Rorug04G0354900

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013490
Physical Location & Seq
Forward (+)
52694130 .. 52695713
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0354900.1

Sequence Viewer

Length: 939 bp
ATGAGGAAAGGCTCAACATCAATTGCATCAACCGTTCTTTTTCCTGTCCTAGTTTTTCTACTCTTCCTTGTTCAAGTTCAAGCAAGAAACTTGAATGAAGCTGATTGTTCTTCTTCCTGTGGAGATATCCACAACATCAAGTACCCTTTCCGCCTTAAAGGCGATCCATCCGGCTGCGGTGACCGCGACTTTGAATTCTCATGTGTCAACAACAAAACCATCCTCGAAATATTTCCGGGTAAATACTACGTCAAAAACATTTCATACACTGACAATCTACTCCGTTTAGTTGATGTCAACTTCGCAAACGGAAGCTGCAGCCTCCCATCTGGTTCTATAGAAAATTCAGATGGTTTCGTCCAAGACATTCGTTACAAGGGTCATGTCAACTACACAACTGGATCTCGTATCCGATTTGTCAAGTGCTCAAGAAATGTCACCCTGCAGAATAATGAGAAGTATTACTATAACTACACGGAGGTTCCTTGTTTGACAAGAAATGGAACTTACACGTATGCTGTTCTAGATGGAATGTACACGGCTATGGATTATCCACCGACGTGCTCACTTGTTTCGCTGGCTCCTGTGGATTATCATGAAGATGTTTATAAGTCCCCTACTTATGAAGCCATAGTGAAAGTGTTGCAGGCAGGGTTTGATCTCGGTTGGTCTGTTGAGTGCAGGGATTGCTCTTTGGCTGGTAAGCATTGCGTAATCGATGACAAAGCATGGGACACTAGGCCTATCATATTCCAATGTGCAAAAGATTACAAAGAACTCACACAGTTTGAAGCAAGATTGATCATTGCGGGAATCTGTGTGGCAGGTGTAATTGGTCTATTGCTTATAGTTGCTGTATTGGTGTTTGTTATCCGCAAATATAAGAAACGAAACAAGCCCGTGAAGAATCTACAGAACCAGCAATCATCGACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

312

Amino Acids

35.1

Weight (kDa)

8.47

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 36 - 98 8.1e-19 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24120
fragaria_vesca FvH4_4g35120
malus_domestica MD13G1086100.v1.1 MD16G1085500.v1.1
prunus_persica Prupe.1G260600_v2.0.a1 Prupe.1G260600_v2.0.a1
pyrus_communis pycom16g07390
rosa_chinensis RchiOBHm_Chr4g0444721
rosa_laevigata RLG00000005809
rosa_multiflora Rmu_sc0012443.1_g000009
rosa_roxburghii Rroxscaffold_5G00385230
rosa_rugosa Rorug04G0354700 Rorug04G0354800 Rorug04G0354900
rosa_samantha Rh4BG426600 Rh4CG441400 Rh4DG422400
rosa_wichuraiana Rw4G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 609
AarI CACCTGC 1 cut(s) 815
Acc36I ACCTGC 1 cut(s) 815
AccII CGCG 1 cut(s) 186
AciI CCGC 5 cut(s) 151, 177, 184, 809, 874
AclWI GGATC 2 cut(s) 158, 409
AcsI RAATTY 2 cut(s) 194, 343
AfaI GTAC 2 cut(s) 143, 536
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 5 cut(s) 74, 80, 94, 194, 791
AjiI CACGTC 1 cut(s) 561
AleI CACNNNNGTG 1 cut(s) 559
AluBI AGCT 2 cut(s) 101, 315
AluI AGCT 2 cut(s) 101, 315
Alw21I GWGCWC 2 cut(s) 428, 566
AlwI GGATC 2 cut(s) 158, 409
AoxI GGCC 1 cut(s) 740
ApeKI GCWGC 3 cut(s) 174, 315, 318
ApoI RAATTY 2 cut(s) 194, 343
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
Asp700I GAANNNNTTC 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 191, 430
Bbv12I GWGCWC 2 cut(s) 428, 566
BbvI GCAGC 3 cut(s) 161, 302, 330
BccI CCATC 5 cut(s) 175, 227, 334, 344, 521
BceAI ACGGC 1 cut(s) 555
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 801
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 3 cut(s) 50, 524, 738
BfmI CTRYAG 4 cut(s) 316, 336, 443, 911
BfuAI ACCTGC 1 cut(s) 815
BfuI GTATCC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 3 cut(s) 175, 316, 319
BlsI GCNGC 3 cut(s) 176, 317, 320
Bme1390I CCNGG 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 483, 582
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 412
BpuMI CCSGG 1 cut(s) 237
Bsa29I ATCGAT 1 cut(s) 717
BsaAI YACGTR 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 2 cut(s) 706, 804
BseCI ATCGAT 1 cut(s) 717
BseGI GGATG 2 cut(s) 167, 219
BseMI GCAATG 2 cut(s) 706, 804
BseNI ACTGG 1 cut(s) 403
BseXI GCAGC 3 cut(s) 161, 302, 330
BsgI GTGCAG 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 742
BshVI ATCGAT 1 cut(s) 717
BsiHKAI GWGCWC 2 cut(s) 428, 566
BsiSI CCGG 2 cut(s) 171, 236
BslFI GGGAC 2 cut(s) 598, 746
BsmFI GGGAC 2 cut(s) 598, 746
BsnI GGCC 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 428, 566
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 4 cut(s) 163, 401, 658, 801
BspACI CCGC 5 cut(s) 151, 177, 184, 809, 874
BspANI GGCC 1 cut(s) 742
BspDI ATCGAT 1 cut(s) 717
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 483, 582
BspMAI CTGCAG 2 cut(s) 320, 447
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 2 cut(s) 158, 409
BsrDI GCAATG 2 cut(s) 706, 804
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 1 cut(s) 403
BssMI GATC 4 cut(s) 163, 401, 658, 801
Bst4CI ACNGT 2 cut(s) 34, 786
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 687
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 513
BstC8I GCNNGC 2 cut(s) 579, 648
BstEII GGTNACC 1 cut(s) 179
BstF5I GGATG 2 cut(s) 167, 219
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 4 cut(s) 166, 404, 661, 804
BstMBI GATC 4 cut(s) 163, 401, 658, 801
BstMWI GCNNNNNNNGC 3 cut(s) 159, 183, 687
BstPI GGTNACC 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 235
BstSFI CTRYAG 4 cut(s) 316, 336, 443, 911
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 161, 302, 330
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
Bsu15I ATCGAT 1 cut(s) 717
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 742
BsuTUI ATCGAT 1 cut(s) 717
BtrI CACGTC 1 cut(s) 561
BtsCI GGATG 2 cut(s) 167, 219
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 2 cut(s) 579, 648
CciI TCATGA 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 717
Csp6I GTAC 2 cut(s) 142, 535
CviAII CATG 4 cut(s) 201, 383, 596, 729
CviQI GTAC 2 cut(s) 142, 535
DpnI GATC 4 cut(s) 165, 403, 660, 803
DpnII GATC 4 cut(s) 163, 401, 658, 801
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 742
Eco32I GATATC 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 127
FaeI CATG 4 cut(s) 204, 386, 599, 732
FaqI GGGAC 2 cut(s) 598, 746
FatI CATG 4 cut(s) 200, 382, 595, 728
FauI CCCGC 1 cut(s) 802
FbaI TGATCA 1 cut(s) 801
Fnu4HI GCNGC 3 cut(s) 175, 316, 319
FokI GGATG 2 cut(s) 154, 206
Fsp4HI GCNGC 3 cut(s) 175, 316, 319
FspBI CTAG 3 cut(s) 50, 524, 738
GluI GCNGC 3 cut(s) 175, 316, 319
HaeIII GGCC 1 cut(s) 742
HapII CCGG 2 cut(s) 171, 236
Hin1II CATG 4 cut(s) 204, 386, 599, 732
HincII GTYRAC 3 cut(s) 208, 298, 388
HindII GTYRAC 3 cut(s) 208, 298, 388
HinfI GANTC 2 cut(s) 813, 907
HpaII CCGG 2 cut(s) 171, 236
HphI GGTGA 2 cut(s) 191, 430
Hpy166II GTNNAC 4 cut(s) 208, 298, 388, 537
Hpy188I TCNGA 2 cut(s) 349, 413
Hpy188III TCNNGA 3 cut(s) 429, 524, 596
Hpy8I GTNNAC 4 cut(s) 208, 298, 388, 537
Hpy99I CGWCG 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 34, 786
HpyCH4IV ACGT 3 cut(s) 249, 512, 560
HpyCH4V TGCA 6 cut(s) 26, 318, 445, 646, 681, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 183, 687
HpySE526I ACGT 3 cut(s) 249, 512, 560
Hsp92II CATG 4 cut(s) 204, 386, 599, 732
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 4 cut(s) 163, 401, 658, 801
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 3 cut(s) 161, 302, 330
LweI GCATC 1 cut(s) 35
MaeI CTAG 3 cut(s) 50, 524, 738
MaeII ACGT 3 cut(s) 249, 512, 560
MaeIII GTNAC 3 cut(s) 179, 371, 436
MalI GATC 4 cut(s) 165, 403, 660, 803
MboI GATC 4 cut(s) 163, 401, 658, 801
MboII GAAGA 5 cut(s) 55, 102, 105, 611, 916
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 428, 566
MluCI AATT 4 cut(s) 21, 194, 343, 831
MnlI CCTC 3 cut(s) 233, 332, 472
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 3 cut(s) 542, 559, 600
MspI CCGG 2 cut(s) 171, 236
MspR9I CCNGG 1 cut(s) 237
MunI CAATTG 1 cut(s) 21
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 159, 183, 687
NciI CCSGG 1 cut(s) 237
NdeII GATC 4 cut(s) 163, 401, 658, 801
NlaIII CATG 4 cut(s) 204, 386, 599, 732
NlaIV GGNNCC 2 cut(s) 483, 582
NmuCI GTSAC 2 cut(s) 179, 436
OliI CACNNNNGTG 1 cut(s) 559
PagI TCATGA 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 815
PceI AGGCCT 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 813, 907
PkrI GCNGC 3 cut(s) 176, 317, 320
Ppu21I YACGTR 1 cut(s) 513
PsiI TTATAA 1 cut(s) 609
PspEI GGTNACC 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 483, 582
PstI CTGCAG 2 cut(s) 320, 447
PsuI RGATCY 1 cut(s) 401
RsaI GTAC 2 cut(s) 143, 536
RsaNI GTAC 2 cut(s) 142, 535
RseI CAYNNNNRTG 3 cut(s) 542, 559, 600
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 175, 316, 319
Sau3AI GATC 4 cut(s) 163, 401, 658, 801
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 2 cut(s) 428, 566
SetI ASST 7 cut(s) 103, 252, 317, 483, 515, 563, 829
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 4 cut(s) 316, 336, 443, 911
SmiMI CAYNNNNRTG 3 cut(s) 542, 559, 600
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 4 cut(s) 21, 194, 343, 831
SseBI AGGCCT 1 cut(s) 742
SsiI CCGC 5 cut(s) 151, 177, 184, 809, 874
SspI AATATT 1 cut(s) 231
SspMI CTAG 3 cut(s) 50, 524, 738
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 34, 786
TaiI ACGT 3 cut(s) 252, 515, 563
TaqI TCGA 3 cut(s) 225, 717, 929
TasI AATT 4 cut(s) 21, 194, 343, 831
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 2 cut(s) 813, 907
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 179, 436
TseI GCWGC 3 cut(s) 174, 315, 318
Tsp45I GTSAC 2 cut(s) 179, 436
TspDTI ATGAA 4 cut(s) 111, 252, 612, 639
TspGWI ACGGA 3 cut(s) 272, 324, 491
TspRI CASTG 1 cut(s) 274
XapI RAATTY 2 cut(s) 194, 343
XbaI TCTAGA 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 3 cut(s) 50, 524, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.