACTCTGCAGGCTCTTGCGTCGATCATGAGCACAAGAAGCTCAGGCTGTTTGGTTTTGAGCTCAATCCGTACAAGAACGTCGACGAAAATATCAAAGCTGAAGGAGACGAGAGCGTAAACTCGTCAAACACATGGAAAGCATCAACCAGCAGCGAAGCCGAGCAACTTGACAACAAGAAGTTCGAGTGTCAATACTGTTTCAAGGAGTTTGCGAATTCACAAGCGCTTGGTGGACATCAGAATGCGCACAAGAAGGAGAGGATGAAGAAGAAGAGGCTTCAGCTCCAAGCAAGAAAGGCCAGTATCAACTATTACCTTCAACCTTTCCAGACTTTGAATCATCCTCATGGTTCTGCTGCATCAGCTTCATGGTTCTATGATCCCTCCTCGTATGTTAACAATACCGAACACTTTACGCTCCATGAAGAATCCCAAATCAGCTTCAACCCGTACGATCAAAATGGATCGAACGAGTCTGCTGCCCAGGTTTCTAATTGGTATGCTTTCCCTGGAGCAGCTCAGTTTCCTTACCAAGAACTAGATGATCAATCATCTAGGTTCACTTTGACACAAACAGATAGATCAGGAGAAAGTAGACCTGTGATCTTCACTAAGCCTAATTCGGCTTTACCTGCTTCGACTACTCAAAGTTCATGTAAACCTTTGGATCTTCAGTTAAAGCTTGGCTTGCCATCGAAGATACGAAGATCATCTAGAAGTGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010026 GO:0010033 GO:0010053 GO:0010054 GO:0010468 GO:0010476 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0040034 GO:0042221 GO:0044212 GO:0048364 GO:0048468 GO:0048469 GO:0048506 GO:0048509 GO:0048510 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

255

Amino Acids

28.74

Weight (kDa)

6.31

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10480
fragaria_vesca	FvH4_4g35130
malus_domestica	MD13G1086000.v1.1 MD16G1085400.v1.1
prunus_persica	Prupe.1G260700_v2.0.a1
pyrus_communis	pycom16g07380
rosa_laevigata	RLG00000005807
rosa_multiflora	Rmu_sc0012443.1_g000007
rosa_roxburghii	Rroxscaffold_5G00385250
rosa_rugosa	Rorug04G0354900
rosa_samantha	Rh4AG415600 Rh4BG426900 Rh4CG441700 Rh4DG422900
rosa_wichuraiana	Rw4G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	676
AccI	GTMKAC	2 cut(s)	117, 631
AclWI	GGATC	3 cut(s)	410, 508, 711
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	4 cut(s)	42, 156, 299, 692
AfaI	GTAC	2 cut(s)	107, 488
AfeI	AGCGCT	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	238, 356, 373, 481
AjnI	CCWGG	2 cut(s)	519, 544
AluBI	AGCT	8 cut(s)	76, 97, 134, 319, 401, 477, 554, 718
AluI	AGCT	8 cut(s)	76, 97, 134, 319, 401, 477, 554, 718
Alw21I	GWGCWC	2 cut(s)	69, 99
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	410, 508, 711
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	186, 392, 515, 551
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	2 cut(s)	262, 283
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	69, 99
BbvI	GCAGC	4 cut(s)	198, 379, 502, 563
BccI	CCATC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	2 cut(s)	521, 546
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	3 cut(s)	575, 591, 750
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	4 cut(s)	187, 393, 516, 552
BlsI	GCNGC	4 cut(s)	188, 394, 517, 553
Bme1390I	CCNGG	2 cut(s)	521, 546
BmrFI	CCNGG	2 cut(s)	521, 546
BmsI	GCATC	2 cut(s)	185, 404
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	519, 544
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	521, 546
BseDI	CCNNGG	2 cut(s)	519, 544
BseGI	GGATG	2 cut(s)	303, 376
BseMII	CTCAG	2 cut(s)	91, 569
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	4 cut(s)	198, 379, 502, 563
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	69, 99
BsiWI	CGTACG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	69, 99
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	90, 568
BspHI	TCATGA	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	3 cut(s)	410, 508, 711
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	519, 544
Bst2UI	CCWGG	2 cut(s)	521, 546
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	46, 725
BstDEI	CTNAG	3 cut(s)	77, 555, 648
BstF5I	GGATG	2 cut(s)	303, 376
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	262, 283
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 332, 398, 668, 724
BstNI	CCWGG	2 cut(s)	521, 546
BstSCI	CCNGG	2 cut(s)	519, 544
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	198, 379, 502, 563
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	303, 376
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	46, 725
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	2 cut(s)	262, 283
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	106, 487
CviAII	CATG	7 cut(s)	32, 62, 168, 383, 405, 458, 690
CviQI	GTAC	2 cut(s)	106, 487
DdeI	CTNAG	3 cut(s)	77, 555, 648
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	99
Eco47III	AGCGCT	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	4 cut(s)	42, 156, 299, 692
EcoICRI	GAGCTC	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	519, 544
EcoT38I	GRGCYC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	7 cut(s)	35, 65, 171, 386, 408, 461, 693
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FatI	CATG	7 cut(s)	31, 61, 167, 382, 404, 457, 689
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	2 cut(s)	117, 631
Fnu4HI	GCNGC	4 cut(s)	187, 393, 516, 552
FokI	GGATG	2 cut(s)	310, 363
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	4 cut(s)	187, 393, 516, 552
FspAI	RTGCGCAY	1 cut(s)	282
FspBI	CTAG	3 cut(s)	575, 591, 750
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	2 cut(s)	261, 282
GluI	GCNGC	4 cut(s)	187, 393, 516, 552
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	335
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	2 cut(s)	262, 283
Hin1II	CATG	7 cut(s)	35, 65, 171, 386, 408, 461, 693
Hin6I	GCGC	2 cut(s)	260, 281
HinP1I	GCGC	2 cut(s)	260, 281
HincII	GTYRAC	2 cut(s)	118, 433
HindII	GTYRAC	2 cut(s)	118, 433
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	4 cut(s)	17, 373, 464, 509
HpaI	GTTAAC	1 cut(s)	433
Hpy166II	GTNNAC	7 cut(s)	118, 154, 269, 433, 597, 632, 695
Hpy188I	TCNGA	2 cut(s)	22, 276
Hpy188III	TCNNGA	4 cut(s)	62, 364, 621, 750
Hpy8I	GTNNAC	7 cut(s)	118, 154, 269, 433, 597, 632, 695
Hpy99I	CGWCG	3 cut(s)	59, 119, 122
HpyAV	CCTTC	3 cut(s)	131, 283, 362
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	44, 395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 332, 398, 668, 724
HpyF3I	CTNAG	3 cut(s)	77, 555, 648
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	7 cut(s)	35, 65, 171, 386, 408, 461, 693
HspAI	GCGC	2 cut(s)	260, 281
Ksp22I	TGATCA	1 cut(s)	580
KspAI	GTTAAC	1 cut(s)	433
LmnI	GCTCC	3 cut(s)	324, 459, 548
Lsp1109I	GCAGC	4 cut(s)	198, 379, 502, 563
LweI	GCATC	2 cut(s)	185, 404
MaeI	CTAG	3 cut(s)	575, 591, 750
MaeII	ACGT	1 cut(s)	114
MboII	GAAGA	9 cut(s)	35, 313, 316, 319, 473, 634, 698, 745, 753
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	69, 99
MluCI	AATT	3 cut(s)	250, 529, 655
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	288, 303, 390, 430, 433
MseI	TTAA	2 cut(s)	432, 713
MslI	CAYNNNNRTG	2 cut(s)	276, 381
MspR9I	CCNGG	2 cut(s)	521, 546
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	2 cut(s)	521, 546
MwoI	GCNNNNNNNGC	5 cut(s)	73, 332, 398, 668, 724
NlaIII	CATG	7 cut(s)	35, 65, 171, 386, 408, 461, 693
NmeAIII	GCCGAG	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	282
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	17, 373, 464
Pfl23II	CGTACG	1 cut(s)	486
PkrI	GCNGC	4 cut(s)	188, 394, 517, 553
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	519, 544
PspGI	CCWGG	2 cut(s)	519, 544
PspLI	CGTACG	1 cut(s)	486
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	2 cut(s)	107, 488
RsaNI	GTAC	2 cut(s)	106, 487
RseI	CAYNNNNRTG	2 cut(s)	276, 381
SacI	GAGCTC	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	432, 713
SatI	GCNGC	4 cut(s)	187, 393, 516, 552
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	521, 546
SduI	GDGCHC	2 cut(s)	69, 99
SfaNI	GCATC	2 cut(s)	185, 404
SfcI	CTRYAG	1 cut(s)	42
SgrDI	CGTCGACG	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	276, 381
Sse9I	AATT	3 cut(s)	250, 529, 655
SspMI	CTAG	3 cut(s)	575, 591, 750
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	519, 544
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	6 cut(s)	57, 117, 219, 503, 674, 731
TasI	AATT	3 cut(s)	250, 529, 655
TfiI	GAWTC	3 cut(s)	17, 373, 464
Tru1I	TTAA	2 cut(s)	432, 713
Tru9I	TTAA	2 cut(s)	432, 713
TseI	GCWGC	4 cut(s)	186, 392, 515, 551
TspDTI	ATGAA	4 cut(s)	314, 393, 474, 678
TspGWI	ACGGA	1 cut(s)	93
XapI	RAATTY	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	749
XmiI	GTMKAC	2 cut(s)	117, 631
XspI	CTAG	3 cut(s)	575, 591, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.