MD16G1093900.v1.1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016032
Physical Location & Seq
Reverse (-)
6497615 .. 6500288
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1093900.v1.1.491

Sequence Viewer

Length: 1416 bp
ATGGGTTTGGAGGCAGCAATGGAAAGGCTTCGACCCCTCGTAGAAGCCAAGCAATGGGACTACTGTGTCGTCTGGAAACTCGGCGACGACCCCTCCAGGTTTATTGAGCTGATGGGTTGCTGCTGCGGCGGCGGGTGCGACGGCGGTACTGTCAAAGTGGAAGAAGGAGAGAGCGATGAGACTCGGGTTTGCAGAGATGGGTTTCTGAAGCACTCGATCAGGACTAAGGCTTGTGAGGCGCTTGCTCAGCTTCCTTGTTCCATGCCTCTGTATTCTGGGATTCATACGGAGGTGGTGATATCGATGCAACCCAGGTGGCTCTGTGGGCATCCCAATGCCTCGGCTTCAAATCCTTCTCAATCTCACGATTCAACTGGAACCCGAGTATTGATCCCGATGCTTAGTGGCCTTATTGAGCTTTTCTCCACAAAGAATATTCCGGAAAATCGAAAGATGGTAGAGTTGTTTATGTCTTCATTTAATGTCTCTGTAAAACAAGAAGTCATATCTCCACATGATTATGCCAATGTGAGCCTCAATGCTAGTGGACCACAAAGGGTGCTACCTTCTTTGAGTTTTGCAAGCTTCATTCCTAGGCCACACGTTTTACCCTCAGTTTCCCCATCGACCTCCTGCCCTGAGGGATCATCCAGCGGTTCGAACCCTTCAAGTCATCAACATCCATTGCTGTCTTCGCACTCTAAAAAGCCCAATTGTGGCGACAACTTGTTCCAGCAACCAGCAGGCTTTGCTTCAGGCAGTGGCAGTGTGGAAGAGGAACATAATGCAAAGGTTAACAGGAAACAAAGCGGGCACTACCGATCCAAGAATCTCATAGCTGAGAGAAATAGGAGGACAAAGATCAAAGACGGGCTCTTTGCTCTGCGTTCCCTAGTCCCGAAAATAACCAAGATGAATACAGCTGCTATTATAGGAGATGCTATTGAATATATAGAAGAGTTGCAGAAGAAGAAGAAAGAACTTCAAGACGAGCTCAGGGAACTTGACGAAGAGGAGGACCTCACCAAGACCAAAGTGGATATGAAAGTTTTGGCCTCGGACGAGAGAAAGGAAGGCAGAATTTGCTTGACTTCTGCAGAGCAAAACAAGAGTTCCTCCAGTTTTGTCCGAAAAAGTCCAACCGTTGTGCAAGTGGAAGTGAACCAGATTGGCAAAAGAGATTGCTTGATTAAGCTATTCTCTGAGCAGAACCGAGGCGGGTTTGCAAGGTTGATGGAGAATATGGATTCCTTAGGACTTCAAGTTGTTGATGCCAATGTCACCACGTTCGACGGAAATGTCCTAAATATTCTCAAGGTTGAGGCAAACAAAGACATTCAGGCAAAGAAATTGAGAGACAGTTTAATCCAGCTAACAAGGGGGACAAATCAGACTGTTCATAAAGGGATAATCTGA

Protein Analysis

472

Amino Acids

51.94

Weight (kDa)

8.15

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 8 - 160 1.1e-20 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 274 - 322 2.5e-10 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 384 - 456 2.7e-10 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10610 AT1G10610 AT1G10610
fragaria_vesca FvH4_4g34320
malus_domestica MD16G1093900.v1.1
prunus_persica Prupe.1G252600_v2.0.a1
pyrus_communis pycom16g07990
rosa_chinensis RchiOBHm_Chr4g0443741
rosa_laevigata RLG00000005894
rosa_roxburghii Rroxscaffold_5G00384310
rosa_samantha Rh4AG407100 Rh4BG418000 Rh4CG432200 Rh4DG413300
rosa_wichuraiana Rw4G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 65, 1298
AccB7I CCANNNNNTGG 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 7 cut(s) 126, 129, 132, 144, 654, 810, 1218
AclWI GGATC 3 cut(s) 385, 652, 816
AcsI RAATTY 1 cut(s) 1080
AcuI CTGAAG 2 cut(s) 227, 738
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 54, 716
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 348, 372, 669, 947, 986, 1262
AjnI CCWGG 2 cut(s) 95, 311
AluBI AGCT 9 cut(s) 109, 250, 418, 585, 839, 923, 994, 1195, 1372
AluI AGCT 9 cut(s) 109, 250, 418, 585, 839, 923, 994, 1195, 1372
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 3 cut(s) 173, 490, 1350
AlwI GGATC 3 cut(s) 385, 652, 816
Ama87I CYCGRG 2 cut(s) 183, 381
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 3 cut(s) 406, 596, 1053
ApeKI GCWGC 4 cut(s) 14, 120, 123, 923
ApoI RAATTY 1 cut(s) 1080
ArsI GACNNNNNNTTYG 2 cut(s) 860, 892
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 593
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 548, 1018
AsuHPI GGTGA 3 cut(s) 307, 1015, 1273
AsuII TTCGAA 1 cut(s) 659
AvaI CYCGRG 2 cut(s) 183, 381
AvaII GGWCC 2 cut(s) 548, 1018
AvrII CCTAGG 1 cut(s) 593
AxyI CCTNAGG 2 cut(s) 639, 1252
BaeGI GKGCMC 1 cut(s) 816
BanII GRGCYC 2 cut(s) 876, 996
BbsI GAAGAC 2 cut(s) 465, 684
Bbv12I GWGCWC 1 cut(s) 996
BbvI GCAGC 4 cut(s) 26, 107, 110, 910
BccI CCATC 5 cut(s) 106, 191, 448, 631, 1228
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 97, 313
BcoDI GTCTC 3 cut(s) 173, 490, 1350
BfaI CTAG 3 cut(s) 543, 594, 893
BfmI CTRYAG 1 cut(s) 1095
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 6 cut(s) 15, 121, 124, 127, 130, 924
BlnI CCTAGG 1 cut(s) 593
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 6 cut(s) 16, 122, 125, 128, 131, 925
Bme1390I CCNGG 2 cut(s) 97, 313
Bme18I GGWCC 2 cut(s) 548, 1018
BmeT110I CYCGRG 2 cut(s) 183, 381
BmgT120I GGNCC 2 cut(s) 548, 1018
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 97, 313
BmsI GCATC 5 cut(s) 294, 337, 387, 928, 1261
BpiI GAAGAC 2 cut(s) 465, 684
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 2 cut(s) 79, 1102
Bpu10I CCTNAGC 1 cut(s) 995
Bpu1102I GCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 1298
Bsa29I ATCGAT 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 311, 339, 593, 1056, 1213
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 716
Bse1I ACTGG 2 cut(s) 379, 1119
Bse21I CCTNAGG 2 cut(s) 639, 1252
Bse3DI GCAATG 3 cut(s) 24, 59, 683
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 2 cut(s) 97, 313
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 5 cut(s) 311, 339, 593, 1056, 1213
BseGI GGATG 3 cut(s) 328, 647, 679
BseLI CCNNNNNNNGG 2 cut(s) 54, 716
BseMI GCAATG 3 cut(s) 24, 59, 683
BseMII CTCAG 6 cut(s) 260, 627, 630, 831, 1009, 1194
BseNI ACTGG 2 cut(s) 379, 1119
BseRI GAGGAG 1 cut(s) 1028
BseSI GKGCMC 1 cut(s) 816
BseXI GCAGC 4 cut(s) 26, 107, 110, 910
BshFI GGCC 3 cut(s) 408, 598, 1055
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 2 cut(s) 183, 381
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 3 cut(s) 71, 881, 1396
BslI CCNNNNNNNGG 2 cut(s) 54, 716
BsmAI GTCTC 3 cut(s) 173, 490, 1350
BsmFI GGGAC 3 cut(s) 71, 881, 1396
BsnI GGCC 3 cut(s) 408, 598, 1055
BsoBI CYCGRG 2 cut(s) 183, 381
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 3 cut(s) 816, 876, 996
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 5 cut(s) 216, 390, 644, 821, 861
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 7 cut(s) 126, 129, 132, 144, 654, 810, 1218
BspANI GGCC 3 cut(s) 408, 598, 1055
BspCNI CTCAG 6 cut(s) 259, 626, 631, 832, 1008, 1195
BspDI ATCGAT 1 cut(s) 302
BspEI TCCGGA 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 1099
BspPI GGATC 3 cut(s) 385, 652, 816
BspT104I TTCGAA 1 cut(s) 659
BsrDI GCAATG 3 cut(s) 24, 59, 683
BsrI ACTGG 2 cut(s) 379, 1119
BssECI CCNNGG 5 cut(s) 311, 339, 593, 1056, 1213
BssMI GATC 5 cut(s) 216, 390, 644, 821, 861
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 2 cut(s) 97, 313
Bst4CI ACNGT 5 cut(s) 65, 151, 1144, 1361, 1396
Bst6I CTCTTC 3 cut(s) 768, 951, 1005
BstAPI GCANNNNNTGC 2 cut(s) 749, 1083
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 4 cut(s) 243, 583, 745, 812
BstDEI CTNAG 9 cut(s) 225, 246, 401, 613, 639, 840, 995, 1203, 1252
BstF5I GGATG 3 cut(s) 328, 647, 679
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 5 cut(s) 219, 393, 647, 824, 864
BstMAI GTCTC 3 cut(s) 173, 490, 1350
BstMBI GATC 5 cut(s) 216, 390, 644, 821, 861
BstMWI GCNNNNNNNGC 9 cut(s) 126, 129, 135, 236, 247, 325, 694, 749, 1083
BstNI CCWGG 2 cut(s) 97, 313
BstSCI CCNGG 2 cut(s) 95, 311
BstSFI CTRYAG 1 cut(s) 1095
BstSLI GKGCMC 1 cut(s) 816
BstV1I GCAGC 4 cut(s) 26, 107, 110, 910
BstV2I GAAGAC 2 cut(s) 465, 684
Bsu15I ATCGAT 1 cut(s) 302
Bsu36I CCTNAGG 2 cut(s) 639, 1252
BsuRI GGCC 3 cut(s) 408, 598, 1055
BsuTUI ATCGAT 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 328, 647, 679
BtsI GCAGTG 2 cut(s) 766, 772
BtsIMutI CAGTG 2 cut(s) 766, 772
Cac8I GCNNGC 4 cut(s) 243, 583, 745, 812
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 548, 1018
ClaI ATCGAT 1 cut(s) 302
Csp6I GTAC 1 cut(s) 147
CspCI CAANNNNNGTGG 4 cut(s) 296, 331, 526, 561
CviAII CATG 2 cut(s) 262, 515
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 9 cut(s) 225, 246, 401, 613, 639, 840, 995, 1203, 1252
DpnI GATC 5 cut(s) 218, 392, 646, 823, 863
DpnII GATC 5 cut(s) 216, 390, 644, 821, 861
DrdI GACNNNNNNGTC 2 cut(s) 65, 1298
DseDI GACNNNNNNGTC 2 cut(s) 65, 1298
Eam1104I CTCTTC 3 cut(s) 768, 951, 1005
EarI CTCTTC 3 cut(s) 768, 951, 1005
Ecl136II GAGCTC 1 cut(s) 994
Eco130I CCWWGG 1 cut(s) 593
Eco24I GRGCYC 2 cut(s) 876, 996
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 548, 1018
Eco53kI GAGCTC 1 cut(s) 994
Eco57I CTGAAG 2 cut(s) 227, 738
Eco81I CCTNAGG 2 cut(s) 639, 1252
Eco88I CYCGRG 2 cut(s) 183, 381
EcoICRI GAGCTC 1 cut(s) 994
EcoO109I RGGNCCY 1 cut(s) 1018
EcoRII CCWGG 2 cut(s) 95, 311
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 593
EcoT38I GRGCYC 2 cut(s) 876, 996
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 2 cut(s) 265, 518
FaqI GGGAC 3 cut(s) 71, 881, 1396
FatI CATG 2 cut(s) 261, 514
FauI CCCGC 3 cut(s) 125, 803, 1211
Fnu4HI GCNGC 6 cut(s) 15, 121, 124, 127, 130, 924
FokI GGATG 3 cut(s) 315, 634, 666
FriOI GRGCYC 2 cut(s) 876, 996
Fsp4HI GCNGC 6 cut(s) 15, 121, 124, 127, 130, 924
FspBI CTAG 3 cut(s) 543, 594, 893
GlaI GCGC 1 cut(s) 240
GluI GCNGC 6 cut(s) 15, 121, 124, 127, 130, 924
GsuI CTGGAG 2 cut(s) 79, 1102
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 3 cut(s) 408, 598, 1055
HapII CCGG 1 cut(s) 440
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 265, 518
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 5 cut(s) 181, 280, 368, 829, 1247
HpaI GTTAAC 1 cut(s) 796
HpaII CCGG 1 cut(s) 440
HphI GGTGA 3 cut(s) 307, 1015, 1273
Hpy166II GTNNAC 3 cut(s) 548, 796, 1162
Hpy188I TCNGA 6 cut(s) 207, 1060, 1130, 1204, 1392, 1415
Hpy188III TCNNGA 7 cut(s) 73, 220, 365, 394, 440, 898, 986
Hpy8I GTNNAC 3 cut(s) 548, 796, 1162
Hpy99I CGWCG 3 cut(s) 89, 143, 1295
HpyAV CCTTC 5 cut(s) 158, 363, 576, 675, 1067
HpyCH4III ACNGT 5 cut(s) 65, 151, 1144, 1361, 1396
HpyCH4IV ACGT 2 cut(s) 603, 1286
HpyCH4V TGCA 8 cut(s) 192, 307, 581, 788, 964, 1097, 1150, 1226
HpyF10VI GCNNNNNNNGC 9 cut(s) 126, 129, 135, 236, 247, 325, 694, 749, 1083
HpyF3I CTNAG 9 cut(s) 225, 246, 401, 613, 639, 840, 995, 1203, 1252
HpySE526I ACGT 2 cut(s) 603, 1286
Hsp92II CATG 2 cut(s) 265, 518
HspAI GCGC 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 5 cut(s) 216, 390, 644, 821, 861
Lsp1109I GCAGC 4 cut(s) 26, 107, 110, 910
LweI GCATC 5 cut(s) 294, 337, 387, 928, 1261
MaeI CTAG 3 cut(s) 543, 594, 893
MaeII ACGT 2 cut(s) 603, 1286
MaeIII GTNAC 1 cut(s) 1279
MalI GATC 5 cut(s) 218, 392, 646, 823, 863
MboI GATC 5 cut(s) 216, 390, 644, 821, 861
MboII GAAGA 9 cut(s) 173, 465, 684, 785, 968, 979, 982, 985, 1022
MfeI CAATTG 1 cut(s) 712
MhlI GDGCHC 3 cut(s) 816, 876, 996
MluCI AATT 3 cut(s) 712, 1080, 1349
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 1163
MroI TCCGGA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 4 cut(s) 480, 795, 1191, 1364
MslI CAYNNNNRTG 2 cut(s) 333, 519
MspA1I CMGCKG 2 cut(s) 654, 923
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 97, 313
MunI CAATTG 1 cut(s) 712
MvaI CCWGG 2 cut(s) 97, 313
MwoI GCNNNNNNNGC 9 cut(s) 126, 129, 135, 236, 247, 325, 694, 749, 1083
NdeII GATC 5 cut(s) 216, 390, 644, 821, 861
NlaIII CATG 2 cut(s) 265, 518
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 2 cut(s) 60, 320
NmuCI GTSAC 1 cut(s) 1279
NspV TTCGAA 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 280, 368, 829, 1247
PflMI CCANNNNNTGG 1 cut(s) 54
PkrI GCNGC 6 cut(s) 16, 122, 125, 128, 131, 925
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 1018
Psp124BI GAGCTC 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 1018
Psp6I CCWGG 2 cut(s) 95, 311
PspGI CCWGG 2 cut(s) 95, 311
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 548, 1018
PspPPI RGGWCCY 1 cut(s) 1018
PstI CTGCAG 1 cut(s) 1099
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 2 cut(s) 333, 519
SacI GAGCTC 1 cut(s) 996
SaqAI TTAA 4 cut(s) 480, 795, 1191, 1364
SatI GCNGC 6 cut(s) 15, 121, 124, 127, 130, 924
Sau3AI GATC 5 cut(s) 216, 390, 644, 821, 861
Sau96I GGNCC 2 cut(s) 548, 1018
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 2 cut(s) 97, 313
SduI GDGCHC 3 cut(s) 816, 876, 996
SfaNI GCATC 5 cut(s) 294, 337, 387, 928, 1261
SfcI CTRYAG 1 cut(s) 1095
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 2 cut(s) 548, 1018
SmiMI CAYNNNNRTG 2 cut(s) 333, 519
SmlI CTYRAG 1 cut(s) 1313
SmoI CTYRAG 1 cut(s) 1313
Sse9I AATT 3 cut(s) 712, 1080, 1349
SsiI CCGC 7 cut(s) 126, 129, 132, 144, 654, 810, 1218
SspI AATATT 2 cut(s) 436, 1309
SspMI CTAG 3 cut(s) 543, 594, 893
SstI GAGCTC 1 cut(s) 996
StyD4I CCNGG 2 cut(s) 95, 311
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 5 cut(s) 65, 151, 1144, 1361, 1396
TaiI ACGT 2 cut(s) 606, 1289
TaqI TCGA 7 cut(s) 31, 215, 302, 448, 626, 659, 1290
TasI AATT 3 cut(s) 712, 1080, 1349
TauI GCSGC 2 cut(s) 129, 132
TfiI GAWTC 4 cut(s) 280, 368, 829, 1247
Tru1I TTAA 4 cut(s) 480, 795, 1191, 1364
Tru9I TTAA 4 cut(s) 480, 795, 1191, 1364
TscAI CASTG 2 cut(s) 766, 772
TseFI GTSAC 1 cut(s) 1279
TseI GCWGC 4 cut(s) 14, 120, 123, 923
Tsp45I GTSAC 1 cut(s) 1279
TspDTI ATGAA 6 cut(s) 272, 465, 577, 929, 1058, 1388
TspGWI ACGGA 2 cut(s) 302, 1308
TspRI CASTG 2 cut(s) 766, 772
Van91I CCANNNNNTGG 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 548, 1018
XapI RAATTY 1 cut(s) 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 1033
XmaJI CCTAGG 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 543, 594, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.