AT1G10610
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016032
Physical Location & Seq
Forward (+)
3506186 .. 3509006
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10610.2

Sequence Viewer

Length: 1326 bp
ATGATGATGATGAGAGGTGGTGAGAGAGTGAAGGAGTTTCTTCGACCCTTTGTCGATTCCAGAACTTGGGACTTATGTGTTATCTGGAAACTCGGTGATGATCCTTCTAGGTTTATTGAATGGGTGGGATGCTGCTGCAGTGGTTGTTATATTGATAAGAATATAAAGCTTGAAAACTCAGAAGAAGGAGGAACTGGGAGAAAAAAGAAGGCTTCTTTCTGTAGAGATGACCACAACAAGCATCGTATAAGAACCTTAGCTTGTGAAGCGCTTTCTCGTTTTCCTCTCTTCATGCCTCTCTATCCCGGGATTCATGGAGAAGTAGTGATGTCAAAATCTCCAAAGTGGTTGGTTAATTCAGGATCTAAAATGGAAATGTTCAGCACTCGTGTTCTTGTTCCTGTGAGTGATGGTCTCGTTGAGCTGTTCGCTTTCGATATGAGACCGTTTGATGAAAGCATGGTGCATTTGATCATGTCGCGTTGTACCACCTTCTTTGAACCATTCCCTGAACAAAGGCTGCAGTTCAGGATCATTCCCCGAGCAGAGGAATCTATGAGTAGCGGTGTGAATCTCAGCGTTGAGGGCGGCGGATCATCAAGTGTTTCCAATCCCTCCAGTGAAACTCAGAATCTTTTCGGCAATTACCCGAATGCTAGTTGTGTGGAAATTCTCAGGGAGGAACAAACACCGTGTTTGATAATGAACAAGGAAAAGGATGTTGTGGTGCAAAATGCCAACGATTCCAAAGCTAATAAGAAGCTGCTTCCTACGGAAAACTTCAAATCAAAGAACCTTCATTCAGAGAGGAAAAGAAGAGAGAGAATTAATCAGGCCATGTATGGTCTAAGAGCCGTAGTCCCTAAAATCACAAAGTTGAACAAAATTGGAATTTTCAGTGATGCTGTTGATTACATCAATGAACTGCTAGTGGAGAAGCAGAAACTTGAAGATGAGCTTAAAGGAATCAATGAGATGGAATGCAAAGAAATCGCTGCAGAGGAACAATCTGCAATAGCTGATCCAGAAGCTGAAAGAGTTTCCTCTAAAAGCAACAAGAGAGTGAAGAAAAACGAGGTGAAAATTGAAGTCCACGAGACTGGTGAGCGAGATTTCTTGATTCGGGTTGTGCAGGAACATAAACAAGATGGATTCAAGAGGTTGATAGAAGCTGTAGATTTATGTGAACTTGAGATCATTGACGTCAATTTCACCAGACTCGATCTCACAGTCATGACCGTTCTCAATGTCAAGGCGAACAAAGACGGGATTGCATGTGGAATATTGAGAGATTTACTGCTCAAGATGATGATAACTTCAATATGA

Protein Analysis

441

Amino Acids

50.23

Weight (kDa)

6.7

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 7 - 129 3.8e-08 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 236 - 279 3.3e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10610 AT1G10610 AT1G10610
fragaria_vesca FvH4_4g34320
malus_domestica MD16G1093900.v1.1
prunus_persica Prupe.1G252600_v2.0.a1
pyrus_communis pycom16g07990
rosa_chinensis RchiOBHm_Chr4g0443741
rosa_laevigata RLG00000005894
rosa_roxburghii Rroxscaffold_5G00384310
rosa_samantha Rh4AG407100 Rh4BG418000 Rh4CG432200 Rh4DG413300
rosa_wichuraiana Rw4G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1206
AccB7I CCANNNNNTGG 1 cut(s) 66
AccII CGCG 1 cut(s) 481
AciI CCGC 3 cut(s) 564, 588, 591
AclWI GGATC 5 cut(s) 95, 370, 539, 601, 1016
AcsI RAATTY 2 cut(s) 669, 891
AcyI GRCGYC 1 cut(s) 1203
AfaI GTAC 1 cut(s) 487
AfeI AGCGCT 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 66, 547
AgsI TTSAA 9 cut(s) 119, 173, 500, 784, 880, 950, 1088, 1156, 1320
AhdI GACNNNNNGTC 1 cut(s) 50
AluBI AGCT 9 cut(s) 169, 260, 424, 752, 763, 958, 1019, 1031, 1172
AluI AGCT 9 cut(s) 169, 260, 424, 752, 763, 958, 1019, 1031, 1172
Alw26I GTCTC 3 cut(s) 419, 436, 1091
AlwI GGATC 5 cut(s) 95, 370, 539, 601, 1016
AlwNI CAGNNNCTG 1 cut(s) 1031
Ama87I CYCGRG 2 cut(s) 305, 540
Aor51HI AGCGCT 1 cut(s) 270
AoxI GGCC 1 cut(s) 834
ApeKI GCWGC 5 cut(s) 132, 135, 520, 763, 995
ApoI RAATTY 2 cut(s) 669, 891
AseI ATTAAT 1 cut(s) 828
Asp700I GAANNNNTTC 1 cut(s) 635
AspLEI GCGC 1 cut(s) 271
AsuC2I CCSGG 2 cut(s) 306, 307
AsuHPI GGTGA 5 cut(s) 32, 107, 1090, 1115, 1204
AvaI CYCGRG 2 cut(s) 305, 540
BauI CACGAG 2 cut(s) 387, 1094
BbvI GCAGC 5 cut(s) 119, 122, 507, 750, 982
BccI CCATC 3 cut(s) 404, 970, 1142
BceAI ACGGC 1 cut(s) 839
BcgI CGANNNNNNTGC 2 cut(s) 973, 1007
BclI TGATCA 1 cut(s) 471
BcnI CCSGG 2 cut(s) 306, 307
BcoDI GTCTC 3 cut(s) 419, 436, 1091
BfaI CTAG 3 cut(s) 108, 657, 929
BfmI CTRYAG 5 cut(s) 136, 220, 521, 996, 1173
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 6 cut(s) 133, 136, 521, 589, 764, 996
BlsI GCNGC 6 cut(s) 134, 137, 522, 590, 765, 997
Bme1390I CCNGG 2 cut(s) 306, 307
BmeRI GACNNNNNGTC 1 cut(s) 50
BmeT110I CYCGRG 2 cut(s) 305, 540
BmrFI CCNGG 2 cut(s) 306, 307
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 3 cut(s) 119, 250, 892
BmuI ACTGGG 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 601
Bpu10I CCTNAGC 1 cut(s) 256
BpuEI CTTGAG 2 cut(s) 1211, 1286
BpuMI CCSGG 2 cut(s) 306, 307
BsaHI GRCGYC 1 cut(s) 1203
BsaI GGTCTC 2 cut(s) 419, 436
BsaJI CCNNGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 547
Bse1I ACTGG 3 cut(s) 199, 618, 1105
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 134, 724
BseLI CCNNNNNNNGG 2 cut(s) 66, 547
BseMII CTCAG 4 cut(s) 192, 589, 641, 688
BseNI ACTGG 3 cut(s) 199, 618, 1105
BseXI GCAGC 5 cut(s) 119, 122, 507, 750, 982
BsgI GTGCAG 1 cut(s) 1151
Bsh1236I CGCG 1 cut(s) 481
BshFI GGCC 1 cut(s) 836
BsiHKCI CYCGRG 2 cut(s) 305, 540
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 83, 845
BslI CCNNNNNNNGG 2 cut(s) 66, 547
BsmAI GTCTC 3 cut(s) 419, 436, 1091
BsmFI GGGAC 2 cut(s) 83, 845
BsmI GAATGC 2 cut(s) 658, 986
BsnI GGCC 1 cut(s) 836
Bso31I GGTCTC 2 cut(s) 419, 436
BsoBI CYCGRG 2 cut(s) 305, 540
Bsp143I GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
BspACI CCGC 3 cut(s) 564, 588, 591
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 4 cut(s) 191, 588, 640, 687
BspFNI CGCG 1 cut(s) 481
BspHI TCATGA 1 cut(s) 1233
BspMAI CTGCAG 3 cut(s) 140, 525, 1000
BspPI GGATC 5 cut(s) 95, 370, 539, 601, 1016
BspTNI GGTCTC 2 cut(s) 419, 436
BsrI ACTGG 3 cut(s) 199, 618, 1105
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
BssNI GRCGYC 1 cut(s) 1203
BssSI CACGAG 2 cut(s) 387, 1094
Bst2BI CACGAG 2 cut(s) 387, 1094
Bst4CI ACNGT 4 cut(s) 447, 693, 1231, 1240
Bst6I CTCTTC 2 cut(s) 293, 811
BstACI GRCGYC 1 cut(s) 1203
BstDEI CTNAG 6 cut(s) 178, 256, 575, 627, 674, 848
BstF5I GGATG 2 cut(s) 134, 724
BstFNI CGCG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 8 cut(s) 103, 365, 474, 534, 596, 1024, 1197, 1225
BstMAI GTCTC 3 cut(s) 419, 436, 1091
BstMBI GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
BstMWI GCNNNNNNNGC 2 cut(s) 266, 585
BstNSI RCATGY 1 cut(s) 1278
BstSCI CCNGG 2 cut(s) 304, 305
BstSFI CTRYAG 5 cut(s) 136, 220, 521, 996, 1173
BstUI CGCG 1 cut(s) 481
BstV1I GCAGC 5 cut(s) 119, 122, 507, 750, 982
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 1100
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 1 cut(s) 836
BtsCI GGATG 2 cut(s) 134, 724
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 145, 625, 904
CaiI CAGNNNCTG 1 cut(s) 1031
CciI TCATGA 1 cut(s) 1233
CfoI GCGC 1 cut(s) 271
Cfr9I CCCGGG 1 cut(s) 305
Csp6I GTAC 1 cut(s) 486
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 7 cut(s) 292, 314, 460, 475, 838, 1234, 1275
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 6 cut(s) 178, 256, 575, 627, 674, 848
DpnI GATC 8 cut(s) 102, 364, 473, 533, 595, 1023, 1196, 1224
DpnII GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
DriI GACNNNNNGTC 1 cut(s) 50
Eam1104I CTCTTC 2 cut(s) 293, 811
Eam1105I GACNNNNNGTC 1 cut(s) 50
EarI CTCTTC 2 cut(s) 293, 811
EciI GGCGGA 1 cut(s) 606
Eco31I GGTCTC 2 cut(s) 419, 436
Eco47III AGCGCT 1 cut(s) 270
Eco88I CYCGRG 2 cut(s) 305, 540
FaeI CATG 7 cut(s) 295, 317, 463, 478, 841, 1237, 1278
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 2 cut(s) 83, 845
FatI CATG 7 cut(s) 291, 313, 459, 474, 837, 1233, 1274
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 6 cut(s) 133, 136, 521, 589, 764, 996
FokI GGATG 2 cut(s) 141, 731
Fsp4HI GCNGC 6 cut(s) 133, 136, 521, 589, 764, 996
FspBI CTAG 3 cut(s) 108, 657, 929
GlaI GCGC 1 cut(s) 270
GluI GCNGC 6 cut(s) 133, 136, 521, 589, 764, 996
GsuI CTGGAG 1 cut(s) 601
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 836
HapII CCGG 1 cut(s) 306
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 1203
Hin1II CATG 7 cut(s) 295, 317, 463, 478, 841, 1237, 1278
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 167
HpaII CCGG 1 cut(s) 306
HphI GGTGA 5 cut(s) 32, 107, 1090, 1115, 1204
Hpy166II GTNNAC 2 cut(s) 1093, 1187
Hpy188I TCNGA 3 cut(s) 181, 630, 805
Hpy188III TCNNGA 9 cut(s) 60, 85, 360, 529, 1025, 1117, 1156, 1234, 1303
Hpy8I GTNNAC 2 cut(s) 1093, 1187
HpyAV CCTTC 6 cut(s) 25, 114, 179, 202, 502, 806
HpyCH4III ACNGT 4 cut(s) 447, 693, 1231, 1240
HpyCH4IV ACGT 1 cut(s) 1203
HpyCH4V TGCA 9 cut(s) 138, 466, 523, 730, 984, 998, 1013, 1132, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 585
HpyF3I CTNAG 6 cut(s) 178, 256, 575, 627, 674, 848
HpySE526I ACGT 1 cut(s) 1203
Hsp92I GRCGYC 1 cut(s) 1203
Hsp92II CATG 7 cut(s) 295, 317, 463, 478, 841, 1237, 1278
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
Lsp1109I GCAGC 5 cut(s) 119, 122, 507, 750, 982
LweI GCATC 3 cut(s) 119, 250, 892
MaeI CTAG 3 cut(s) 108, 657, 929
MaeII ACGT 1 cut(s) 1203
MalI GATC 8 cut(s) 102, 364, 473, 533, 595, 1023, 1196, 1224
MboI GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
MboII GAAGA 6 cut(s) 32, 194, 280, 828, 962, 1078
MflI RGATCY 1 cut(s) 362
MluCI AATT 8 cut(s) 355, 643, 669, 825, 885, 891, 1083, 1207
MlyI GAGTC 1 cut(s) 1212
MroXI GAANNNNTTC 1 cut(s) 635
MseI TTAA 3 cut(s) 354, 828, 960
MslI CAYNNNNRTG 1 cut(s) 1232
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 306, 307
Mva1269I GAATGC 2 cut(s) 658, 986
MvnI CGCG 1 cut(s) 481
MwoI GCNNNNNNNGC 2 cut(s) 266, 585
NciI CCSGG 2 cut(s) 306, 307
NdeII GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
NlaIII CATG 7 cut(s) 295, 317, 463, 478, 841, 1237, 1278
NspI RCATGY 1 cut(s) 1278
PagI TCATGA 1 cut(s) 1233
PctI GAATGC 2 cut(s) 658, 986
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 9 cut(s) 56, 310, 551, 571, 631, 743, 966, 1120, 1152
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 6 cut(s) 134, 137, 522, 590, 765, 997
PleI GAGTC 1 cut(s) 1212
PpsI GAGTC 1 cut(s) 1212
PshBI ATTAAT 1 cut(s) 828
PstI CTGCAG 3 cut(s) 140, 525, 1000
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 1 cut(s) 362
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 1232
SaqAI TTAA 3 cut(s) 354, 828, 960
SatI GCNGC 6 cut(s) 133, 136, 521, 589, 764, 996
Sau3AI GATC 8 cut(s) 100, 362, 471, 531, 593, 1021, 1194, 1222
SchI GAGTC 1 cut(s) 1212
ScrFI CCNGG 2 cut(s) 306, 307
SfaNI GCATC 3 cut(s) 119, 250, 892
SfcI CTRYAG 5 cut(s) 136, 220, 521, 996, 1173
SmaI CCCGGG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 1232
SmlI CTYRAG 2 cut(s) 1190, 1301
SmoI CTYRAG 2 cut(s) 1190, 1301
Sse9I AATT 8 cut(s) 355, 643, 669, 825, 885, 891, 1083, 1207
SsiI CCGC 3 cut(s) 564, 588, 591
SspI AATATT 1 cut(s) 1284
SspMI CTAG 3 cut(s) 108, 657, 929
StyD4I CCNGG 2 cut(s) 304, 305
TaaI ACNGT 4 cut(s) 447, 693, 1231, 1240
TaiI ACGT 1 cut(s) 1206
TaqI TCGA 4 cut(s) 43, 54, 435, 1221
TasI AATT 8 cut(s) 355, 643, 669, 825, 885, 891, 1083, 1207
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 9 cut(s) 56, 310, 551, 571, 631, 743, 966, 1120, 1152
Tru1I TTAA 3 cut(s) 354, 828, 960
Tru9I TTAA 3 cut(s) 354, 828, 960
TscAI CASTG 3 cut(s) 145, 625, 904
TseI GCWGC 5 cut(s) 132, 135, 520, 763, 995
TspDTI ATGAA 6 cut(s) 280, 302, 468, 719, 788, 936
TspGWI ACGGA 1 cut(s) 788
TspMI CCCGGG 1 cut(s) 305
TspRI CASTG 3 cut(s) 145, 625, 904
Van91I CCANNNNNTGG 1 cut(s) 66
VspI ATTAAT 1 cut(s) 828
XapI RAATTY 2 cut(s) 669, 891
XceI RCATGY 1 cut(s) 1278
XmaI CCCGGG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 3 cut(s) 108, 657, 929
ZraI GACGTC 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.