Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016597

Physical Location & Seq

Genomic Coordinates Reverse (-)

2457709 .. 2458954

Gene Structure 1246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005869

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCATTTTTGCAAGAAAAACTAGTCTTCTTGTGTCTTGTGGTCTTGTGTATGAATTCAGTATCGGCCTCTTCGCGCAATAGACGCTACACAAGTCCAAGCGTGCCGCGGCTAACTGATGTTTTCCCTCATGTCTCGATTAGTAATGTGTTTTCGAAAGCTTTTGGAGGCTCGAATGTTCAGGTGACCGGTAATGGATCCATGGCCACTCTTGTTCTTGACAAAATCTCAGGTTCTGGTTTGGCATCAGTAAATAAATATCACTATGGATTCTTCAGTGCTGCTATCAAGCTGCCTCCTGGAGACTCTTCTGGAGTTGTGGTAGCTTTCTATTTGTCTAATGCAGATGTTTTCCCCCACAATCATGATGAAATAGACATAGAGCTATTAGGCCATGACAAGAGAAATGAATGGGTCATCCAAACAAATGTGTATGCAAATGGGAGTGTCAACACAGGAAGAGAGGAGAAATTTTACCTCTGGTTTGACCCAACAACACAGCACCATCAGTACACCATCATCTGGAACAACCATCACACAGTGTTTCTAGTGGACAACATCCCAGTGAGAGAGTTTCAGCATAGCAGCACATTCTACCCATCAAAACCGATGTCTGTTTACGCAACAATATGGGATGGATCAGAGTGGGCAACACATGGAGGAAAGTACCCAGTCAACTATAAGAATGCACCATTTACAGTTTCATTTGCAGAAATGGAGATGAGTGGTTGCATGTCCAATCCCAGTGCTTCTCCTTCTTCATGTTCTAAGACTCCTTCAAGTTTGGACCCAGTTGAAGGACCAGAGTTTGTGAAGTTGACTAACCAACAAGTTAGTGCTATGGATTGGGCAAGAAGTAAGCTAATGTTTTACTCTTATTGTAAAGATACATCTAGGTTTAAAGTTATGCCACCAGAGTGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0031224 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

309

Amino Acids

34.44

Weight (kDa)

6.82

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	51 - 228	1.7e-53	Glycosyl hydrolases family 16
XET_C	PF06955	272 - 307	1e-13	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10550
fragaria_vesca	FvH4_4g34630
malus_domestica	MD16G1091200.v1.1
prunus_persica	Prupe.1G255100_v2.0.a1
pyrus_communis	pycom16g07790
rosa_chinensis	RchiOBHm_Chr4g0443991
rosa_laevigata	RLG00000005869
rosa_multiflora	Rmu_co8312191.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384560
rosa_rugosa	Rorug04G0348900
rosa_samantha	Rh4AG409600 Rh4BG420700 Rh4DG415700
rosa_wichuraiana	Rw4G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccII	CGCG	2 cut(s)	76, 109
AciI	CCGC	2 cut(s)	107, 109
AclWI	GGATC	3 cut(s)	192, 205, 646
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	55, 470
AcuI	CTGAAG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	512, 668
AfiI	CCNNNNNNNGG	2 cut(s)	522, 797
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	780, 797
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	298
AleI	CACNNNNGTG	1 cut(s)	916
AluBI	AGCT	5 cut(s)	161, 292, 326, 385, 862
AluI	AGCT	5 cut(s)	161, 292, 326, 385, 862
Alw26I	GTCTC	2 cut(s)	139, 297
AlwI	GGATC	3 cut(s)	192, 205, 646
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	66, 204, 391
ApeKI	GCWGC	3 cut(s)	281, 292, 585
ApoI	RAATTY	2 cut(s)	55, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AsiGI	ACCGGT	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	787, 800
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	787, 800
BalI	TGGCCA	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	268, 279, 597
BccI	CCATC	5 cut(s)	513, 524, 540, 607, 629
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	139, 297
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	3 cut(s)	23, 548, 894
BisI	GCNGC	5 cut(s)	107, 110, 282, 293, 586
BlsI	GCNGC	5 cut(s)	108, 111, 283, 294, 587
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	2 cut(s)	787, 800
BmgT120I	GGNCC	2 cut(s)	787, 800
BmiI	GGNNCC	2 cut(s)	199, 789
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	4 cut(s)	557, 665, 738, 785
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	4 cut(s)	557, 665, 738, 785
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	2 cut(s)	321, 333
Bpu14I	TTCGAA	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	107, 201
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 797
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	4 cut(s)	563, 671, 744, 791
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	107, 201
BseGI	GGATG	3 cut(s)	417, 558, 640
BseLI	CCNNNNNNNGG	2 cut(s)	522, 797
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	4 cut(s)	563, 671, 744, 791
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	268, 279, 597
Bsh1236I	CGCG	2 cut(s)	76, 109
BshFI	GGCC	3 cut(s)	68, 206, 393
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	522, 797
BsmAI	GTCTC	2 cut(s)	139, 297
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	3 cut(s)	68, 206, 393
Bsp119I	TTCGAA	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	197, 638
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	2 cut(s)	107, 109
BspANI	GGCC	3 cut(s)	68, 206, 393
BspCNI	CTCAG	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	76, 109
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	199, 789
BspPI	GGATC	3 cut(s)	192, 205, 646
BspT104I	TTCGAA	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	4 cut(s)	563, 671, 744, 791
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	107, 201
BssMI	GATC	2 cut(s)	197, 638
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	541, 700
Bst6I	CTCTTC	3 cut(s)	76, 313, 454
BstBI	TTCGAA	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	229, 768
BstDSI	CCRYGG	2 cut(s)	107, 201
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	417, 558, 640
BstFNI	CGCG	2 cut(s)	76, 109
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	200, 641
BstMAI	GTCTC	2 cut(s)	139, 297
BstMBI	GATC	2 cut(s)	197, 638
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	736
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	298
BstUI	CGCG	2 cut(s)	76, 109
BstV1I	GCAGC	3 cut(s)	268, 279, 597
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	68, 206, 393
BtgI	CCRYGG	2 cut(s)	107, 201
BtsCI	GGATG	3 cut(s)	417, 558, 640
BtsIMutI	CAGTG	4 cut(s)	283, 546, 570, 751
Cac8I	GCNNGC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	787, 800
Cfr42I	CCGCGG	1 cut(s)	110
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	511, 667
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	7 cut(s)	131, 202, 365, 395, 656, 733, 762
CviQI	GTAC	2 cut(s)	511, 667
DdeI	CTNAG	2 cut(s)	229, 768
DpnI	GATC	2 cut(s)	199, 640
DpnII	GATC	2 cut(s)	197, 638
DraI	TTTAAA	1 cut(s)	901
DraIII	CACNNNGTG	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	3 cut(s)	76, 313, 454
EarI	CTCTTC	3 cut(s)	76, 313, 454
Eco130I	CCWWGG	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	787, 800
Eco57I	CTGAAG	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	184
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	7 cut(s)	134, 205, 368, 398, 659, 736, 765
FatI	CATG	7 cut(s)	130, 201, 364, 394, 655, 732, 761
Fnu4HI	GCNGC	5 cut(s)	107, 110, 282, 293, 586
FokI	GGATG	3 cut(s)	404, 545, 647
Fsp4HI	GCNGC	5 cut(s)	107, 110, 282, 293, 586
FspBI	CTAG	3 cut(s)	23, 548, 894
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	5 cut(s)	107, 110, 282, 293, 586
GsuI	CTGGAG	2 cut(s)	321, 333
HaeIII	GGCC	3 cut(s)	68, 206, 393
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	7 cut(s)	134, 205, 368, 398, 659, 736, 765
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	3 cut(s)	451, 676, 819
HindII	GTYRAC	3 cut(s)	451, 676, 819
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	3 cut(s)	270, 305, 772
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	6 cut(s)	451, 513, 553, 619, 676, 819
Hpy188I	TCNGA	1 cut(s)	643
Hpy188III	TCNNGA	5 cut(s)	136, 218, 312, 365, 523
Hpy8I	GTNNAC	6 cut(s)	451, 513, 553, 619, 676, 819
HpyAV	CCTTC	3 cut(s)	765, 786, 791
HpyCH4III	ACNGT	2 cut(s)	541, 700
HpyCH4V	TGCA	7 cut(s)	13, 344, 437, 689, 710, 732, 921
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	229, 768
Hsp92II	CATG	7 cut(s)	134, 205, 368, 398, 659, 736, 765
HspAI	GCGC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	197, 638
Lsp1109I	GCAGC	3 cut(s)	268, 279, 597
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	3 cut(s)	23, 548, 894
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	199, 640
MboI	GATC	2 cut(s)	197, 638
MboII	GAAGA	6 cut(s)	19, 63, 265, 300, 471, 750
MflI	RGATCY	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	2 cut(s)	55, 470
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	299, 766
MnlI	CCTC	7 cut(s)	79, 138, 161, 306, 457, 488, 653
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	900
MslI	CAYNNNNRTG	3 cut(s)	363, 563, 916
Msp20I	TGGCCA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	2 cut(s)	76, 109
MwoI	GCNNNNNNNGC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	197, 638
NlaIII	CATG	7 cut(s)	134, 205, 368, 398, 659, 736, 765
NlaIV	GGNNCC	2 cut(s)	199, 789
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	916
PagI	TCATGA	1 cut(s)	364
PctI	GAATGC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	522
PfoI	TCCNGGA	1 cut(s)	298
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	5 cut(s)	108, 111, 283, 294, 587
PleI	GAGTC	2 cut(s)	299, 766
PpsI	GAGTC	2 cut(s)	299, 766
Psp6I	CCWGG	1 cut(s)	298
PspEI	GGTNACC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	199, 789
PspPI	GGNCC	2 cut(s)	787, 800
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	2 cut(s)	512, 668
RsaNI	GTAC	2 cut(s)	511, 667
RseI	CAYNNNNRTG	3 cut(s)	363, 563, 916
SacII	CCGCGG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	900
SatI	GCNGC	5 cut(s)	107, 110, 282, 293, 586
Sau3AI	GATC	2 cut(s)	197, 638
Sau96I	GGNCC	2 cut(s)	787, 800
SchI	GAGTC	2 cut(s)	299, 766
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	9 cut(s)	163, 186, 235, 294, 328, 387, 480, 864, 899
SfaNI	GCATC	1 cut(s)	254
Sfr303I	CCGCGG	1 cut(s)	110
SfuI	TTCGAA	1 cut(s)	155
SgrBI	CCGCGG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	787, 800
SmiMI	CAYNNNNRTG	3 cut(s)	363, 563, 916
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	2 cut(s)	55, 470
SsiI	CCGC	2 cut(s)	107, 109
SspMI	CTAG	3 cut(s)	23, 548, 894
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	541, 700
TaqI	TCGA	3 cut(s)	137, 155, 173
TasI	AATT	2 cut(s)	55, 470
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	2 cut(s)	109, 112
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	900
Tru9I	TTAA	1 cut(s)	900
TscAI	CASTG	4 cut(s)	283, 546, 570, 751
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	281, 292, 585
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	5 cut(s)	68, 384, 423, 693, 750
TspRI	CASTG	4 cut(s)	283, 546, 570, 751
Van91I	CCANNNNNTGG	1 cut(s)	522
VpaK11BI	GGWCC	2 cut(s)	787, 800
XapI	RAATTY	2 cut(s)	55, 470
XceI	RCATGY	1 cut(s)	736
XspI	CTAG	3 cut(s)	23, 548, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.