pycom16g07990
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016032
Physical Location & Seq
Reverse (-)
5284418 .. 5286763
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07990.6

Sequence Viewer

Length: 1431 bp
ATGAGATTGATAGGTTTGGAGGGAGCAATGGAAAGGCTTCGACCCCTCGTAGAAGCCAAGCAATGGGACTACTGTGTCGTCTGGAAACTCGGCGACGACCCCTCCAGATTTATTGAGCTGATGGGTTGCTGCTGCGGCGGCGGGTACGACGGCGGTACTGTCAAAGTGGAAGAAGGAGAGAGCGATGAGACTCGGGTTTGCAGAGATGGGTTTCTGAAGCACTCGATCAGGACTAAGGCTTGTGAGGCGCTTGCTCAGCTTCCTTGTTCCATGCCTCTGTATTCTGGGATTCATACGGAGGTGGTGATATCGATGCAACCCAGGTGGCTCTGTGGGCATCCCAATGCCTCGGCTTCAAATCCTTCTCAATCTCACGATTCAACTGGAACCCGAGTATTGATCCCAATGCTTAGTGGCCTTATTGAGCTCTTCTCCACAAAGAACATTCCAGAAAATCGAAAGATGGTAGAGTTGTTTATGGCTTCATTTAATGTCTCTGTAAAACAAGAAGTCATATCTGCACATGATTATGCCAGTGTGAGCCTCAATGCTAGTGAACCACAAAGGGTGCTACCTTCTTTGAGTTTTGCAAGCGTCATTCCTAGGCCACACGTTTTCCCCTCAGTTTCCCCATCGACCTCCTGCCCTGAGGGATCATCCAGTGGTTCGAACCCTTCAAGTCATCAACATCCATTGCTGTCTTCGCACTCTAAAAAGCCCAAGTGTGGCGACAACTTGTTCCAGCAACCAGCAGGCTTTGCTTCGGGCAGTGGCAGTGTCAGTGTGGAAGAGGAACATAATGCAAAGGTTAACAGGAAACAAAGCGGGCACTACCGATCCAAGAATCTCATAGCTGAGAGAAATAGGAGGACGAAGATCAAAGACGGGCTCTTTGCTCTGCGTTCTCTAGTCCCGAAAATAACCAAGATGAATACAGCTGCTATTGTAGGAGATGCTATTGAATATATAGAAGAGTTGCAGAAGAAGGAGAAAGAACTTCAAGATGAGCTCAGGGAACTTGATGAAGAGGAGGACCTCACCAAGACCAAAGCGGATATGAAAGTTTTGGCCTTGGACGAGAGAAAAGAAGGCAGAATTTGCTTGACTTCTGCAGAGCAAAACAAGAGTTCCTCCAGTTTTGTCCGAAAAAGTCCAACCGTTGTGCAAGTGGAAGTGAACCAGATTGGCAAAAGAGATTGCTTGATTAAGCTGTTCTCTGAGCATAACCGAGGCGGGTTTGCAAGGTTGATGGAGAATATGGATTCCTTAGGACTTCAAGTTGTTGATGCCAATGTCACCACATTCGACGGAAATGTCCTAAATATTCTCAAGGTTGAGGCAAACAAAGACATTCAGGCAAAGAAATTGAGAGACAGTTTAATCCAGCTAACAAGGGAGACAAATCAGACTGTTCATAAAGGGATAATCTGA

Protein Analysis

477

Amino Acids

52.62

Weight (kDa)

7.57

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10610 AT1G10610 AT1G10610
fragaria_vesca FvH4_4g34320
malus_domestica MD16G1093900.v1.1
prunus_persica Prupe.1G252600_v2.0.a1
pyrus_communis pycom16g07990
rosa_chinensis RchiOBHm_Chr4g0443741
rosa_laevigata RLG00000005894
rosa_roxburghii Rroxscaffold_5G00384310
rosa_samantha Rh4AG407100 Rh4BG418000 Rh4CG432200 Rh4DG413300
rosa_wichuraiana Rw4G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 74, 1313
AccB7I CCANNNNNTGG 1 cut(s) 63
AciI CCGC 7 cut(s) 135, 138, 141, 153, 825, 1052, 1233
AclWI GGATC 3 cut(s) 394, 661, 831
AcsI RAATTY 1 cut(s) 1095
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 2 cut(s) 146, 157
AfiI CCNNNNNNNGG 2 cut(s) 63, 725
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 6 cut(s) 357, 381, 678, 962, 1001, 1277
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 8 cut(s) 118, 259, 427, 854, 938, 1009, 1210, 1387
AluI AGCT 8 cut(s) 118, 259, 427, 854, 938, 1009, 1210, 1387
Alw21I GWGCWC 2 cut(s) 429, 1011
Alw26I GTCTC 4 cut(s) 182, 499, 1365, 1391
AlwI GGATC 3 cut(s) 394, 661, 831
Ama87I CYCGRG 2 cut(s) 192, 390
AoxI GGCC 3 cut(s) 415, 605, 1068
ApeKI GCWGC 3 cut(s) 129, 132, 938
ApoI RAATTY 1 cut(s) 1095
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
Asp700I GAANNNNTTC 1 cut(s) 36
AspA2I CCTAGG 1 cut(s) 602
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 1033
AsuHPI GGTGA 3 cut(s) 316, 1030, 1288
AsuII TTCGAA 1 cut(s) 668
AvaI CYCGRG 2 cut(s) 192, 390
AvaII GGWCC 1 cut(s) 1033
AvrII CCTAGG 1 cut(s) 602
AxyI CCTNAGG 2 cut(s) 648, 1267
BaeGI GKGCMC 1 cut(s) 831
BanII GRGCYC 3 cut(s) 429, 891, 1011
BbsI GAAGAC 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 429, 1011
BbvI GCAGC 3 cut(s) 116, 119, 925
BccI CCATC 5 cut(s) 115, 200, 457, 640, 1243
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 4 cut(s) 182, 499, 1365, 1391
BfaI CTAG 3 cut(s) 552, 603, 908
BfmI CTRYAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 5 cut(s) 130, 133, 136, 139, 939
BlnI CCTAGG 1 cut(s) 602
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 5 cut(s) 131, 134, 137, 140, 940
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 1033
BmeT110I CYCGRG 2 cut(s) 192, 390
BmgT120I GGNCC 1 cut(s) 1033
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 4 cut(s) 303, 346, 943, 1276
BpiI GAAGAC 1 cut(s) 693
BplI GAGNNNNNCTC 2 cut(s) 416, 448
BpmI CTGGAG 2 cut(s) 88, 1117
Bpu10I CCTNAGC 1 cut(s) 1010
Bpu1102I GCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 1313
Bsa29I ATCGAT 1 cut(s) 311
BsaJI CCNNGG 5 cut(s) 320, 348, 602, 1071, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 725
Bse1I ACTGG 4 cut(s) 388, 534, 660, 1134
Bse21I CCTNAGG 2 cut(s) 648, 1267
Bse3DI GCAATG 3 cut(s) 33, 68, 692
BseBI CCWGG 1 cut(s) 322
BseCI ATCGAT 1 cut(s) 311
BseDI CCNNGG 5 cut(s) 320, 348, 602, 1071, 1228
BseGI GGATG 3 cut(s) 337, 656, 688
BseLI CCNNNNNNNGG 2 cut(s) 63, 725
BseMI GCAATG 3 cut(s) 33, 68, 692
BseMII CTCAG 6 cut(s) 269, 636, 639, 846, 1024, 1209
BseNI ACTGG 4 cut(s) 388, 534, 660, 1134
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 1 cut(s) 831
BseXI GCAGC 3 cut(s) 116, 119, 925
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 3 cut(s) 417, 607, 1070
BshVI ATCGAT 1 cut(s) 311
BsiHKAI GWGCWC 2 cut(s) 429, 1011
BsiHKCI CYCGRG 2 cut(s) 192, 390
BslFI GGGAC 2 cut(s) 80, 896
BslI CCNNNNNNNGG 2 cut(s) 63, 725
BsmAI GTCTC 4 cut(s) 182, 499, 1365, 1391
BsmFI GGGAC 2 cut(s) 80, 896
BsnI GGCC 3 cut(s) 417, 607, 1070
BsoBI CYCGRG 2 cut(s) 192, 390
Bsp119I TTCGAA 1 cut(s) 668
Bsp1286I GDGCHC 4 cut(s) 429, 831, 891, 1011
Bsp143I GATC 5 cut(s) 225, 399, 653, 836, 876
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 7 cut(s) 135, 138, 141, 153, 825, 1052, 1233
BspANI GGCC 3 cut(s) 417, 607, 1070
BspCNI CTCAG 6 cut(s) 268, 635, 640, 847, 1023, 1210
BspDI ATCGAT 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 388
BspMAI CTGCAG 1 cut(s) 1114
BspPI GGATC 3 cut(s) 394, 661, 831
BspQI GCTCTTC 1 cut(s) 434
BspT104I TTCGAA 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 33, 68, 692
BsrI ACTGG 4 cut(s) 388, 534, 660, 1134
BssECI CCNNGG 5 cut(s) 320, 348, 602, 1071, 1228
BssMI GATC 5 cut(s) 225, 399, 653, 836, 876
BssT1I CCWWGG 2 cut(s) 602, 1071
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 5 cut(s) 74, 160, 1159, 1376, 1411
Bst6I CTCTTC 4 cut(s) 434, 783, 966, 1020
BstAPI GCANNNNNTGC 2 cut(s) 758, 1098
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 252, 592, 754, 827
BstDEI CTNAG 9 cut(s) 234, 255, 410, 622, 648, 855, 1010, 1218, 1267
BstF5I GGATG 3 cut(s) 337, 656, 688
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 228, 402, 656, 839, 879
BstMAI GTCTC 4 cut(s) 182, 499, 1365, 1391
BstMBI GATC 5 cut(s) 225, 399, 653, 836, 876
BstMWI GCNNNNNNNGC 8 cut(s) 135, 138, 245, 256, 334, 703, 758, 1098
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 1110
BstSLI GKGCMC 1 cut(s) 831
BstV1I GCAGC 3 cut(s) 116, 119, 925
BstV2I GAAGAC 1 cut(s) 693
Bsu15I ATCGAT 1 cut(s) 311
Bsu36I CCTNAGG 2 cut(s) 648, 1267
BsuRI GGCC 3 cut(s) 417, 607, 1070
BsuTUI ATCGAT 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 337, 656, 688
BtsI GCAGTG 2 cut(s) 775, 781
BtsIMutI CAGTG 5 cut(s) 541, 667, 775, 781, 787
Cac8I GCNNGC 4 cut(s) 252, 592, 754, 827
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 1033
ClaI ATCGAT 1 cut(s) 311
CseI GACGC 1 cut(s) 583
Csp6I GTAC 2 cut(s) 145, 156
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 2 cut(s) 271, 524
CviQI GTAC 2 cut(s) 145, 156
DdeI CTNAG 9 cut(s) 234, 255, 410, 622, 648, 855, 1010, 1218, 1267
DpnI GATC 5 cut(s) 227, 401, 655, 838, 878
DpnII GATC 5 cut(s) 225, 399, 653, 836, 876
DrdI GACNNNNNNGTC 2 cut(s) 74, 1313
DseDI GACNNNNNNGTC 2 cut(s) 74, 1313
Eam1104I CTCTTC 4 cut(s) 434, 783, 966, 1020
EarI CTCTTC 4 cut(s) 434, 783, 966, 1020
Ecl136II GAGCTC 2 cut(s) 427, 1009
Eco130I CCWWGG 2 cut(s) 602, 1071
Eco24I GRGCYC 3 cut(s) 429, 891, 1011
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 1033
Eco53kI GAGCTC 2 cut(s) 427, 1009
Eco57I CTGAAG 1 cut(s) 236
Eco81I CCTNAGG 2 cut(s) 648, 1267
Eco88I CYCGRG 2 cut(s) 192, 390
EcoICRI GAGCTC 2 cut(s) 427, 1009
EcoO109I RGGNCCY 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 602, 1071
EcoT38I GRGCYC 3 cut(s) 429, 891, 1011
ErhI CCWWGG 2 cut(s) 602, 1071
FaeI CATG 2 cut(s) 274, 527
FaqI GGGAC 2 cut(s) 80, 896
FatI CATG 2 cut(s) 270, 523
FauI CCCGC 3 cut(s) 134, 818, 1226
Fnu4HI GCNGC 5 cut(s) 130, 133, 136, 139, 939
FokI GGATG 3 cut(s) 324, 643, 675
FriOI GRGCYC 3 cut(s) 429, 891, 1011
Fsp4HI GCNGC 5 cut(s) 130, 133, 136, 139, 939
FspBI CTAG 3 cut(s) 552, 603, 908
GlaI GCGC 1 cut(s) 249
GluI GCNGC 5 cut(s) 130, 133, 136, 139, 939
GsuI CTGGAG 2 cut(s) 88, 1117
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 3 cut(s) 417, 607, 1070
HgaI GACGC 1 cut(s) 583
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 274, 527
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 5 cut(s) 190, 289, 377, 844, 1262
HpaI GTTAAC 1 cut(s) 811
HphI GGTGA 3 cut(s) 316, 1030, 1288
Hpy166II GTNNAC 3 cut(s) 557, 811, 1177
Hpy188I TCNGA 5 cut(s) 216, 1145, 1219, 1407, 1430
Hpy188III TCNNGA 7 cut(s) 82, 105, 229, 374, 449, 913, 1001
Hpy8I GTNNAC 3 cut(s) 557, 811, 1177
Hpy99I CGWCG 3 cut(s) 98, 152, 1310
HpyAV CCTTC 6 cut(s) 167, 372, 585, 684, 979, 1082
HpyCH4III ACNGT 5 cut(s) 74, 160, 1159, 1376, 1411
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 9 cut(s) 201, 316, 521, 590, 803, 979, 1112, 1165, 1241
HpyF10VI GCNNNNNNNGC 8 cut(s) 135, 138, 245, 256, 334, 703, 758, 1098
HpyF3I CTNAG 9 cut(s) 234, 255, 410, 622, 648, 855, 1010, 1218, 1267
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 2 cut(s) 274, 527
HspAI GCGC 1 cut(s) 248
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 5 cut(s) 225, 399, 653, 836, 876
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 3 cut(s) 116, 119, 925
LweI GCATC 4 cut(s) 303, 346, 943, 1276
MaeI CTAG 3 cut(s) 552, 603, 908
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 1294
MalI GATC 5 cut(s) 227, 401, 655, 838, 878
MboI GATC 5 cut(s) 225, 399, 653, 836, 876
MboII GAAGA 8 cut(s) 182, 421, 693, 800, 886, 983, 994, 1037
MhlI GDGCHC 4 cut(s) 429, 831, 891, 1011
MluCI AATT 2 cut(s) 1095, 1364
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 1178
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 4 cut(s) 489, 810, 1206, 1379
MslI CAYNNNNRTG 2 cut(s) 342, 528
MspA1I CMGCKG 1 cut(s) 938
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 8 cut(s) 135, 138, 245, 256, 334, 703, 758, 1098
NdeII GATC 5 cut(s) 225, 399, 653, 836, 876
NlaIII CATG 2 cut(s) 274, 527
NlaIV GGNNCC 1 cut(s) 388
NmeAIII GCCGAG 2 cut(s) 69, 329
NmuCI GTSAC 1 cut(s) 1294
NspV TTCGAA 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 4 cut(s) 289, 377, 844, 1262
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 5 cut(s) 131, 134, 137, 140, 940
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 1033
Psp124BI GAGCTC 2 cut(s) 429, 1011
Psp5II RGGWCCY 1 cut(s) 1033
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 1033
PspPPI RGGWCCY 1 cut(s) 1033
PstI CTGCAG 1 cut(s) 1114
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 146, 157
RsaNI GTAC 2 cut(s) 145, 156
RseI CAYNNNNRTG 2 cut(s) 342, 528
SacI GAGCTC 2 cut(s) 429, 1011
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 4 cut(s) 489, 810, 1206, 1379
SatI GCNGC 5 cut(s) 130, 133, 136, 139, 939
Sau3AI GATC 5 cut(s) 225, 399, 653, 836, 876
Sau96I GGNCC 1 cut(s) 1033
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 4 cut(s) 429, 831, 891, 1011
SfaNI GCATC 4 cut(s) 303, 346, 943, 1276
SfcI CTRYAG 1 cut(s) 1110
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 1 cut(s) 1033
SmiMI CAYNNNNRTG 2 cut(s) 342, 528
SmlI CTYRAG 1 cut(s) 1328
SmoI CTYRAG 1 cut(s) 1328
Sse9I AATT 2 cut(s) 1095, 1364
SsiI CCGC 7 cut(s) 135, 138, 141, 153, 825, 1052, 1233
SspI AATATT 1 cut(s) 1324
SspMI CTAG 3 cut(s) 552, 603, 908
SstI GAGCTC 2 cut(s) 429, 1011
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 602, 1071
TaaI ACNGT 5 cut(s) 74, 160, 1159, 1376, 1411
TaiI ACGT 1 cut(s) 615
TaqI TCGA 7 cut(s) 40, 224, 311, 457, 635, 668, 1305
TasI AATT 2 cut(s) 1095, 1364
TauI GCSGC 2 cut(s) 138, 141
TfiI GAWTC 4 cut(s) 289, 377, 844, 1262
Tru1I TTAA 4 cut(s) 489, 810, 1206, 1379
Tru9I TTAA 4 cut(s) 489, 810, 1206, 1379
TscAI CASTG 5 cut(s) 541, 667, 775, 781, 787
TseFI GTSAC 1 cut(s) 1294
TseI GCWGC 3 cut(s) 129, 132, 938
Tsp45I GTSAC 1 cut(s) 1294
TspDTI ATGAA 6 cut(s) 281, 474, 944, 1038, 1073, 1403
TspGWI ACGGA 2 cut(s) 311, 1323
TspRI CASTG 5 cut(s) 541, 667, 775, 781, 787
Van91I CCANNNNNTGG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 1033
XapI RAATTY 1 cut(s) 1095
XmaJI CCTAGG 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 3 cut(s) 552, 603, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.