Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8312191.1

Orthogroup ID

OG0016597

Physical Location & Seq

Genomic Coordinates Reverse (-)

138 .. 845

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8312191.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgcatggatttttttgctttcagttgtctaatgcagatgttttcccccacaatcatgatgaaatagacatagagctattaggccatgacaagagaaatgaatgggtcatccaaacaaatgtatacgcaaatgggagtgtcaacacaggaagagaggagaaattttacctctggtttgacccaacaacacagcaccatcagtacaccatcatctggaacaaccatcacacagtgtttctagtggacaacatcccagtgagagagtttcagcatagcagcacattctacccatcaaaaccgatgtctgtttacgcaacaatatgggatggatcagagtgggcaacacatggaggaaagtacccagtcaactataagaatgcaccatttacagtttcattagcagaaatggagatgagtggttgcatatccaatcccagtgcttctccttcttcatgttctaagactccttcaagtttggacccagttgaaggaccagagtttgtgaagttgactaaccaacaagttagtgctatggattgggcaagaaggaagctaatgttttactcttattgtaaagatacatctaggtttaaagttatgccaccagagtgcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0031224 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

205

Amino Acids

23.66

Weight (kDa)

6.03

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10550
fragaria_vesca	FvH4_4g34630
malus_domestica	MD16G1091200.v1.1
prunus_persica	Prupe.1G255100_v2.0.a1
pyrus_communis	pycom16g07790
rosa_chinensis	RchiOBHm_Chr4g0443991
rosa_laevigata	RLG00000005869
rosa_multiflora	Rmu_co8312191.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384560
rosa_rugosa	Rorug04G0348900
rosa_samantha	Rh4AG409600 Rh4BG420700 Rh4DG415700
rosa_wichuraiana	Rw4G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	161
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	203, 359
AfiI	CCNNNNNNNGG	2 cut(s)	213, 488
AgsI	TTSAA	2 cut(s)	471, 488
AleI	CACNNNNGTG	1 cut(s)	607
AluBI	AGCT	2 cut(s)	76, 553
AluI	AGCT	2 cut(s)	76, 553
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspS9I	GGNCC	2 cut(s)	478, 491
AvaII	GGWCC	2 cut(s)	478, 491
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	5 cut(s)	204, 215, 231, 298, 320
BfaI	CTAG	2 cut(s)	239, 585
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme18I	GGWCC	2 cut(s)	478, 491
BmgT120I	GGNCC	2 cut(s)	478, 491
BmiI	GGNNCC	1 cut(s)	480
BmrI	ACTGGG	4 cut(s)	248, 356, 429, 476
BmuI	ACTGGG	4 cut(s)	248, 356, 429, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 488
Bse1I	ACTGG	4 cut(s)	254, 362, 435, 482
BseGI	GGATG	3 cut(s)	108, 249, 331
BseLI	CCNNNNNNNGG	2 cut(s)	213, 488
BseNI	ACTGG	4 cut(s)	254, 362, 435, 482
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	288
BshFI	GGCC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	213, 488
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	337
BsrI	ACTGG	4 cut(s)	254, 362, 435, 482
BssMI	GATC	1 cut(s)	329
BssNAI	GTATAC	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	232, 391
Bst6I	CTCTTC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	3 cut(s)	108, 249, 331
BstKTI	GATC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	108, 249, 331
BtsIMutI	CAGTG	3 cut(s)	237, 261, 442
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	478, 491
Csp6I	GTAC	2 cut(s)	202, 358
CviAII	CATG	5 cut(s)	5, 56, 86, 347, 453
CviJI	RGCY	3 cut(s)	76, 84, 553
CviKI_1	RGCY	3 cut(s)	76, 84, 553
CviQI	GTAC	2 cut(s)	202, 358
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DraI	TTTAAA	1 cut(s)	592
DraIII	CACNNNGTG	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	478, 491
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 59, 89, 350, 456
FatI	CATG	5 cut(s)	4, 55, 85, 346, 452
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	3 cut(s)	95, 236, 338
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	2 cut(s)	239, 585
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	8, 59, 89, 350, 456
HincII	GTYRAC	3 cut(s)	142, 367, 510
HindII	GTYRAC	3 cut(s)	142, 367, 510
HinfI	GANTC	1 cut(s)	463
Hpy166II	GTNNAC	7 cut(s)	124, 142, 204, 244, 310, 367, 510
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	56, 214
Hpy8I	GTNNAC	7 cut(s)	124, 142, 204, 244, 310, 367, 510
HpyAV	CCTTC	4 cut(s)	456, 477, 482, 540
HpyCH4III	ACNGT	2 cut(s)	232, 391
HpyCH4V	TGCA	5 cut(s)	4, 35, 380, 423, 612
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	5 cut(s)	8, 59, 89, 350, 456
Kzo9I	GATC	1 cut(s)	329
LpnPI	CCDG	8 cut(s)	132, 157, 199, 267, 375, 448, 495, 507
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	2 cut(s)	239, 585
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	2 cut(s)	162, 441
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	3 cut(s)	148, 179, 344
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	3 cut(s)	54, 254, 607
Mva1269I	GAATGC	1 cut(s)	382
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	5 cut(s)	8, 59, 89, 350, 456
NlaIV	GGNNCC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	607
PagI	TCATGA	1 cut(s)	55
PctI	GAATGC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	2 cut(s)	478, 491
RsaI	GTAC	2 cut(s)	203, 359
RsaNI	GTAC	2 cut(s)	202, 358
RseI	CAYNNNNRTG	3 cut(s)	54, 254, 607
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	2 cut(s)	478, 491
SchI	GAGTC	1 cut(s)	457
SetI	ASST	4 cut(s)	78, 171, 555, 590
SinI	GGWCC	2 cut(s)	478, 491
SmiMI	CAYNNNNRTG	3 cut(s)	54, 254, 607
Sse9I	AATT	1 cut(s)	161
SspMI	CTAG	2 cut(s)	239, 585
TaaI	ACNGT	2 cut(s)	232, 391
TasI	AATT	1 cut(s)	161
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	237, 261, 442
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	4 cut(s)	75, 114, 384, 441
TspRI	CASTG	3 cut(s)	237, 261, 442
Van91I	CCANNNNNTGG	1 cut(s)	213
VpaK11BI	GGWCC	2 cut(s)	478, 491
XapI	RAATTY	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	239, 585
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.