Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016597

Physical Location & Seq

Genomic Coordinates Reverse (-)

3479066 .. 3481041

Gene Structure 1976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGATTATGTGGGAAACAGCAGTTGTGTTTTGTCTCTGTTCGTTGTCTTTGGTTTCTTCACACAGCAGGAAATTCACAACACCAAACGTGACACGCCTCACAGATCAATTCAGTAAGATCGCCATTGAAAATGGCTTCTCCAGACGTTTCGGAGCTCACAATATTCAGGTCAATGGCTCCCTCGCTAAGCTCACTCTCGACAAATCCTCCGGAGCTGGGTTGGTGTCAAAGAACAAGTATCACTATGGTTTCTTCAGTGCAAGACTCAAGCTTCCCGCTGGATTTGCCTCTGGTGTTGTGGTTGCTTTCTATTTATCAAACGCAGAGACTTATCCGAAAAGCCACGACGAGATAGACATAGAATTGTTGGGTAGAAGTAGGAGAGATGATTGGACGATCCAGACGAATGTATATGCAAATGGAAGTACTAGAACGGGAAGAGAAGAGAAGTTTTATTTTTGGTTCGATCCAACGCAAGCCTTTCACGACTATACCCTCATTTGGAACTCCCACCATACTGTATTTTTGGTAGACAACATTCCGGTTAGGCAGTTTCCAAACCGGGGAGCCTTCACAAGCGCGTACCCGTCTAAACCGATGTCTCTATACGTCACCGTTTGGGACGGTTCAGAGTGGGCCACTAAAGGTGGTAAGTACCCCGTCAACTACAAGTACGCCCCTTTCGTGGTTTCCGTTGCTGACGTGGAGTTAAGTGGCTGTTCCGTTAACAACGGCTCCTCTACCGGGTCCGGGCCATGTACCAAGTCGGGCGGGTCGATTTCGAGTCTGGACCCTGTTGATGGTCAGGATTTTGCCACGTTGTCGAAGAATCAGATCAATGCCATGGATTGGGCTAGGAGAAAGCTGATGTTCTATTCTTATTGCAGTGATAAGCCAAGATACAAAGTCATGCCTGCTGAGTGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0031224 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

310

Amino Acids

34.64

Weight (kDa)

9.09

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	47 - 225	1.1e-54	Glycosyl hydrolases family 16
XET_C	PF06955	273 - 309	3.5e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10550
fragaria_vesca	FvH4_4g34630
malus_domestica	MD16G1091200.v1.1
prunus_persica	Prupe.1G255100_v2.0.a1
pyrus_communis	pycom16g07790
rosa_chinensis	RchiOBHm_Chr4g0443991
rosa_laevigata	RLG00000005869
rosa_multiflora	Rmu_co8312191.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384560
rosa_rugosa	Rorug04G0348900
rosa_samantha	Rh4AG409600 Rh4BG420700 Rh4DG415700
rosa_wichuraiana	Rw4G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	852
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	1 cut(s)	584
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	2 cut(s)	279, 774
AclWI	GGATC	2 cut(s)	394, 464
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	241
AfaI	GTAC	5 cut(s)	430, 587, 659, 677, 763
AfiI	CCNNNNNNNGG	8 cut(s)	219, 504, 566, 688, 747, 753, 803, 852
AgsI	TTSAA	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	706
AluBI	AGCT	5 cut(s)	158, 193, 218, 274, 868
AluI	AGCT	5 cut(s)	158, 193, 218, 274, 868
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	41, 323, 609
AlwI	GGATC	2 cut(s)	394, 464
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	2 cut(s)	639, 755
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	4 cut(s)	639, 750, 755, 793
AsuC2I	CCSGG	3 cut(s)	566, 748, 754
AsuHPI	GGTGA	1 cut(s)	607
AvaII	GGWCC	2 cut(s)	750, 793
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BccI	CCATC	1 cut(s)	797
BceAI	ACGGC	1 cut(s)	751
BcnI	CCSGG	3 cut(s)	566, 748, 754
BcoDI	GTCTC	3 cut(s)	41, 323, 609
BfaI	CTAG	2 cut(s)	432, 858
BlpI	GCTNAGC	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	566, 748, 754
Bme18I	GGWCC	2 cut(s)	750, 793
BmgBI	CACGTC	1 cut(s)	706
BmgT120I	GGNCC	4 cut(s)	639, 750, 755, 793
BmiI	GGNNCC	5 cut(s)	181, 571, 739, 751, 795
BmrFI	CCNGG	3 cut(s)	566, 748, 754
BpmI	CTGGAG	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	3 cut(s)	566, 748, 754
BsaJI	CCNNGG	2 cut(s)	565, 846
BsaWI	WCCGGW	2 cut(s)	212, 544
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 722, 752
Bsc4I	CCNNNNNNNGG	8 cut(s)	219, 504, 566, 688, 747, 753, 803, 852
BseAI	TCCGGA	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	565, 846
BseLI	CCNNNNNNNGG	8 cut(s)	219, 504, 566, 688, 747, 753, 803, 852
BseMII	CTCAG	1 cut(s)	912
BseRI	GAGGAG	1 cut(s)	730
BseYI	CCCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	2 cut(s)	641, 757
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	5 cut(s)	213, 545, 565, 747, 753
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	8 cut(s)	219, 504, 566, 688, 747, 753, 803, 852
BsmAI	GTCTC	3 cut(s)	41, 323, 609
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	641, 757
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	106, 120, 399, 469, 837
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	2 cut(s)	279, 774
BspANI	GGCC	2 cut(s)	641, 757
BspCNI	CTCAG	1 cut(s)	913
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	5 cut(s)	181, 571, 739, 751, 795
BspPI	GGATC	2 cut(s)	394, 464
BssECI	CCNNGG	2 cut(s)	565, 846
BssMI	GATC	5 cut(s)	106, 120, 399, 469, 837
BssT1I	CCWWGG	1 cut(s)	846
Bst4CI	ACNGT	3 cut(s)	523, 619, 629
Bst6I	CTCTTC	2 cut(s)	436, 441
BstC8I	GCNNGC	2 cut(s)	480, 918
BstDEI	CTNAG	2 cut(s)	189, 921
BstDSI	CCRYGG	1 cut(s)	846
BstFNI	CGCG	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	5 cut(s)	109, 123, 402, 472, 840
BstMAI	GTCTC	3 cut(s)	41, 323, 609
BstMBI	GATC	5 cut(s)	106, 120, 399, 469, 837
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSCI	CCNGG	3 cut(s)	564, 746, 752
BstUI	CGCG	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	641, 757
BtgI	CCRYGG	1 cut(s)	846
BtrI	CACGTC	1 cut(s)	706
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	2 cut(s)	265, 895
Cac8I	GCNNGC	2 cut(s)	480, 918
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	4 cut(s)	639, 750, 755, 793
Csp6I	GTAC	5 cut(s)	429, 586, 658, 676, 762
CviAII	CATG	3 cut(s)	759, 847, 913
CviQI	GTAC	5 cut(s)	429, 586, 658, 676, 762
DdeI	CTNAG	2 cut(s)	189, 921
DpnI	GATC	5 cut(s)	108, 122, 401, 471, 839
DpnII	GATC	5 cut(s)	106, 120, 399, 469, 837
Eam1104I	CTCTTC	2 cut(s)	436, 441
EarI	CTCTTC	2 cut(s)	436, 441
Ecl136II	GAGCTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	750, 793
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	3 cut(s)	762, 850, 916
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	3 cut(s)	758, 846, 912
FauI	CCCGC	2 cut(s)	286, 767
FblI	GTMKAC	1 cut(s)	534
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	432, 858
GlaI	GCGC	1 cut(s)	583
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	641, 757
HapII	CCGG	5 cut(s)	213, 545, 565, 747, 753
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	3 cut(s)	762, 850, 916
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	2 cut(s)	667, 730
HindII	GTYRAC	2 cut(s)	667, 730
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	267, 787, 832
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	5 cut(s)	213, 545, 565, 747, 753
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	3 cut(s)	535, 667, 730
Hpy188I	TCNGA	4 cut(s)	155, 339, 634, 837
Hpy188III	TCNNGA	7 cut(s)	144, 200, 213, 403, 488, 791, 809
Hpy8I	GTNNAC	3 cut(s)	535, 667, 730
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	3 cut(s)	523, 619, 629
HpyCH4IV	ACGT	5 cut(s)	90, 148, 612, 705, 821
HpyCH4V	TGCA	4 cut(s)	263, 419, 888, 927
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	189, 921
HpySE526I	ACGT	5 cut(s)	90, 148, 612, 705, 821
Hsp92II	CATG	3 cut(s)	762, 850, 916
HspAI	GCGC	1 cut(s)	582
Kpn2I	TCCGGA	1 cut(s)	212
KspAI	GTTAAC	1 cut(s)	730
Kzo9I	GATC	5 cut(s)	106, 120, 399, 469, 837
LmnI	GCTCC	5 cut(s)	155, 185, 215, 569, 743
MaeI	CTAG	2 cut(s)	432, 858
MaeII	ACGT	5 cut(s)	90, 148, 612, 705, 821
MaeIII	GTNAC	2 cut(s)	91, 613
MalI	GATC	5 cut(s)	108, 122, 401, 471, 839
MboI	GATC	5 cut(s)	106, 120, 399, 469, 837
MboII	GAAGA	6 cut(s)	16, 51, 247, 453, 458, 841
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	74, 110, 365
MlyI	GAGTC	2 cut(s)	261, 796
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	6 cut(s)	110, 194, 220, 301, 509, 751
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	2 cut(s)	713, 729
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	5 cut(s)	213, 545, 565, 747, 753
MspR9I	CCNGG	3 cut(s)	566, 748, 754
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	3 cut(s)	566, 748, 754
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	5 cut(s)	106, 120, 399, 469, 837
NlaIII	CATG	3 cut(s)	762, 850, 916
NlaIV	GGNNCC	5 cut(s)	181, 571, 739, 751, 795
NmuCI	GTSAC	2 cut(s)	91, 613
PcsI	WCGNNNNNNNCGW	4 cut(s)	404, 684, 693, 776
PfeI	GAWTC	1 cut(s)	832
PflMI	CCANNNNNTGG	1 cut(s)	852
PleI	GAGTC	2 cut(s)	261, 795
PpsI	GAGTC	2 cut(s)	261, 795
Psp124BI	GAGCTC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	218
PspN4I	GGNNCC	5 cut(s)	181, 571, 739, 751, 795
PspPI	GGNCC	4 cut(s)	639, 750, 755, 793
RsaI	GTAC	5 cut(s)	430, 587, 659, 677, 763
RsaNI	GTAC	5 cut(s)	429, 586, 658, 676, 762
SacI	GAGCTC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	713, 729
Sau3AI	GATC	5 cut(s)	106, 120, 399, 469, 837
Sau96I	GGNCC	4 cut(s)	639, 750, 755, 793
ScaI	AGTACT	1 cut(s)	430
SchI	GAGTC	2 cut(s)	261, 796
ScrFI	CCNGG	3 cut(s)	566, 748, 754
SduI	GDGCHC	1 cut(s)	160
SinI	GGWCC	2 cut(s)	750, 793
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	74, 110, 365
SsiI	CCGC	2 cut(s)	279, 774
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	432, 858
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	3 cut(s)	564, 746, 752
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	3 cut(s)	523, 619, 629
TaiI	ACGT	5 cut(s)	93, 151, 615, 708, 824
TaqI	TCGA	5 cut(s)	201, 468, 779, 785, 827
TasI	AATT	3 cut(s)	74, 110, 365
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	832
Tru1I	TTAA	2 cut(s)	713, 729
Tru9I	TTAA	2 cut(s)	713, 729
TscAI	CASTG	2 cut(s)	265, 895
TseFI	GTSAC	2 cut(s)	91, 613
Tsp45I	GTSAC	2 cut(s)	91, 613
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	685, 715
TspRI	CASTG	2 cut(s)	265, 895
Van91I	CCANNNNNTGG	1 cut(s)	852
VpaK11BI	GGWCC	2 cut(s)	750, 793
XapI	RAATTY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	2 cut(s)	432, 858
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.