Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016597

Physical Location & Seq

Genomic Coordinates Reverse (-)

6334488 .. 6336158

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1091200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCATTCTTCCAAGGAAAAATACACTTCTGGTGTGTTTTGATCTTGTGTTGTATGTCTTTGTTGGTTTCCTCCGACAGGCGCTACACGAGTCCTAGCGTTCCTCGTTTAACCGACGTTTTTCCCCGTGTCTCGATTGATAGAGGGTTTTCCAAAGTTTTTGGAGGCTCAAATATTCAGGTCATCAATGGATCCATGGCCACTCTTGCTCTTGACAAAAACTCAGGATCTGGATTGGCATCGGTAAACAAATTTCACTATGGATTCTTCAGTGCTGCTATCAAGCTGCCTGCTGGTCTCACTTCTGGGGTTGTAGTGGCTTTCTATCTGTCTAATGCAGATGTGTTCCCTCACAATCATGATGAGATAGACATAGAACTCTTGGGCCACGATAAAAGAAATGATTGGGTCATCCAAACAAATATATATGCAAATGGAAGCGTAAACACAGGAAGAGAGGAGAAATTCTATCTCTGGTTTGACCCAACACTACAGCACCATCAGTACAGCATCATCTGGAACAACCATCATACAGTGTTTCTAGTGGACAACGTCCCAGTGAGGGAGTTTCAGCACAGCAGTTCATTTTTCCCATCAAAACCCATGTCAGTTTACGCAACAATATGGGATGCATCAGAGTGGGCAACTCATGGAGGAAAATATCCAGTTAACTATAAGTATGCACCATTTAGGGTTTCGTTTGCAGAGATGGAGATGAGTGGCTGCATATCCAATCCCACCGGAACAGTGACGTCGTGTGCTCGGAGCAATCCCTCGAGCGTGGACCCCGTCGAGGGGCCGGAGTTTGTTAAGTTGTCTAGCCAACAAAGTGGCGCAATGGATTGGGCAAGAAGTAAACTCATGTTTTACTCTTACTGTAAAGATACAAAAAGGTTTAAAGTTATGCCACCAGAGTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0031224 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

308

Amino Acids

34.53

Weight (kDa)

8.11

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	49 - 226	5.4e-53	Glycosyl hydrolases family 16
XET_C	PF06955	271 - 306	7.2e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10550
fragaria_vesca	FvH4_4g34630
malus_domestica	MD16G1091200.v1.1
prunus_persica	Prupe.1G255100_v2.0.a1
pyrus_communis	pycom16g07790
rosa_chinensis	RchiOBHm_Chr4g0443991
rosa_laevigata	RLG00000005869
rosa_multiflora	Rmu_co8312191.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384560
rosa_rugosa	Rorug04G0348900
rosa_samantha	Rh4AG409600 Rh4BG420700 Rh4DG415700
rosa_wichuraiana	Rw4G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	755
AclWI	GGATC	3 cut(s)	186, 199, 235
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	2 cut(s)	251, 464
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	752
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	5 cut(s)	78, 562, 793, 794, 795
AleI	CACNNNNGTG	1 cut(s)	913
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	2 cut(s)	136, 302
AlwI	GGATC	3 cut(s)	186, 199, 235
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	775
AoxI	GGCC	3 cut(s)	198, 385, 797
ApeKI	GCWGC	3 cut(s)	275, 286, 723
ApoI	RAATTY	2 cut(s)	251, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspLEI	GCGC	2 cut(s)	84, 836
AspS9I	GGNCC	3 cut(s)	385, 784, 797
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	3 cut(s)	262, 273, 710
BccI	CCATC	4 cut(s)	507, 534, 601, 703
BcoDI	GTCTC	2 cut(s)	136, 302
BfaI	CTAG	3 cut(s)	96, 542, 819
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	3 cut(s)	276, 287, 724
BlsI	GCNGC	3 cut(s)	277, 288, 725
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	775
BmgT120I	GGNCC	3 cut(s)	385, 784, 797
BmiI	GGNNCC	3 cut(s)	193, 786, 798
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	4 cut(s)	248, 519, 619, 641
BmuI	ACTGGG	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	752
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	13, 195
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 562, 793, 794, 795
Bse1I	ACTGG	2 cut(s)	557, 665
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	13, 195
BseGI	GGATG	2 cut(s)	411, 634
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	5 cut(s)	78, 562, 793, 794, 795
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	557, 665
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	262, 273, 710
BshFI	GGCC	3 cut(s)	200, 387, 799
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	775
BsiSI	CCGG	2 cut(s)	741, 800
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	5 cut(s)	78, 562, 793, 794, 795
BsmAI	GTCTC	2 cut(s)	136, 302
BsmFI	GGGAC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	200, 387, 799
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	3 cut(s)	42, 191, 227
Bsp19I	CCATGG	1 cut(s)	195
BspANI	GGCC	3 cut(s)	200, 387, 799
BspCNI	CTCAG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	193, 786, 798
BspPI	GGATC	3 cut(s)	186, 199, 235
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	2 cut(s)	557, 665
BssECI	CCNNGG	2 cut(s)	13, 195
BssMI	GATC	3 cut(s)	42, 191, 227
BssNI	GRCGYC	1 cut(s)	752
BssSI	CACGAG	1 cut(s)	88
BssT1I	CCWWGG	2 cut(s)	13, 195
Bst2BI	CACGAG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	535, 748, 878
Bst6I	CTCTTC	1 cut(s)	448
BstACI	GRCGYC	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	411, 634
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 836
BstKTI	GATC	3 cut(s)	45, 194, 230
BstMAI	GTCTC	2 cut(s)	136, 302
BstMBI	GATC	3 cut(s)	42, 191, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	262, 273, 710
BstX2I	RGATCY	2 cut(s)	191, 227
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	2 cut(s)	191, 227
BsuRI	GGCC	3 cut(s)	200, 387, 799
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	411, 634
BtsIMutI	CAGTG	4 cut(s)	277, 540, 564, 753
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	84, 836
Cfr13I	GGNCC	3 cut(s)	385, 784, 797
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	5 cut(s)	196, 359, 604, 650, 862
CviJI	RGCY	8 cut(s)	168, 200, 286, 320, 387, 723, 799, 822
CviKI_1	RGCY	8 cut(s)	168, 200, 286, 320, 387, 723, 799, 822
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	3 cut(s)	44, 193, 229
DpnII	GATC	3 cut(s)	42, 191, 227
DraI	TTTAAA	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	13, 195
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	775
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoT14I	CCWWGG	2 cut(s)	13, 195
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	13, 195
FaeI	CATG	5 cut(s)	199, 362, 607, 653, 865
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	5 cut(s)	195, 358, 603, 649, 861
Fnu4HI	GCNGC	3 cut(s)	276, 287, 724
FokI	GGATG	2 cut(s)	398, 641
Fsp4HI	GCNGC	3 cut(s)	276, 287, 724
FspBI	CTAG	3 cut(s)	96, 542, 819
GlaI	GCGC	2 cut(s)	83, 835
GluI	GCNGC	3 cut(s)	276, 287, 724
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	200, 387, 799
HapII	CCGG	2 cut(s)	741, 800
HhaI	GCGC	2 cut(s)	84, 836
Hin1I	GRCGYC	1 cut(s)	752
Hin1II	CATG	5 cut(s)	199, 362, 607, 653, 865
Hin6I	GCGC	2 cut(s)	82, 834
HinP1I	GCGC	2 cut(s)	82, 834
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	2 cut(s)	91, 264
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	2 cut(s)	741, 800
Hpy166II	GTNNAC	7 cut(s)	247, 445, 547, 613, 670, 784, 857
Hpy188I	TCNGA	3 cut(s)	76, 637, 765
Hpy188III	TCNNGA	6 cut(s)	133, 212, 225, 231, 359, 517
Hpy8I	GTNNAC	7 cut(s)	247, 445, 547, 613, 670, 784, 857
Hpy99I	CGWCG	3 cut(s)	119, 757, 794
HpyCH4III	ACNGT	3 cut(s)	535, 748, 878
HpyCH4IV	ACGT	3 cut(s)	117, 552, 752
HpyCH4V	TGCA	7 cut(s)	338, 431, 632, 683, 704, 726, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	3 cut(s)	117, 552, 752
Hsp92I	GRCGYC	1 cut(s)	752
Hsp92II	CATG	5 cut(s)	199, 362, 607, 653, 865
HspAI	GCGC	2 cut(s)	82, 834
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	3 cut(s)	42, 191, 227
LmnI	GCTCC	1 cut(s)	765
Lsp1109I	GCAGC	3 cut(s)	262, 273, 710
LweI	GCATC	4 cut(s)	248, 519, 619, 641
MaeI	CTAG	3 cut(s)	96, 542, 819
MaeII	ACGT	3 cut(s)	117, 552, 752
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	3 cut(s)	44, 193, 229
MboI	GATC	3 cut(s)	42, 191, 227
MboII	GAAGA	2 cut(s)	259, 465
MflI	RGATCY	2 cut(s)	191, 227
MhlI	GDGCHC	1 cut(s)	763
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	251, 464
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	634
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	4 cut(s)	110, 669, 810, 897
MslI	CAYNNNNRTG	3 cut(s)	357, 637, 913
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	2 cut(s)	741, 800
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	42, 191, 227
NlaIII	CATG	5 cut(s)	199, 362, 607, 653, 865
NlaIV	GGNNCC	3 cut(s)	193, 786, 798
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	634
OliI	CACNNNNGTG	1 cut(s)	913
PaeR7I	CTCGAG	1 cut(s)	775
PagI	TCATGA	1 cut(s)	358
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	264
PflFI	GACNNNGTC	2 cut(s)	551, 788
PkrI	GCNGC	3 cut(s)	277, 288, 725
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PspN4I	GGNNCC	3 cut(s)	193, 786, 798
PspPI	GGNCC	3 cut(s)	385, 784, 797
PspXI	VCTCGAGB	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	191, 227
PsyI	GACNNNGTC	2 cut(s)	551, 788
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	3 cut(s)	357, 637, 913
SaqAI	TTAA	4 cut(s)	110, 669, 810, 897
SatI	GCNGC	3 cut(s)	276, 287, 724
Sau3AI	GATC	3 cut(s)	42, 191, 227
Sau96I	GGNCC	3 cut(s)	385, 784, 797
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	763
SetI	ASST	6 cut(s)	120, 183, 288, 555, 755, 896
SfaNI	GCATC	4 cut(s)	248, 519, 619, 641
SfcI	CTRYAG	1 cut(s)	491
Sfr274I	CTCGAG	1 cut(s)	775
SinI	GGWCC	1 cut(s)	784
SlaI	CTCGAG	1 cut(s)	775
SmiMI	CAYNNNNRTG	3 cut(s)	357, 637, 913
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	2 cut(s)	251, 464
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	3 cut(s)	96, 542, 819
StyI	CCWWGG	2 cut(s)	13, 195
TaaI	ACNGT	3 cut(s)	535, 748, 878
TaiI	ACGT	3 cut(s)	120, 555, 755
TaqI	TCGA	3 cut(s)	134, 776, 792
TasI	AATT	2 cut(s)	251, 464
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	4 cut(s)	110, 669, 810, 897
Tru9I	TTAA	4 cut(s)	110, 669, 810, 897
TscAI	CASTG	4 cut(s)	277, 540, 564, 753
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	275, 286, 723
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	4 cut(s)	277, 540, 564, 753
Tth111I	GACNNNGTC	2 cut(s)	551, 788
VpaK11BI	GGWCC	1 cut(s)	784
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	2 cut(s)	251, 464
XhoI	CTCGAG	1 cut(s)	775
XspI	CTAG	3 cut(s)	96, 542, 819
ZraI	GACGTC	1 cut(s)	753
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.