Rmu_sc0012443.1_g000009

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012443.1
OG0013490
Physical Location & Seq
Forward (+)
39229 .. 43909
4681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012443.1_g000009.1.cds

Sequence Viewer

Length: 1257 bp
atgccgtcgaaccgatcgaaatcggagaagcctgaagctgcgaagcagctccggcgagacccctatgaggtcctcggcgtctcgaggaactccaccgaccaggaaatcaaaagcgcttaccggaaaatggccctcaagtaccatcctgacaagaatgcaaatgaccctaaagcagctgatatttttaaggaggtcacattttcttataatatcttgtctgatccagacaaacggcggcagtatgacacatctggctttgaggctgttgaatcagaaagccaagaattggagctggatctttcaagtctgggtgctgtaaataccatgtttgctgccctttttagtaaactcggggtgccaattaagacaactgtgtcagctactgtcctggaggaggcactaaatggcatggtcactgttcgtccacttttattggggcagctgataacaaaaaaggttgagaagcaatgttgtcacttctattcagtcgaaatatcagaaagcgaagcacgagctggattggtttgccaagtgcattcatctgacaaaagcaagttcaagttgctatattttgatcgggaagacaatggtggattgggcctttgcctacaggaggacagtgcaaaaacaggaaaggttacatctgctgggatgtattttcttggtttccccgtatatcggttggatcacacattgaactcgatggctgctgcaaaggatccagattcagccttcttcaaaaagctggatgggtttcagccatgtgaattaaccgagctgaaagctggcacccatgtgtttgctgtttatggtgacaacttttttaaaagtgcaacctacacaatagaagttctttcttgtgaacccttttcagaagagaaggaaagtttaagggctgttgaagctcaaatacttacaaaacgagtggagttgtcaaaatttgagacagagtacagagaggttctggcacaattcacagagatgaccagtagatatacgcaagaaatgcaagagattgatgagcttctcaagcagaggaatgaaatacatgcctcatatacaaatgctcctccaataaagcggagttcaagtaggagtagaaataggggtcattctaaggaggacaaagaagatgctccaaaaaccttgctgacacaagaagtccagtcaggcgtaaaatacccaatttttggttgtggtggtttggcatccattgaagcaaagtacaaggctgaggttttggtacaccagtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

418

Amino Acids

46.91

Weight (kDa)

6.02

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24120
fragaria_vesca FvH4_4g35120
malus_domestica MD13G1086100.v1.1 MD16G1085500.v1.1
prunus_persica Prupe.1G260600_v2.0.a1 Prupe.1G260600_v2.0.a1
pyrus_communis pycom16g07390
rosa_chinensis RchiOBHm_Chr4g0444721
rosa_laevigata RLG00000005809
rosa_multiflora Rmu_sc0012443.1_g000009
rosa_roxburghii Rroxscaffold_5G00385230
rosa_rugosa Rorug04G0354700 Rorug04G0354800 Rorug04G0354900
rosa_samantha Rh4BG426600 Rh4CG441400 Rh4DG422400
rosa_wichuraiana Rw4G035650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AasI GACNNNNNNGTC 1 cut(s) 373
AccB1I GGYRCC 2 cut(s) 355, 788
AccB7I CCANNNNNTGG 2 cut(s) 286, 1190
AciI CCGC 2 cut(s) 235, 1081
AclWI GGATC 5 cut(s) 215, 303, 693, 713, 726
AcsI RAATTY 1 cut(s) 938
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 140, 953, 1226, 1245
AfeI AGCGCT 1 cut(s) 115
AfiI CCNNNNNNNGG 7 cut(s) 67, 127, 286, 394, 613, 678, 1190
AgsI TTSAA 8 cut(s) 269, 303, 559, 697, 739, 902, 1089, 1217
AjnI CCWGG 2 cut(s) 99, 387
AleI CACNNNNGTG 1 cut(s) 794
Alw26I GTCTC 3 cut(s) 51, 85, 938
AlwI GGATC 5 cut(s) 215, 303, 693, 713, 726
AlwNI CAGNNNCTG 1 cut(s) 383
Ama87I CYCGRG 2 cut(s) 82, 350
Aor51HI AGCGCT 1 cut(s) 115
AoxI GGCC 2 cut(s) 129, 598
ApeKI GCWGC 7 cut(s) 38, 46, 173, 332, 439, 707, 710
ApoI RAATTY 1 cut(s) 938
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 70, 130, 598
AsuHPI GGTGA 1 cut(s) 824
AvaI CYCGRG 2 cut(s) 82, 350
AvaII GGWCC 1 cut(s) 70
BaeI ACNNNNGTAYC 1 cut(s) 1235
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 2 cut(s) 355, 788
BarI GAAGNNNNNNTAC 2 cut(s) 894, 926
BauI CACGAG 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 588
BbvCI CCTCAGC 1 cut(s) 1233
BbvI GCAGC 7 cut(s) 25, 58, 185, 319, 451, 694, 697
BccI CCATC 3 cut(s) 150, 697, 743
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 101, 389
BcoDI GTCTC 3 cut(s) 51, 85, 938
BfmI CTRYAG 1 cut(s) 608
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 8 cut(s) 39, 47, 174, 236, 333, 440, 708, 711
BlsI GCNGC 8 cut(s) 40, 48, 175, 237, 334, 441, 709, 712
Bme1390I CCNGG 2 cut(s) 101, 389
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 2 cut(s) 82, 350
BmgT120I GGNCC 3 cut(s) 70, 130, 598
BmiI GGNNCC 3 cut(s) 357, 720, 790
BmrFI CCNGG 2 cut(s) 101, 389
BmsI GCATC 2 cut(s) 1123, 1217
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 1233
BpuEI CTTGAG 2 cut(s) 119, 1013
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 120
BsaXI ACNNNNNCTCC 4 cut(s) 1051, 1075, 1081, 1105
Bsc4I CCNNNNNNNGG 7 cut(s) 67, 127, 286, 394, 613, 678, 1190
Bse1I ACTGG 3 cut(s) 987, 1165, 1249
Bse3DI GCAATG 1 cut(s) 473
Bse8I GATNNNNATC 1 cut(s) 19
BseBI CCWGG 2 cut(s) 101, 389
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 4 cut(s) 142, 657, 754, 1208
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 7 cut(s) 67, 127, 286, 394, 613, 678, 1190
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 1 cut(s) 1224
BseNI ACTGG 3 cut(s) 987, 1165, 1249
BseRI GAGGAG 2 cut(s) 407, 1059
BseXI GCAGC 7 cut(s) 25, 58, 185, 319, 451, 694, 697
BseYI CCCAGC 1 cut(s) 647
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 131, 600
BshNI GGYRCC 2 cut(s) 355, 788
BsiEI CGRYCG 1 cut(s) 17
BsiHKCI CYCGRG 2 cut(s) 82, 350
BsiSI CCGG 2 cut(s) 52, 121
BslI CCNNNNNNNGG 7 cut(s) 67, 127, 286, 394, 613, 678, 1190
BsmAI GTCTC 3 cut(s) 51, 85, 938
BsmBI CGTCTC 1 cut(s) 85
BsmI GAATGC 2 cut(s) 160, 535
BsnI GGCC 2 cut(s) 131, 600
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 2 cut(s) 82, 350
Bsp143I GATC 6 cut(s) 14, 220, 295, 574, 685, 718
BspACI CCGC 2 cut(s) 235, 1081
BspANI GGCC 2 cut(s) 131, 600
BspCNI CTCAG 1 cut(s) 1225
BspLI GGNNCC 3 cut(s) 357, 720, 790
BspPI GGATC 5 cut(s) 215, 303, 693, 713, 726
BspT107I GGYRCC 2 cut(s) 355, 788
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 473
BsrI ACTGG 3 cut(s) 987, 1165, 1249
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 6 cut(s) 14, 220, 295, 574, 685, 718
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 101, 389
Bst4CI ACNGT 4 cut(s) 373, 385, 418, 620
Bst6I CTCTTC 1 cut(s) 870
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstC8I GCNNGC 1 cut(s) 787
BstDEI CTNAG 2 cut(s) 1116, 1233
BstENI CCTNNNNNAGG 2 cut(s) 392, 611
BstF5I GGATG 4 cut(s) 142, 657, 754, 1208
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 6 cut(s) 17, 223, 298, 577, 688, 721
BstMAI GTCTC 3 cut(s) 51, 85, 938
BstMBI GATC 6 cut(s) 14, 220, 295, 574, 685, 718
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 4 cut(s) 52, 902, 1006, 1030
BstNI CCWGG 2 cut(s) 101, 389
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 2 cut(s) 99, 387
BstSFI CTRYAG 1 cut(s) 608
BstV1I GCAGC 7 cut(s) 25, 58, 185, 319, 451, 694, 697
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 2 cut(s) 295, 718
BstYI RGATCY 2 cut(s) 295, 718
BsuRI GGCC 2 cut(s) 131, 600
BtsCI GGATG 4 cut(s) 142, 657, 754, 1208
BtsIMutI CAGTG 3 cut(s) 414, 625, 1256
Cac8I GCNNGC 1 cut(s) 787
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 70, 130, 598
CseI GACGC 1 cut(s) 67
Csp6I GTAC 4 cut(s) 139, 952, 1225, 1244
CspCI CAANNNNNGTGG 4 cut(s) 414, 449, 906, 941
CviAII CATG 5 cut(s) 325, 409, 762, 794, 1049
CviQI GTAC 4 cut(s) 139, 952, 1225, 1244
DdeI CTNAG 2 cut(s) 1116, 1233
DpnI GATC 6 cut(s) 16, 222, 297, 576, 687, 720
DpnII GATC 6 cut(s) 14, 220, 295, 574, 685, 718
DraI TTTAAA 1 cut(s) 826
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 82, 350
EcoNI CCTNNNNNAGG 2 cut(s) 392, 611
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 99, 387
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 5 cut(s) 328, 412, 765, 797, 1052
FatI CATG 5 cut(s) 324, 408, 761, 793, 1048
Fnu4HI GCNGC 8 cut(s) 39, 47, 174, 236, 333, 440, 708, 711
FokI GGATG 4 cut(s) 129, 664, 761, 1195
Fsp4HI GCNGC 8 cut(s) 39, 47, 174, 236, 333, 440, 708, 711
GlaI GCGC 1 cut(s) 115
GluI GCNGC 8 cut(s) 39, 47, 174, 236, 333, 440, 708, 711
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 131, 600
HapII CCGG 2 cut(s) 52, 121
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 5 cut(s) 328, 412, 765, 797, 1052
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 2 cut(s) 269, 725
HpaII CCGG 2 cut(s) 52, 121
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 4 cut(s) 347, 425, 863, 1246
Hpy188I TCNGA 6 cut(s) 25, 220, 274, 499, 544, 874
Hpy188III TCNNGA 5 cut(s) 82, 146, 224, 578, 722
Hpy8I GTNNAC 4 cut(s) 347, 425, 863, 1246
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 742, 874
HpyCH4III ACNGT 4 cut(s) 373, 385, 418, 620
HpyCH4V TGCA 6 cut(s) 158, 535, 623, 713, 833, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 902, 1006, 1030
HpyF3I CTNAG 2 cut(s) 1116, 1233
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 5 cut(s) 328, 412, 765, 797, 1052
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 6 cut(s) 14, 220, 295, 574, 685, 718
LmnI GCTCC 4 cut(s) 54, 289, 1072, 1141
Lsp1109I GCAGC 7 cut(s) 25, 58, 185, 319, 451, 694, 697
LweI GCATC 2 cut(s) 1123, 1217
MaeIII GTNAC 5 cut(s) 193, 412, 473, 637, 812
MalI GATC 6 cut(s) 16, 222, 297, 576, 687, 720
MboI GATC 6 cut(s) 14, 220, 295, 574, 685, 718
MboII GAAGA 4 cut(s) 593, 727, 887, 1142
MflI RGATCY 2 cut(s) 295, 718
MluCI AATT 6 cut(s) 284, 360, 767, 938, 971, 1185
MmeI TCCRAC 1 cut(s) 663
MseI TTAA 6 cut(s) 186, 363, 770, 825, 890, 1255
MslI CAYNNNNRTG 2 cut(s) 794, 980
MspA1I CMGCKG 2 cut(s) 176, 442
MspI CCGG 2 cut(s) 52, 121
MspR9I CCNGG 2 cut(s) 101, 389
Mva1269I GAATGC 2 cut(s) 160, 535
MvaI CCWGG 2 cut(s) 101, 389
MwoI GCNNNNNNNGC 4 cut(s) 52, 902, 1006, 1030
NdeII GATC 6 cut(s) 14, 220, 295, 574, 685, 718
NlaIII CATG 5 cut(s) 328, 412, 765, 797, 1052
NlaIV GGNNCC 3 cut(s) 357, 720, 790
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 4 cut(s) 193, 412, 473, 812
NspI RCATGY 1 cut(s) 1052
OliI CACNNNNGTG 1 cut(s) 794
PaeR7I CTCGAG 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 160, 535
PfeI GAWTC 2 cut(s) 269, 725
PflMI CCANNNNNTGG 2 cut(s) 286, 1190
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 8 cut(s) 40, 48, 175, 237, 334, 441, 709, 712
Ple19I CGATCG 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 70
PsiI TTATAA 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 99, 387
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 99, 387
PspN4I GGNNCC 3 cut(s) 357, 720, 790
PspPI GGNCC 3 cut(s) 70, 130, 598
PspPPI RGGWCCY 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 2 cut(s) 295, 718
PvuI CGATCG 1 cut(s) 17
PvuII CAGCTG 2 cut(s) 176, 442
RsaI GTAC 4 cut(s) 140, 953, 1226, 1245
RsaNI GTAC 4 cut(s) 139, 952, 1225, 1244
RseI CAYNNNNRTG 2 cut(s) 794, 980
SaqAI TTAA 6 cut(s) 186, 363, 770, 825, 890, 1255
SatI GCNGC 8 cut(s) 39, 47, 174, 236, 333, 440, 708, 711
Sau3AI GATC 6 cut(s) 14, 220, 295, 574, 685, 718
Sau96I GGNCC 3 cut(s) 70, 130, 598
ScrFI CCNGG 2 cut(s) 101, 389
SfaNI GCATC 2 cut(s) 1123, 1217
SfcI CTRYAG 1 cut(s) 608
Sfr274I CTCGAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 794, 980
SmlI CTYRAG 3 cut(s) 82, 134, 1028
SmoI CTYRAG 3 cut(s) 82, 134, 1028
Sse9I AATT 6 cut(s) 284, 360, 767, 938, 971, 1185
SsiI CCGC 2 cut(s) 235, 1081
StyD4I CCNGG 2 cut(s) 99, 387
TaaI ACNGT 4 cut(s) 373, 385, 418, 620
TaqI TCGA 5 cut(s) 8, 17, 83, 489, 701
TasI AATT 6 cut(s) 284, 360, 767, 938, 971, 1185
TatI WGTACW 2 cut(s) 951, 1224
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 2 cut(s) 269, 725
Tru1I TTAA 6 cut(s) 186, 363, 770, 825, 890, 1255
Tru9I TTAA 6 cut(s) 186, 363, 770, 825, 890, 1255
TscAI CASTG 3 cut(s) 421, 625, 1256
TseFI GTSAC 4 cut(s) 193, 412, 473, 812
TseI GCWGC 7 cut(s) 38, 46, 173, 332, 439, 707, 710
Tsp45I GTSAC 4 cut(s) 193, 412, 473, 812
TspDTI ATGAA 2 cut(s) 528, 1056
TspRI CASTG 3 cut(s) 421, 625, 1256
Van91I CCANNNNNTGG 2 cut(s) 286, 1190
VpaK11BI GGWCC 1 cut(s) 70
XagI CCTNNNNNAGG 2 cut(s) 392, 611
XapI RAATTY 1 cut(s) 938
XceI RCATGY 1 cut(s) 1052
XhoI CTCGAG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.