Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016032

Physical Location & Seq

Genomic Coordinates Forward (+)

63749838 .. 63752350

Gene Structure 2513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTAGACATAGCTGTGCTAATGTGAACCTCAAAGCTAGTGCAACCCTTGATGAACTTCATATTGACCCAATGCTGGAGAGGTCTTTGCAAAACTGGTTTCACTCTCCGAATTTGCCTAAGCTGAGTCCTAGGCCACAGGTTGTTACCTCAAGAACCCAATCTACTTCATGTCCTAGCCGCGAGGGGTCATCCAGCGGTTCAAACCCTGCCACTGAACATCCACCATTTAACTTAAGTTCTGCTCAAGTACCACCACATGGATATGTGAAGCCTTCTGAGAAATCCTCTCGCTTTAGAAAGCCAAAGTGCTGCGACAACTTGTTGAAGCAACAAGTAGTGGAGAAAGATAATGCAAGGGGTGTGAGGAGGACAGGAAGTGAACATTTCCGTTCCAAGAATCTCAACGCAGAGAGGAAGAGAAGGACTAGAATTAAAGAAGGTGAACTTGCTTTACGTGCTCTAGTGCCAAAGATAACCAAGATGGATAGAGCGTCTATTCCAACAGATGCTATTGACTACATAAAAGAGTTGCAGCAGAAGGTGAAAGAACTAGAAGACGAGCTGAGGGAAATGGAAGAAGAAGACTCTGCAAAGAAGGAAGCAGATTTACAAGTTTCAGTGCTGGACAAGAAGACAGGAGGCAGCAACTGCTTGAGTTCTACAGTCCACAAGCAGATCTCCAGTTTTTCCCCAAAAAGTCCAACTGAGGTACATTTTAGTCTACAAAGTGCATTTGGAGGTGTACCAGCTGAGCAAAAAGAATGTTTGATTAAGTTGTTCTGTGAGCACAACCGAGGTGGGTTTACAAGGTTGATGGAGACTATGGATTGCTTAGGGCTTGAAGTAGTGGATGCCAATGTTACCACATTTGATAGAAATTCCCTAATCATTCTCAGAGTTGAGGCGAATGAGGATATTCAAGCAAAGAAATTGAGGAACATGCTAATCAAGCTAACAAGGGAGACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

324

Amino Acids

36.45

Weight (kDa)

9.03

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	133 - 179	5.9e-07	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	253 - 317	8.8e-09	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10610 AT1G10610 AT1G10610
fragaria_vesca	FvH4_4g34320
malus_domestica	MD16G1093900.v1.1
prunus_persica	Prupe.1G252600_v2.0.a1
pyrus_communis	pycom16g07990
rosa_chinensis	RchiOBHm_Chr4g0443741
rosa_laevigata	RLG00000005894
rosa_roxburghii	Rroxscaffold_5G00384310
rosa_samantha	Rh4AG407100 Rh4BG418000 Rh4CG432200 Rh4DG413300
rosa_wichuraiana	Rw4G034960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	724
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	181, 198
AcsI	RAATTY	2 cut(s)	112, 880
AfaI	GTAC	3 cut(s)	252, 714, 747
AfiI	CCNNNNNNNGG	2 cut(s)	76, 260
AflII	CTTAAG	1 cut(s)	235
AgsI	TTSAA	4 cut(s)	204, 328, 845, 923
AluBI	AGCT	6 cut(s)	15, 38, 124, 565, 752, 955
AluI	AGCT	6 cut(s)	15, 38, 124, 565, 752, 955
Alw21I	GWGCWC	2 cut(s)	463, 792
Alw26I	GTCTC	2 cut(s)	815, 959
AlwNI	CAGNNNCTG	1 cut(s)	651
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	312, 535, 645
ApoI	RAATTY	2 cut(s)	112, 880
AspA2I	CCTAGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	455, 556
AvrII	CCTAGG	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbsI	GAAGAC	3 cut(s)	564, 591, 641
Bbv12I	GWGCWC	2 cut(s)	463, 792
BbvCI	CCTCAGC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	299, 547, 657
BccI	CCATC	2 cut(s)	478, 811
BcoDI	GTCTC	2 cut(s)	815, 959
BfaI	CTAG	7 cut(s)	6, 39, 132, 177, 429, 464, 554
BfmI	CTRYAG	1 cut(s)	663
BfrI	CTTAAG	1 cut(s)	235
BglII	AGATCT	1 cut(s)	678
BisI	GCNGC	4 cut(s)	181, 313, 536, 646
BlnI	CCTAGG	1 cut(s)	131
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	4 cut(s)	182, 314, 537, 647
BmsI	GCATC	2 cut(s)	499, 844
BpiI	GAAGAC	3 cut(s)	564, 591, 641
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	2 cut(s)	98, 667
Bpu10I	CCTNAGC	3 cut(s)	120, 566, 835
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	3 cut(s)	136, 231, 676
BsaAI	YACGTR	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	131, 796
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 260
Bse1I	ACTGG	2 cut(s)	101, 684
BseDI	CCNNGG	2 cut(s)	131, 796
BseGI	GGATG	3 cut(s)	191, 220, 859
BseLI	CCNNNNNNNGG	2 cut(s)	76, 260
BseMII	CTCAG	6 cut(s)	116, 270, 557, 699, 744, 910
BseNI	ACTGG	2 cut(s)	101, 684
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	299, 547, 657
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	463, 792
BslI	CCNNNNNNNGG	2 cut(s)	76, 260
BsmAI	GTCTC	2 cut(s)	815, 959
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	463, 792
Bsp143I	GATC	1 cut(s)	678
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	2 cut(s)	181, 198
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	6 cut(s)	117, 271, 558, 700, 745, 909
BspFNI	CGCG	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	101, 684
BssECI	CCNNGG	2 cut(s)	131, 796
BssMI	GATC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	458
BstDEI	CTNAG	8 cut(s)	120, 125, 279, 566, 708, 753, 835, 896
BstF5I	GGATG	3 cut(s)	191, 220, 859
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	681
BstMAI	GTCTC	2 cut(s)	815, 959
BstMBI	GATC	1 cut(s)	678
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 651, 952
BstNSI	RCATGY	1 cut(s)	946
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	299, 547, 657
BstV2I	GAAGAC	3 cut(s)	564, 591, 641
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	191, 220, 859
BtsIMutI	CAGTG	2 cut(s)	213, 627
CaiI	CAGNNNCTG	1 cut(s)	651
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	3 cut(s)	251, 713, 746
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	3 cut(s)	171, 260, 943
CviQI	GTAC	3 cut(s)	251, 713, 746
DdeI	CTNAG	8 cut(s)	120, 125, 279, 566, 708, 753, 835, 896
DpnI	GATC	1 cut(s)	680
DpnII	GATC	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	174, 263, 946
FaiI	YATR	8 cut(s)	12, 63, 172, 261, 267, 524, 827, 944
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	3 cut(s)	170, 259, 942
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	4 cut(s)	181, 313, 536, 646
FokI	GGATG	3 cut(s)	178, 207, 866
Fsp4HI	GCNGC	4 cut(s)	181, 313, 536, 646
FspBI	CTAG	7 cut(s)	6, 39, 132, 177, 429, 464, 554
GluI	GCNGC	4 cut(s)	181, 313, 536, 646
GsuI	CTGGAG	2 cut(s)	98, 667
HaeIII	GGCC	1 cut(s)	136
HgaI	GACGC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	174, 263, 946
HinfI	GANTC	3 cut(s)	127, 400, 587
HphI	GGTGA	2 cut(s)	455, 556
Hpy166II	GTNNAC	7 cut(s)	28, 383, 446, 670, 725, 746, 807
Hpy188I	TCNGA	3 cut(s)	111, 280, 899
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	7 cut(s)	28, 383, 446, 670, 725, 746, 807
HpyAV	CCTTC	5 cut(s)	285, 417, 434, 535, 592
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	6 cut(s)	44, 91, 356, 535, 593, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 651, 952
HpyF3I	CTNAG	8 cut(s)	120, 125, 279, 566, 708, 753, 835, 896
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	174, 263, 946
Kzo9I	GATC	1 cut(s)	678
Lsp1109I	GCAGC	3 cut(s)	299, 547, 657
LweI	GCATC	2 cut(s)	499, 844
MaeI	CTAG	7 cut(s)	6, 39, 132, 177, 429, 464, 554
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	145, 862
MalI	GATC	1 cut(s)	680
MboI	GATC	1 cut(s)	678
MboII	GAAGA	6 cut(s)	430, 569, 590, 593, 596, 646
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	2 cut(s)	463, 792
MluCI	AATT	5 cut(s)	112, 432, 880, 932, 970
MlyI	GAGTC	2 cut(s)	136, 581
MmeI	TCCRAC	2 cut(s)	527, 728
MseI	TTAA	4 cut(s)	231, 236, 435, 774
MslI	CAYNNNNRTG	2 cut(s)	15, 264
MspA1I	CMGCKG	2 cut(s)	198, 752
MspCI	CTTAAG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	458, 651, 952
NdeII	GATC	1 cut(s)	678
NlaIII	CATG	3 cut(s)	174, 263, 946
NspI	RCATGY	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	182, 314, 537, 647
PleI	GAGTC	2 cut(s)	135, 581
PpsI	GAGTC	2 cut(s)	135, 581
Ppu21I	YACGTR	1 cut(s)	458
PsrI	GAACNNNNNNTAC	4 cut(s)	148, 180, 438, 470
PstNI	CAGNNNCTG	1 cut(s)	651
PsuI	RGATCY	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	252, 714, 747
RsaNI	GTAC	3 cut(s)	251, 713, 746
RseI	CAYNNNNRTG	2 cut(s)	15, 264
SaqAI	TTAA	4 cut(s)	231, 236, 435, 774
SatI	GCNGC	4 cut(s)	181, 313, 536, 646
Sau3AI	GATC	1 cut(s)	678
SchI	GAGTC	2 cut(s)	136, 581
SduI	GDGCHC	2 cut(s)	463, 792
SfaNI	GCATC	2 cut(s)	499, 844
SfcI	CTRYAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	15, 264
SmlI	CTYRAG	4 cut(s)	151, 235, 246, 655
SmoI	CTYRAG	4 cut(s)	151, 235, 246, 655
Sse9I	AATT	5 cut(s)	112, 432, 880, 932, 970
SsiI	CCGC	2 cut(s)	181, 198
SspMI	CTAG	7 cut(s)	6, 39, 132, 177, 429, 464, 554
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	1 cut(s)	460
TasI	AATT	5 cut(s)	112, 432, 880, 932, 970
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	4 cut(s)	231, 236, 435, 774
Tru9I	TTAA	4 cut(s)	231, 236, 435, 774
TscAI	CASTG	2 cut(s)	220, 627
TseI	GCWGC	3 cut(s)	312, 535, 645
TspDTI	ATGAA	3 cut(s)	50, 69, 159
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	2 cut(s)	220, 627
Van91I	CCANNNNNTGG	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	235
XapI	RAATTY	2 cut(s)	112, 880
XceI	RCATGY	1 cut(s)	946
XmaJI	CCTAGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	724
XspI	CTAG	7 cut(s)	6, 39, 132, 177, 429, 464, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.