Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016597

Physical Location & Seq

Genomic Coordinates Forward (+)

26585985 .. 26587731

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G255100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCATTTTTGCAGGGAAAACTCCCCTGCTTTTGTGTTTTAATTTTGTGTATGGCAGTACTGGTTTCTTCACATAATAGATACTACACAAGCCCAAGCGTTCCACGTTTGACAGACGCTTTCCCTCGCGTACCAATTAGTAATGGGTTTTCAAAAGCTTTCGGAGGCTCAAACATTCAGGTGATCAATGGATCCATGGCCACTCTTGCTCTTGACAAGTCCTCAGGATCTGGATTGGCATCTGTAAACAAATATCACTATGGATTCTTCAGTGCTGCCATCAAGCTGCCTGCTGGTCTCACTTCTGGGGTTGTAGTGGCTTTCTATCTGTCTAATGCAGATGTTTTCCCTCACAATCATGATGAGATTGACATAGAGCTATTGGGCCATGATAAAAGAAATGATTGGGTCATTCAGACAAATGTATATGCAAATGGAAGTGTAAACACAGGAAGAGAAGAGAAGTTTTATCTCTGGTTTGACCCAACACAACAGCAGCATCAATACAGCATCATCTGGAACAACCATCATATAGTGTTTCTAGTGGACAATATCCCTGTAAGAGAGTTTCAGCATAGCGGTTCCTTTTTCCCTTCAAAACCCATGTCAGTTTATGCAACAATATGGGATGCCTCACAGTGGGCAACTCATGGAGGAAAATACCCAGTTAACTACAAATATGCACCGTTTCGAGTTTCGTTTGCAGAAATGGAAATGAGTGGCTGCATATCCAATCCCACAGGAACAGTGACTTCATGTTCTAAGAACACTCCTTCAAGCTTGGACCCAATTGAAGGACCAGAGTTTGTTAAGTTGTCTAACCAGCAAATTAGTGCTCTGGGTTGGGCAAGAAGTAAGCTAATGTTTTACTCTTACTGTAAAGATACATCCAGGTTTAAAGTCATGCCACCAGAGTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0031224 GO:0031226 GO:0040007 GO:0042545 GO:0042547 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

308

Amino Acids

34.24

Weight (kDa)

8.39

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10550
fragaria_vesca	FvH4_4g34630
malus_domestica	MD16G1091200.v1.1
prunus_persica	Prupe.1G255100_v2.0.a1
pyrus_communis	pycom16g07790
rosa_chinensis	RchiOBHm_Chr4g0443991
rosa_laevigata	RLG00000005869
rosa_multiflora	Rmu_co8312191.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384560
rosa_rugosa	Rorug04G0348900
rosa_samantha	Rh4AG409600 Rh4BG420700 Rh4DG415700
rosa_wichuraiana	Rw4G035180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	3 cut(s)	186, 199, 235
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	2 cut(s)	60, 132
AfiI	CCNNNNNNNGG	2 cut(s)	639, 794
AgsI	TTSAA	4 cut(s)	153, 597, 777, 794
AjnI	CCWGG	1 cut(s)	890
AleI	CACNNNNGTG	1 cut(s)	913
AluBI	AGCT	5 cut(s)	158, 286, 379, 780, 859
AluI	AGCT	5 cut(s)	158, 286, 379, 780, 859
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	3 cut(s)	186, 199, 235
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	198, 385
ApeKI	GCWGC	4 cut(s)	275, 286, 496, 723
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspS9I	GGNCC	3 cut(s)	385, 784, 797
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	784, 797
AxyI	CCTNAGG	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	4 cut(s)	262, 273, 508, 710
BccI	CCATC	2 cut(s)	287, 534
BciT130I	CCWGG	1 cut(s)	892
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	542
BisI	GCNGC	4 cut(s)	276, 287, 497, 724
BlsI	GCNGC	4 cut(s)	277, 288, 498, 725
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	892
Bme18I	GGWCC	2 cut(s)	784, 797
BmgT120I	GGNCC	3 cut(s)	385, 784, 797
BmiI	GGNNCC	3 cut(s)	193, 583, 786
BmrFI	CCNGG	1 cut(s)	892
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	4 cut(s)	248, 508, 519, 619
BmuI	ACTGGG	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	639, 794
Bse1I	ACTGG	2 cut(s)	66, 665
Bse21I	CCTNAGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	892
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	634, 887
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	639, 794
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	66, 665
BseXI	GCAGC	4 cut(s)	262, 273, 508, 710
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	200, 387
BsiHKAI	GWGCWC	1 cut(s)	838
BslI	CCNNNNNNNGG	2 cut(s)	639, 794
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	200, 387
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	838
Bsp143I	GATC	3 cut(s)	183, 191, 227
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	2 cut(s)	200, 387
BspCNI	CTCAG	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	193, 583, 786
BspPI	GGATC	3 cut(s)	186, 199, 235
BspTNI	GGTCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	66, 665
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	183, 191, 227
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	892
Bst4CI	ACNGT	4 cut(s)	639, 687, 748, 878
Bst6I	CTCTTC	2 cut(s)	448, 453
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	223, 762
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	634, 887
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	186, 194, 230
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	3 cut(s)	183, 191, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	890
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	262, 273, 508, 710
BstX2I	RGATCY	2 cut(s)	191, 227
BstYI	RGATCY	2 cut(s)	191, 227
Bsu36I	CCTNAGG	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	200, 387
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	634, 887
BtsIMutI	CAGTG	3 cut(s)	277, 644, 753
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	385, 784, 797
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	59, 131
CviAII	CATG	7 cut(s)	196, 359, 389, 604, 650, 756, 904
CviQI	GTAC	2 cut(s)	59, 131
DdeI	CTNAG	2 cut(s)	223, 762
DpnI	GATC	3 cut(s)	185, 193, 229
DpnII	GATC	3 cut(s)	183, 191, 227
DraI	TTTAAA	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	448, 453
EarI	CTCTTC	2 cut(s)	448, 453
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	784, 797
Eco57I	CTGAAG	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	890
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	7 cut(s)	199, 362, 392, 607, 653, 759, 907
FatI	CATG	7 cut(s)	195, 358, 388, 603, 649, 755, 903
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	276, 287, 497, 724
FokI	GGATG	2 cut(s)	641, 874
Fsp4HI	GCNGC	4 cut(s)	276, 287, 497, 724
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	4 cut(s)	276, 287, 497, 724
HaeIII	GGCC	2 cut(s)	200, 387
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	7 cut(s)	199, 362, 392, 607, 653, 759, 907
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	2 cut(s)	156, 778
HinfI	GANTC	1 cut(s)	264
HpaI	GTTAAC	1 cut(s)	670
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	4 cut(s)	247, 445, 547, 670
Hpy188I	TCNGA	2 cut(s)	164, 417
Hpy188III	TCNNGA	5 cut(s)	212, 225, 231, 359, 517
Hpy8I	GTNNAC	4 cut(s)	247, 445, 547, 670
HpyAV	CCTTC	3 cut(s)	603, 783, 788
HpyCH4III	ACNGT	4 cut(s)	639, 687, 748, 878
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	8 cut(s)	13, 338, 431, 617, 683, 704, 726, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	223, 762
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	7 cut(s)	199, 362, 392, 607, 653, 759, 907
Ksp22I	TGATCA	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	3 cut(s)	183, 191, 227
Lsp1109I	GCAGC	4 cut(s)	262, 273, 508, 710
LweI	GCATC	4 cut(s)	248, 508, 519, 619
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	3 cut(s)	185, 193, 229
MboI	GATC	3 cut(s)	183, 191, 227
MboII	GAAGA	4 cut(s)	60, 259, 465, 470
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	2 cut(s)	191, 227
MhlI	GDGCHC	1 cut(s)	838
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	4 cut(s)	42, 135, 789, 828
MluNI	TGGCCA	1 cut(s)	200
MnlI	CCTC	6 cut(s)	135, 158, 232, 360, 643, 647
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	4 cut(s)	41, 669, 810, 897
MslI	CAYNNNNRTG	3 cut(s)	179, 357, 913
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	892
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	892
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	183, 191, 227
NlaIII	CATG	7 cut(s)	199, 362, 392, 607, 653, 759, 907
NlaIV	GGNNCC	3 cut(s)	193, 583, 786
NmuCI	GTSAC	1 cut(s)	748
OliI	CACNNNNGTG	1 cut(s)	913
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	4 cut(s)	277, 288, 498, 725
Psp6I	CCWGG	1 cut(s)	890
PspGI	CCWGG	1 cut(s)	890
PspN4I	GGNNCC	3 cut(s)	193, 583, 786
PspPI	GGNCC	3 cut(s)	385, 784, 797
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	191, 227
RsaI	GTAC	2 cut(s)	60, 132
RsaNI	GTAC	2 cut(s)	59, 131
RseI	CAYNNNNRTG	3 cut(s)	179, 357, 913
SaqAI	TTAA	4 cut(s)	41, 669, 810, 897
SatI	GCNGC	4 cut(s)	276, 287, 497, 724
Sau3AI	GATC	3 cut(s)	183, 191, 227
Sau96I	GGNCC	3 cut(s)	385, 784, 797
ScaI	AGTACT	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	892
SduI	GDGCHC	1 cut(s)	838
SetI	ASST	8 cut(s)	109, 160, 183, 288, 381, 782, 861, 896
SfaNI	GCATC	4 cut(s)	248, 508, 519, 619
SinI	GGWCC	2 cut(s)	784, 797
SmiMI	CAYNNNNRTG	3 cut(s)	179, 357, 913
Sse9I	AATT	4 cut(s)	42, 135, 789, 828
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	890
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	4 cut(s)	639, 687, 748, 878
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	691
TasI	AATT	4 cut(s)	42, 135, 789, 828
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	4 cut(s)	41, 669, 810, 897
Tru9I	TTAA	4 cut(s)	41, 669, 810, 897
TscAI	CASTG	3 cut(s)	277, 644, 753
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	4 cut(s)	275, 286, 496, 723
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	277, 644, 753
VpaK11BI	GGWCC	2 cut(s)	784, 797
XspI	CTAG	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.