Rroxscaffold_5G00384560

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
63878466 .. 63879911
1446 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00384560.1

Sequence Viewer

Length: 891 bp
ATGGCATTTTTGCAAGAAAAACTAGTCTTCTTGTGTCTTCTGGTCTTGTGTATGAATTCAGTATTGGCCTCTTCACGCAACAGACGCTACACAAGTCCAAGCGTGCCGCGGCTAACTGATGTTTTCCCTCATGTCTCGATTACTAATGTGTTTTCGAAAGCTTTTGGAGGCTCGAATGTTCAGGTGACTGGTAATGGATCCATGGCCACTCTTGCTCTTGACAAAATCTCAGGTTCTGGTTTGGCATCAGTAAAAAAATATCACTATGGATTCTTCAGTGCTGCTATCAAGCTGCCTCCTGGAGACTCTTCTGGAGTTGTGGTAGCTTTCTATGTAAACATAGAGCTATTAGGCCATGACAAGAGAAATGAATGGGTCATCCAAACAAATGTGTATGCAAATGGGAGTGTCAACACAGGAAGAGAGGAGAAATTTTACCTCTGGTTTGACCCAACAACACAGCACCATCAGTACACCATCATCTGGAACAACCATCACACAGTGTTTCTAGTGGACAACATCCCAGTGAGAGAGTTTCAGCATGGCAGCACATTCTACCCATCAAAACCGATGTCTGTTTACGCAACAATATGGGATGGATCAGAGTGGGCAACACATGGAGGAAAGTACCCAGTCAACTATAAGAACGCACCATTTACAGTTTCATTTGCAGAAATGGAGATGAGTGGTTGCATATCCAATCCCAGTGCTTCTCCTTCTTCATGTTCTAAGAGTACTCCTTCAAGTTTGGACCCAGTTGAAGGACCAGAGTTTGTGAAGTTGACTAACCAACAAGTTAGTGCTATGGATTGGGCAAGAAGGAAGCTAATGTTTTACTCTTATTGTAAAGATACATCTAGGTTTAAAGTTATGCCACCAGAGTGCAGATAG

Protein Analysis

296

Amino Acids

33.1

Weight (kDa)

8.8

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 52 - 215 1.4e-42 Glycosyl hydrolases family 16
XET_C PF06955 260 - 295 4e-14 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10550
fragaria_vesca FvH4_4g34630
malus_domestica MD16G1091200.v1.1
prunus_persica Prupe.1G255100_v2.0.a1
pyrus_communis pycom16g07790
rosa_chinensis RchiOBHm_Chr4g0443991
rosa_laevigata RLG00000005869
rosa_multiflora Rmu_co8312191.1_g000001
rosa_roxburghii Rroxscaffold_5G00384560
rosa_rugosa Rorug04G0348900
rosa_samantha Rh4AG409600 Rh4BG420700 Rh4DG415700
rosa_wichuraiana Rw4G035180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 483
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 107, 109
AclWI GGATC 3 cut(s) 192, 205, 607
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 55, 431
AcuI CTGAAG 1 cut(s) 259
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 3 cut(s) 473, 629, 736
AfiI CCNNNNNNNGG 2 cut(s) 483, 761
AgsI TTSAA 2 cut(s) 744, 761
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AleI CACNNNNGTG 1 cut(s) 880
AluBI AGCT 5 cut(s) 161, 292, 326, 346, 826
AluI AGCT 5 cut(s) 161, 292, 326, 346, 826
Alw26I GTCTC 2 cut(s) 139, 297
AlwI GGATC 3 cut(s) 192, 205, 607
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 3 cut(s) 66, 204, 352
ApeKI GCWGC 3 cut(s) 281, 292, 546
ApoI RAATTY 2 cut(s) 55, 431
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AspS9I GGNCC 2 cut(s) 751, 764
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 155
AvaII GGWCC 2 cut(s) 751, 764
BalI TGGCCA 1 cut(s) 206
BamHI GGATCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 19, 29
BbvI GCAGC 3 cut(s) 268, 279, 558
BccI CCATC 5 cut(s) 474, 485, 501, 568, 590
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 139, 297
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 23, 509, 858
BisI GCNGC 5 cut(s) 107, 110, 282, 293, 547
BlsI GCNGC 5 cut(s) 108, 111, 283, 294, 548
BmcAI AGTACT 1 cut(s) 736
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 2 cut(s) 751, 764
BmgT120I GGNCC 2 cut(s) 751, 764
BmiI GGNNCC 2 cut(s) 199, 753
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 4 cut(s) 518, 626, 699, 749
BmsI GCATC 1 cut(s) 254
BmuI ACTGGG 4 cut(s) 518, 626, 699, 749
BpiI GAAGAC 2 cut(s) 19, 29
BpmI CTGGAG 2 cut(s) 321, 333
Bpu14I TTCGAA 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 107, 201
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 761
Bse1I ACTGG 5 cut(s) 193, 524, 632, 705, 755
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 107, 201
BseGI GGATG 3 cut(s) 378, 519, 601
BseLI CCNNNNNNNGG 2 cut(s) 483, 761
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 5 cut(s) 193, 524, 632, 705, 755
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 3 cut(s) 268, 279, 558
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 3 cut(s) 68, 206, 354
BslI CCNNNNNNNGG 2 cut(s) 483, 761
BsmAI GTCTC 2 cut(s) 139, 297
BsnI GGCC 3 cut(s) 68, 206, 354
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 197, 599
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 107, 109
BspANI GGCC 3 cut(s) 68, 206, 354
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 199, 753
BspPI GGATC 3 cut(s) 192, 205, 607
BspT104I TTCGAA 1 cut(s) 155
BsrI ACTGG 5 cut(s) 193, 524, 632, 705, 755
BssECI CCNNGG 2 cut(s) 107, 201
BssMI GATC 2 cut(s) 197, 599
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 502, 661
Bst6I CTCTTC 3 cut(s) 76, 313, 415
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 229, 729
BstDSI CCRYGG 2 cut(s) 107, 201
BstF5I GGATG 3 cut(s) 378, 519, 601
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 2 cut(s) 200, 602
BstMAI GTCTC 2 cut(s) 139, 297
BstMBI GATC 2 cut(s) 197, 599
BstMWI GCNNNNNNNGC 2 cut(s) 84, 212
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 268, 279, 558
BstV2I GAAGAC 2 cut(s) 19, 29
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 68, 206, 354
BtgI CCRYGG 2 cut(s) 107, 201
BtsCI GGATG 3 cut(s) 378, 519, 601
BtsIMutI CAGTG 4 cut(s) 283, 507, 531, 712
Cac8I GCNNGC 1 cut(s) 104
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 751, 764
Cfr42I CCGCGG 1 cut(s) 110
CseI GACGC 1 cut(s) 93
Csp6I GTAC 3 cut(s) 472, 628, 735
CviAII CATG 6 cut(s) 131, 202, 356, 542, 617, 723
CviQI GTAC 3 cut(s) 472, 628, 735
DdeI CTNAG 2 cut(s) 229, 729
DpnI GATC 2 cut(s) 199, 601
DpnII GATC 2 cut(s) 197, 599
DraI TTTAAA 1 cut(s) 865
DraIII CACNNNGTG 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 3 cut(s) 76, 313, 415
EarI CTCTTC 3 cut(s) 76, 313, 415
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 751, 764
Eco57I CTGAAG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 6 cut(s) 134, 205, 359, 545, 620, 726
FatI CATG 6 cut(s) 130, 201, 355, 541, 616, 722
Fnu4HI GCNGC 5 cut(s) 107, 110, 282, 293, 547
FokI GGATG 3 cut(s) 365, 506, 608
Fsp4HI GCNGC 5 cut(s) 107, 110, 282, 293, 547
FspBI CTAG 3 cut(s) 23, 509, 858
GluI GCNGC 5 cut(s) 107, 110, 282, 293, 547
GsuI CTGGAG 2 cut(s) 321, 333
HaeIII GGCC 3 cut(s) 68, 206, 354
HgaI GACGC 1 cut(s) 93
Hin1II CATG 6 cut(s) 134, 205, 359, 545, 620, 726
HincII GTYRAC 3 cut(s) 412, 637, 783
HindII GTYRAC 3 cut(s) 412, 637, 783
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 270, 305
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 7 cut(s) 337, 412, 474, 514, 580, 637, 783
Hpy188I TCNGA 1 cut(s) 604
Hpy188III TCNNGA 4 cut(s) 136, 218, 312, 484
Hpy8I GTNNAC 7 cut(s) 337, 412, 474, 514, 580, 637, 783
HpyAV CCTTC 4 cut(s) 726, 750, 755, 813
HpyCH4III ACNGT 2 cut(s) 502, 661
HpyCH4V TGCA 5 cut(s) 13, 398, 671, 693, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 212
HpyF3I CTNAG 2 cut(s) 229, 729
Hsp92II CATG 6 cut(s) 134, 205, 359, 545, 620, 726
KspI CCGCGG 1 cut(s) 110
Kzo9I GATC 2 cut(s) 197, 599
Lsp1109I GCAGC 3 cut(s) 268, 279, 558
LweI GCATC 1 cut(s) 254
MaeI CTAG 3 cut(s) 23, 509, 858
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 199, 601
MboI GATC 2 cut(s) 197, 599
MboII GAAGA 7 cut(s) 19, 29, 63, 265, 300, 432, 711
MflI RGATCY 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 2 cut(s) 55, 431
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 7 cut(s) 79, 138, 161, 306, 418, 449, 614
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 1 cut(s) 864
MslI CAYNNNNRTG 2 cut(s) 524, 880
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 84, 212
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 197, 599
NlaIII CATG 6 cut(s) 134, 205, 359, 545, 620, 726
NlaIV GGNNCC 2 cut(s) 199, 753
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 880
PfeI GAWTC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 5 cut(s) 108, 111, 283, 294, 548
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 199, 753
PspPI GGNCC 2 cut(s) 751, 764
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 3 cut(s) 473, 629, 736
RsaNI GTAC 3 cut(s) 472, 628, 735
RseI CAYNNNNRTG 2 cut(s) 524, 880
SacII CCGCGG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 864
SatI GCNGC 5 cut(s) 107, 110, 282, 293, 547
Sau3AI GATC 2 cut(s) 197, 599
Sau96I GGNCC 2 cut(s) 751, 764
ScaI AGTACT 1 cut(s) 736
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 300
SetI ASST 9 cut(s) 163, 186, 235, 294, 328, 348, 441, 828, 863
SfaNI GCATC 1 cut(s) 254
Sfr303I CCGCGG 1 cut(s) 110
SfuI TTCGAA 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 110
SinI GGWCC 2 cut(s) 751, 764
SmiMI CAYNNNNRTG 2 cut(s) 524, 880
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 2 cut(s) 55, 431
SsiI CCGC 2 cut(s) 107, 109
SspMI CTAG 3 cut(s) 23, 509, 858
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 502, 661
TaqI TCGA 3 cut(s) 137, 155, 173
TasI AATT 2 cut(s) 55, 431
TatI WGTACW 2 cut(s) 471, 734
TauI GCSGC 2 cut(s) 109, 112
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 4 cut(s) 283, 507, 531, 712
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 281, 292, 546
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 68, 384, 654, 711
TspRI CASTG 4 cut(s) 283, 507, 531, 712
Van91I CCANNNNNTGG 1 cut(s) 483
VpaK11BI GGWCC 2 cut(s) 751, 764
XapI RAATTY 2 cut(s) 55, 431
XspI CTAG 3 cut(s) 23, 509, 858
ZrmI AGTACT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.