Rorug04G0354800

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013490
Physical Location & Seq
Forward (+)
52682799 .. 52684382
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0354800.1

Sequence Viewer

Length: 603 bp
ATGTTGCTGATCGGGGGAGAAGAACCAGAATGGGAGCTGCAATTGCTTAATTGGGGTCTAGCTCGCGGAGAAGGAAAGAAGGCTTCTTGTGATGAACATATTATCCGTTTGGTTGATGTCAACTTTGCCAATGGAAGCAGCTGCAGCCTTCCATCGGGATCTGTTGTATCGAGGGATGGATATGTCAATGATTTTCGCTTCTTGGCACTTGGCACAAATCAAACTTACACACAGTTTGTGAAGTGCTCCAGAAACATCAGCCAGGCTAATGTAGCTGCTTATAACTACACGGCAGTTGCATGTTTAACTAGAGTTAATGGGACTAATTACTTCTATGCTGTTTATGATGGCTACTACTTAGCTCGTCCTCATCAACCACCATGCTCGCTTATTTCAGTGGCTATTTCAGATTATCATGAAAATTTTGTTGAGCCCTTATCTTATGAAGCCATCATGAAGCAATTGGAGGCAGGGTTTGATCTGGGATGTGCTTTTAGTGGTTTTATTGGTGTTTCGCATCCGCAGATGTATGAGACGACATCAGCGGGAGAAGAATCAGCACCAATCATCGACGCCAGCATTAATCAGCAGTTCTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

200

Amino Acids

22.03

Weight (kDa)

4.7

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24120
fragaria_vesca FvH4_4g35120
malus_domestica MD13G1086100.v1.1 MD16G1085500.v1.1
prunus_persica Prupe.1G260600_v2.0.a1 Prupe.1G260600_v2.0.a1
pyrus_communis pycom16g07390
rosa_chinensis RchiOBHm_Chr4g0444721
rosa_laevigata RLG00000005809
rosa_multiflora Rmu_sc0012443.1_g000009
rosa_roxburghii Rroxscaffold_5G00385230
rosa_rugosa Rorug04G0354700 Rorug04G0354800 Rorug04G0354900
rosa_samantha Rh4BG426600 Rh4CG441400 Rh4DG422400
rosa_wichuraiana Rw4G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AccII CGCG 1 cut(s) 66
AciI CCGC 3 cut(s) 66, 521, 545
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 598
AjnI CCWGG 1 cut(s) 261
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 5 cut(s) 37, 62, 141, 275, 362
AluI AGCT 5 cut(s) 37, 62, 141, 275, 362
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 5 cut(s) 37, 138, 141, 144, 275
ApoI RAATTY 1 cut(s) 421
AseI ATTAAT 1 cut(s) 582
BanII GRGCYC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 5 cut(s) 24, 128, 150, 156, 262
BccI CCATC 4 cut(s) 160, 170, 341, 458
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 2 cut(s) 59, 309
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 5 cut(s) 38, 139, 142, 145, 276
BlsI GCNGC 5 cut(s) 39, 140, 143, 146, 277
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 3 cut(s) 181, 491, 517
BseLI CCNNNNNNNGG 1 cut(s) 154
BseXI GCAGC 5 cut(s) 24, 128, 150, 156, 262
Bsh1236I CGCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 248
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 527
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 248, 435
Bsp143I GATC 3 cut(s) 9, 158, 478
BspACI CCGC 3 cut(s) 66, 521, 545
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 2 cut(s) 415, 453
BspMAI CTGCAG 1 cut(s) 146
BspPI GGATC 1 cut(s) 166
BssMI GATC 3 cut(s) 9, 158, 478
BssNI GRCGYC 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 573
BstC8I GCNNGC 3 cut(s) 64, 386, 577
BstDEI CTNAG 1 cut(s) 358
BstF5I GGATG 3 cut(s) 181, 491, 517
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 3 cut(s) 12, 161, 481
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 3 cut(s) 9, 158, 478
BstMWI GCNNNNNNNGC 3 cut(s) 43, 144, 272
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 5 cut(s) 24, 128, 150, 156, 262
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 3 cut(s) 181, 491, 517
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 3 cut(s) 64, 386, 577
CciI TCATGA 2 cut(s) 415, 453
CseI GACGC 1 cut(s) 581
CviAII CATG 4 cut(s) 300, 381, 416, 454
DdeI CTNAG 1 cut(s) 358
DpnI GATC 3 cut(s) 11, 160, 480
DpnII GATC 3 cut(s) 9, 158, 478
Eco24I GRGCYC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 4 cut(s) 303, 384, 419, 457
FaqI GGGAC 1 cut(s) 334
FatI CATG 4 cut(s) 299, 380, 415, 453
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 5 cut(s) 38, 139, 142, 145, 276
FokI GGATG 3 cut(s) 188, 498, 504
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 5 cut(s) 38, 139, 142, 145, 276
FspBI CTAG 2 cut(s) 59, 309
GluI GCNGC 5 cut(s) 38, 139, 142, 145, 276
GsuI CTGGAG 1 cut(s) 232
HgaI GACGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 4 cut(s) 303, 384, 419, 457
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 5 cut(s) 156, 249, 416, 454, 595
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 65, 73, 158
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 40, 144, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 144, 272
HpyF3I CTNAG 1 cut(s) 358
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 4 cut(s) 303, 384, 419, 457
Kzo9I GATC 3 cut(s) 9, 158, 478
LmnI GCTCC 2 cut(s) 34, 251
LpnPI CCDG 7 cut(s) 39, 248, 262, 275, 456, 467, 589
Lsp1109I GCAGC 5 cut(s) 24, 128, 150, 156, 262
LweI GCATC 1 cut(s) 526
MaeI CTAG 2 cut(s) 59, 309
MalI GATC 3 cut(s) 11, 160, 480
MboI GATC 3 cut(s) 9, 158, 478
MboII GAAGA 2 cut(s) 32, 563
MfeI CAATTG 2 cut(s) 41, 461
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 2 cut(s) 248, 435
MluCI AATT 5 cut(s) 41, 49, 325, 421, 461
MnlI CCTC 3 cut(s) 165, 378, 460
MseI TTAA 4 cut(s) 48, 305, 315, 582
MspA1I CMGCKG 2 cut(s) 141, 545
MspR9I CCNGG 1 cut(s) 263
MunI CAATTG 2 cut(s) 41, 461
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 43, 144, 272
NdeII GATC 3 cut(s) 9, 158, 478
NlaIII CATG 4 cut(s) 303, 384, 419, 457
NspI RCATGY 1 cut(s) 303
PagI TCATGA 2 cut(s) 415, 453
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 5 cut(s) 39, 140, 143, 146, 277
PshBI ATTAAT 1 cut(s) 582
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PstI CTGCAG 1 cut(s) 146
PsuI RGATCY 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 141
SaqAI TTAA 4 cut(s) 48, 305, 315, 582
SatI GCNGC 5 cut(s) 38, 139, 142, 145, 276
Sau3AI GATC 3 cut(s) 9, 158, 478
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 248, 435
SetI ASST 5 cut(s) 39, 64, 143, 277, 364
SfaNI GCATC 1 cut(s) 526
SfcI CTRYAG 1 cut(s) 142
Sse9I AATT 5 cut(s) 41, 49, 325, 421, 461
SsiI CCGC 3 cut(s) 66, 521, 545
SspMI CTAG 2 cut(s) 59, 309
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 2 cut(s) 170, 570
TasI AATT 5 cut(s) 41, 49, 325, 421, 461
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 4 cut(s) 48, 305, 315, 582
Tru9I TTAA 4 cut(s) 48, 305, 315, 582
TscAI CASTG 1 cut(s) 402
TseI GCWGC 5 cut(s) 37, 138, 141, 144, 275
TspDTI ATGAA 4 cut(s) 108, 432, 459, 470
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 402
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 1 cut(s) 421
XceI RCATGY 1 cut(s) 303
XspI CTAG 2 cut(s) 59, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.