MD16G1085500.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013490
Physical Location & Seq
Forward (+)
5985634 .. 5990043
4410 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1085500.v1.1.491

Sequence Viewer

Length: 1392 bp
ATGCCTGGCAGCCGATCGAAATCGGAGAAACAGGAAGCTGAGAAGCAGCTCCGGCGAGACGCTTATGAGGTCCTCGGCGTCAGTAGGAACTCCACGGACCAGGAAATCAAAAGTGCTTACCGGAAACTGGCTCTCAAGTACCATCCGGACAAAAATGCTAATGACCCTAAAGCAGCTGATATGTTCAAGGAGGTTACGGTTTCTTATAATATATTGTCTGATCCAGACAAACGACGTCAGTATGACACAGCCGGCTTTCAGGCTGTTGAAACAGAAAGCCACGACTTGGAGCTAGATCTTTCAAGTTTGGGTGCTGTAAATACCATGTTTGCTGCCCTTTTCAGTAAACTTGGAGTGCCGATAAAGACCACCGTATCAGCTACTGTCTTGGAGGAGGCACTACATGGGATGGTCACTATCCTTCCACTTCCATTGGGGCAGTCTATAACGAAAAAGGTTGAAAAGCAATGTGCTCACTTCTATTCTGTTACAATAACGGAAGCGGAAGCAAAAGCTGGATTTGTGTGCCAAGTGCAATCGTCTGACAAAAGCAAGTTCAAGCTATTGTATTTTGATCAGGAGGAGACTGGTGGATTGAGCCTTTGCCTACAGGAGGACAGTGCAAAAACTGGAAAGGTTACATCTGCTGGGATGTATTTTCTTGGTTTCCCTGTATATCGGTTGGACCCAACATCGAACTCGATGGCTAGTGCAAAGGATCCTGATGCTGCATTCTTTAAAAAGCTGGATGGGTTTCAGCCATGTGAATTAACCGAACTGAAAGCAGGCACCCATGTGTTTGCTGTTTATGGTGACAATTTTTTCAAAAGTGCAAGCTACACGATAGAAGTTCTTTCTTGTGGACCTTTTGCAGAAGAAAAGGAAAGTTTAAGGGCAGTGGAAGCTCAAATACTATCAAAAAGAGTGGAGTTATCGAAATTTGAAACTGAGTACAAAGAGGTTCTGGCACAATTCACGGAGATGACCTCCAGATACACACAAGAAATGCAAGAGATTGACGAGCTTCTCAAGCAGAGGAATAAAATTCATGCCTCGTATACTATTGCTCCTCCAATGAAGCGTAGTTCAAGTAGGAGTAGAAATAAGGGTCAGCCTAAGAAGGAGGTCAAAGAGGATGGTCAAGTGAGAGATAAGAAACCTTCGTTTAGAGATAGATCTAAGAAGAAAAAATGGTTCAACCTTCGCTTAAAGGAAGTCAATCAGGCACTCTCTTTCCAGTTTTTGGTTCCGGTGGTTTTGGCATCCATTGAAGCAAAGTACAAGTTGACCAGAATCACGTTCAACAACTGCATAAGCGGATATGATTTGGCTCCATTAAATCAATCAGCCTGTTCTTTTTGCATCGGCATTGTCATCAAATCACACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

464

Amino Acids

52.0

Weight (kDa)

8.81

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 20 - 82 2.3e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24120
fragaria_vesca FvH4_4g35120
malus_domestica MD13G1086100.v1.1 MD16G1085500.v1.1
prunus_persica Prupe.1G260600_v2.0.a1 Prupe.1G260600_v2.0.a1
pyrus_communis pycom16g07390
rosa_chinensis RchiOBHm_Chr4g0444721
rosa_laevigata RLG00000005809
rosa_multiflora Rmu_sc0012443.1_g000009
rosa_roxburghii Rroxscaffold_5G00385230
rosa_rugosa Rorug04G0354700 Rorug04G0354800 Rorug04G0354900
rosa_samantha Rh4BG426600 Rh4CG441400 Rh4DG422400
rosa_wichuraiana Rw4G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AatII GACGTC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 788
AccB7I CCANNNNNTGG 2 cut(s) 286, 1243
AccI GTMKAC 1 cut(s) 1058
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 2 cut(s) 503, 1317
AclWI GGATC 3 cut(s) 215, 713, 726
AcsI RAATTY 2 cut(s) 938, 1044
AcyI GRCGYC 2 cut(s) 78, 235
AfaI GTAC 3 cut(s) 140, 953, 1280
AfiI CCNNNNNNNGG 4 cut(s) 127, 286, 613, 1243
AflIII ACRYGT 1 cut(s) 1386
AjnI CCWGG 2 cut(s) 4, 99
AleI CACNNNNGTG 1 cut(s) 794
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 51, 578
AlwI GGATC 3 cut(s) 215, 713, 726
AlwNI CAGNNNCTG 1 cut(s) 383
Aor13HI TCCGGA 1 cut(s) 145
ApeKI GCWGC 5 cut(s) 9, 46, 173, 332, 728
ApoI RAATTY 2 cut(s) 938, 1044
AspS9I GGNCC 4 cut(s) 70, 97, 685, 863
AsuHPI GGTGA 1 cut(s) 824
AvaII GGWCC 4 cut(s) 70, 97, 685, 863
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 788
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 5 cut(s) 21, 58, 185, 319, 715
BccI CCATC 5 cut(s) 150, 403, 697, 743, 1130
BciT130I CCWGG 2 cut(s) 6, 101
BclI TGATCA 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 51, 578
BfaI CTAG 2 cut(s) 293, 708
BfmI CTRYAG 1 cut(s) 608
BglII AGATCT 2 cut(s) 295, 1175
BisI GCNGC 5 cut(s) 10, 47, 174, 333, 729
BlsI GCNGC 5 cut(s) 11, 48, 175, 334, 730
Bme1390I CCNGG 2 cut(s) 6, 101
Bme18I GGWCC 4 cut(s) 70, 97, 685, 863
BmgT120I GGNCC 4 cut(s) 70, 97, 685, 863
BmiI GGNNCC 5 cut(s) 687, 720, 790, 1248, 1332
BmrFI CCNGG 2 cut(s) 6, 101
BmsI GCATC 3 cut(s) 715, 1271, 1371
BplI GAGNNNNNCTC 2 cut(s) 971, 1003
BpmI CTGGAG 1 cut(s) 973
BpuEI CTTGAG 2 cut(s) 119, 1013
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 78, 235
BsaJI CCNNGG 2 cut(s) 73, 93
BsaWI WCCGGW 3 cut(s) 120, 145, 1249
BsaXI ACNNNNNCTCC 2 cut(s) 1051, 1081
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 286, 613, 1243
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 4 cut(s) 132, 592, 634, 1237
Bse3DI GCAATG 1 cut(s) 473
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 2 cut(s) 6, 101
BseDI CCNNGG 2 cut(s) 73, 93
BseGI GGATG 6 cut(s) 142, 414, 657, 754, 1141, 1262
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 4 cut(s) 127, 286, 613, 1243
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 2 cut(s) 30, 939
BseNI ACTGG 4 cut(s) 132, 592, 634, 1237
BseRI GAGGAG 3 cut(s) 407, 596, 1059
BseXI GCAGC 5 cut(s) 21, 58, 185, 319, 715
BseYI CCCAGC 1 cut(s) 647
Bsh1285I CGRYCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 788
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 5 cut(s) 52, 121, 146, 252, 1250
BslI CCNNNNNNNGG 4 cut(s) 127, 286, 613, 1243
BsmAI GTCTC 2 cut(s) 51, 578
BsmBI CGTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 731
Bsp1286I GDGCHC 1 cut(s) 475
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
BspACI CCGC 2 cut(s) 503, 1317
BspCNI CTCAG 2 cut(s) 31, 940
BspEI TCCGGA 1 cut(s) 145
BspLI GGNNCC 5 cut(s) 687, 720, 790, 1248, 1332
BspPI GGATC 3 cut(s) 215, 713, 726
BspT107I GGYRCC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 473
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 4 cut(s) 132, 592, 634, 1237
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 73, 93
BssMI GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
BssNAI GTATAC 1 cut(s) 1059
BssNI GRCGYC 2 cut(s) 78, 235
Bst1107I GTATAC 1 cut(s) 1059
Bst2UI CCWGG 2 cut(s) 6, 101
Bst4CI ACNGT 4 cut(s) 199, 373, 385, 620
BstACI GRCGYC 2 cut(s) 78, 235
BstC8I GCNNGC 3 cut(s) 253, 787, 835
BstDEI CTNAG 4 cut(s) 39, 948, 1116, 1179
BstDSI CCRYGG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 611
BstF5I GGATG 6 cut(s) 142, 414, 657, 754, 1141, 1262
BstKTI GATC 6 cut(s) 17, 223, 298, 577, 721, 1178
BstMAI GTCTC 2 cut(s) 51, 578
BstMBI GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 3 cut(s) 52, 902, 1030
BstNI CCWGG 2 cut(s) 6, 101
BstNSI RCATGY 1 cut(s) 1390
BstSCI CCNGG 2 cut(s) 4, 99
BstSFI CTRYAG 1 cut(s) 608
BstV1I GCAGC 5 cut(s) 21, 58, 185, 319, 715
BstX2I RGATCY 3 cut(s) 295, 718, 1175
BstYI RGATCY 3 cut(s) 295, 718, 1175
BstZ17I GTATAC 1 cut(s) 1059
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 6 cut(s) 142, 414, 657, 754, 1141, 1262
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 2 cut(s) 625, 903
Cac8I GCNNGC 3 cut(s) 253, 787, 835
CaiI CAGNNNCTG 1 cut(s) 383
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 4 cut(s) 70, 97, 685, 863
CseI GACGC 2 cut(s) 67, 68
Csp6I GTAC 3 cut(s) 139, 952, 1279
CspCI CAANNNNNGTGG 4 cut(s) 414, 449, 906, 941
CviAII CATG 6 cut(s) 325, 404, 762, 794, 1049, 1387
CviQI GTAC 3 cut(s) 139, 952, 1279
DdeI CTNAG 4 cut(s) 39, 948, 1116, 1179
DpnI GATC 6 cut(s) 16, 222, 297, 576, 720, 1177
DpnII GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
DraI TTTAAA 1 cut(s) 739
Eco47I GGWCC 4 cut(s) 70, 97, 685, 863
EcoNI CCTNNNNNAGG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 4, 99
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 6 cut(s) 328, 407, 765, 797, 1052, 1390
FatI CATG 6 cut(s) 324, 403, 761, 793, 1048, 1386
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 1 cut(s) 1058
Fnu4HI GCNGC 5 cut(s) 10, 47, 174, 333, 729
FokI GGATG 6 cut(s) 129, 421, 664, 761, 1148, 1249
Fsp4HI GCNGC 5 cut(s) 10, 47, 174, 333, 729
FspBI CTAG 2 cut(s) 293, 708
GluI GCNGC 5 cut(s) 10, 47, 174, 333, 729
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 973
HapII CCGG 5 cut(s) 52, 121, 146, 252, 1250
HgaI GACGC 2 cut(s) 67, 68
Hin1I GRCGYC 2 cut(s) 78, 235
Hin1II CATG 6 cut(s) 328, 407, 765, 797, 1052, 1390
HincII GTYRAC 1 cut(s) 1287
HindII GTYRAC 1 cut(s) 1287
HinfI GANTC 1 cut(s) 1293
HpaII CCGG 5 cut(s) 52, 121, 146, 252, 1250
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 4 cut(s) 347, 863, 1059, 1287
Hpy188I TCNGA 3 cut(s) 25, 220, 544
Hpy188III TCNNGA 5 cut(s) 146, 224, 578, 722, 990
Hpy8I GTNNAC 4 cut(s) 347, 863, 1059, 1287
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 4 cut(s) 431, 1114, 1170, 1211
HpyCH4III ACNGT 4 cut(s) 199, 373, 385, 620
HpyCH4IV ACGT 2 cut(s) 235, 1298
HpyCH4V TGCA 9 cut(s) 535, 623, 713, 731, 833, 872, 1009, 1311, 1362
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 902, 1030
HpyF3I CTNAG 4 cut(s) 39, 948, 1116, 1179
HpySE526I ACGT 2 cut(s) 235, 1298
Hsp92I GRCGYC 2 cut(s) 78, 235
Hsp92II CATG 6 cut(s) 328, 407, 765, 797, 1052, 1390
Kpn2I TCCGGA 1 cut(s) 145
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
LmnI GCTCC 4 cut(s) 54, 289, 1072, 1336
Lsp1109I GCAGC 5 cut(s) 21, 58, 185, 319, 715
LweI GCATC 3 cut(s) 715, 1271, 1371
MaeI CTAG 2 cut(s) 293, 708
MaeII ACGT 2 cut(s) 235, 1298
MaeIII GTNAC 5 cut(s) 193, 412, 487, 637, 812
MalI GATC 6 cut(s) 16, 222, 297, 576, 720, 1177
MboI GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
MboII GAAGA 2 cut(s) 887, 1195
MflI RGATCY 3 cut(s) 295, 718, 1175
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 5 cut(s) 767, 817, 938, 971, 1044
MmeI TCCRAC 1 cut(s) 663
MroI TCCGGA 1 cut(s) 145
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 5 cut(s) 738, 770, 890, 1208, 1337
MslI CAYNNNNRTG 2 cut(s) 794, 980
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 5 cut(s) 52, 121, 146, 252, 1250
MspR9I CCNGG 2 cut(s) 6, 101
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 6, 101
MwoI GCNNNNNNNGC 3 cut(s) 52, 902, 1030
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 6 cut(s) 328, 407, 765, 797, 1052, 1390
NlaIV GGNNCC 5 cut(s) 687, 720, 790, 1248, 1332
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 412, 812
NspI RCATGY 1 cut(s) 1390
OliI CACNNNNGTG 1 cut(s) 794
PciI ACATGT 1 cut(s) 1386
PctI GAATGC 1 cut(s) 731
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 1293
PflMI CCANNNNNTGG 2 cut(s) 286, 1243
PkrI GCNGC 5 cut(s) 11, 48, 175, 334, 730
Ple19I CGATCG 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 70
PscI ACATGT 1 cut(s) 1386
PsiI TTATAA 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 4, 99
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 4, 99
PspN4I GGNNCC 5 cut(s) 687, 720, 790, 1248, 1332
PspPI GGNCC 4 cut(s) 70, 97, 685, 863
PspPPI RGGWCCY 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 3 cut(s) 295, 718, 1175
PvuI CGATCG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 3 cut(s) 140, 953, 1280
RsaNI GTAC 3 cut(s) 139, 952, 1279
RseI CAYNNNNRTG 2 cut(s) 794, 980
SaqAI TTAA 5 cut(s) 738, 770, 890, 1208, 1337
SatI GCNGC 5 cut(s) 10, 47, 174, 333, 729
Sau3AI GATC 6 cut(s) 14, 220, 295, 574, 718, 1175
Sau96I GGNCC 4 cut(s) 70, 97, 685, 863
ScrFI CCNGG 2 cut(s) 6, 101
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 3 cut(s) 715, 1271, 1371
SfcI CTRYAG 1 cut(s) 608
SinI GGWCC 4 cut(s) 70, 97, 685, 863
SmiMI CAYNNNNRTG 2 cut(s) 794, 980
SmlI CTYRAG 2 cut(s) 134, 1028
SmoI CTYRAG 2 cut(s) 134, 1028
Sse9I AATT 5 cut(s) 767, 817, 938, 971, 1044
SsiI CCGC 2 cut(s) 503, 1317
SspMI CTAG 2 cut(s) 293, 708
StyD4I CCNGG 2 cut(s) 4, 99
TaaI ACNGT 4 cut(s) 199, 373, 385, 620
TaiI ACGT 2 cut(s) 238, 1301
TaqI TCGA 4 cut(s) 17, 695, 701, 935
TasI AATT 5 cut(s) 767, 817, 938, 971, 1044
TatI WGTACW 2 cut(s) 951, 1278
TfiI GAWTC 1 cut(s) 1293
Tru1I TTAA 5 cut(s) 738, 770, 890, 1208, 1337
Tru9I TTAA 5 cut(s) 738, 770, 890, 1208, 1337
TscAI CASTG 2 cut(s) 625, 903
TseFI GTSAC 2 cut(s) 412, 812
TseI GCWGC 5 cut(s) 9, 46, 173, 332, 728
Tsp45I GTSAC 2 cut(s) 412, 812
TspDTI ATGAA 2 cut(s) 1037, 1091
TspGWI ACGGA 3 cut(s) 110, 512, 992
TspRI CASTG 2 cut(s) 625, 903
Van91I CCANNNNNTGG 2 cut(s) 286, 1243
VpaK11BI GGWCC 4 cut(s) 70, 97, 685, 863
XagI CCTNNNNNAGG 1 cut(s) 611
XapI RAATTY 2 cut(s) 938, 1044
XceI RCATGY 1 cut(s) 1390
XmiI GTMKAC 1 cut(s) 1058
XspI CTAG 2 cut(s) 293, 708
ZraI GACGTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.