Rorug04G0354700

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013490
Physical Location & Seq
Forward (+)
52678092 .. 52678451
360 bp
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UTR
Exon/CDS
Intron
Rorug04G0354700.1

Sequence Viewer

Length: 360 bp
ATGAAGAGTCTGAGGAAAGAAGAATCAGCAGCTGCATCCATTCTCCTCTATTCTATGCTGACTTCTCTATTTTTCCTTGCAGTTCAAGCAAGAAGTCATAAACCAGCGTGTGCTTCTTCGTGTGGAGATATCGAAAACATCAGCTACCCTTTTTGCCTAAAGGTTGATCCAGTAGGCTGCGGTGACCCTGACTATGAACTATCATGTGTGAACAACAAAACCATCCTCGAAATATTTCCAGGCAAATACTATGTCAAGAACATTTCTTATGACACTATGCCAAAAAATGCTTCAGACGACAGATCATATCTGTCGTCTGATGAAGTAAAAATCTGTTGTCTAAGTGGCTGCCGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

5.76

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 37 - 92 6e-17 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24120
fragaria_vesca FvH4_4g35120
malus_domestica MD13G1086100.v1.1 MD16G1085500.v1.1
prunus_persica Prupe.1G260600_v2.0.a1 Prupe.1G260600_v2.0.a1
pyrus_communis pycom16g07390
rosa_chinensis RchiOBHm_Chr4g0444721
rosa_laevigata RLG00000005809
rosa_multiflora Rmu_sc0012443.1_g000009
rosa_roxburghii Rroxscaffold_5G00385230
rosa_rugosa Rorug04G0354700 Rorug04G0354800 Rorug04G0354900
rosa_samantha Rh4BG426600 Rh4CG441400 Rh4DG422400
rosa_wichuraiana Rw4G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AluBI AGCT 2 cut(s) 32, 144
AluI AGCT 2 cut(s) 32, 144
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 32
ApeKI GCWGC 4 cut(s) 29, 32, 177, 348
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 194
BbvI GCAGC 4 cut(s) 19, 41, 164, 335
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 240
BisI GCNGC 4 cut(s) 30, 33, 178, 349
BlsI GCNGC 4 cut(s) 31, 34, 179, 350
Bme1390I CCNGG 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 35, 222
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 4 cut(s) 19, 41, 164, 335
Bsp143I GATC 2 cut(s) 166, 302
BspACI CCGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 166, 302
Bst2UI CCWGG 1 cut(s) 240
BstDEI CTNAG 2 cut(s) 11, 341
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 2 cut(s) 35, 222
BstKTI GATC 2 cut(s) 169, 305
BstMBI GATC 2 cut(s) 166, 302
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 4 cut(s) 19, 41, 164, 335
BtsCI GGATG 2 cut(s) 35, 222
CaiI CAGNNNCTG 1 cut(s) 32
CviAII CATG 1 cut(s) 204
CviJI RGCY 4 cut(s) 32, 144, 177, 348
CviKI_1 RGCY 4 cut(s) 32, 144, 177, 348
DdeI CTNAG 2 cut(s) 11, 341
DpnI GATC 2 cut(s) 168, 304
DpnII GATC 2 cut(s) 166, 302
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 238
EcoRV GATATC 1 cut(s) 130
FaeI CATG 1 cut(s) 207
FaiI YATR 8 cut(s) 56, 99, 195, 205, 252, 270, 278, 307
FatI CATG 1 cut(s) 203
Fnu4HI GCNGC 4 cut(s) 30, 33, 178, 349
FokI GGATG 2 cut(s) 22, 209
Fsp4HI GCNGC 4 cut(s) 30, 33, 178, 349
GluI GCNGC 4 cut(s) 30, 33, 178, 349
Hin1II CATG 1 cut(s) 207
HinfI GANTC 2 cut(s) 7, 23
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 12, 295, 319
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 35, 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 11, 341
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 2 cut(s) 166, 302
LpnPI CCDG 5 cut(s) 117, 183, 201, 225, 252
Lsp1109I GCAGC 4 cut(s) 19, 41, 164, 335
LweI GCATC 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 168, 304
MboI GATC 2 cut(s) 166, 302
MboII GAAGA 3 cut(s) 16, 32, 108
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 3 cut(s) 6, 56, 236
MroXI GAANNNNTTC 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 2 cut(s) 166, 302
NlaIII CATG 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 4 cut(s) 31, 34, 179, 350
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 238
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 32
SatI GCNGC 4 cut(s) 30, 33, 178, 349
Sau3AI GATC 2 cut(s) 166, 302
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 240
SetI ASST 3 cut(s) 34, 146, 165
SfaNI GCATC 1 cut(s) 44
SsiI CCGC 1 cut(s) 180
SspI AATATT 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 238
TaqI TCGA 2 cut(s) 132, 228
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 4 cut(s) 29, 32, 177, 348
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 17, 210, 336
XmnI GAANNNNTTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.