Prupe.1G252600_v2.0.a1
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016032
Physical Location & Seq
Forward (+)
26368408 .. 26371360
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G252600.1

Sequence Viewer

Length: 1476 bp
ATGAGAAATTTGGAGGGAGTTGCTGAGTCGCTTAGACCCCTTGTTGAGTCCAAGCAATGGGACTATTGTGTTGTGTGGAAACTTGGCGATGATCCCTCTAGGTTTATTGAAATGATGGGTTGCTGTTGTGGTGGTGGGTATGAGTATGACTGTGTTAATGTCAAAGAGGAAGAAGGAGAGCCCCACTCTGCTAAACTTTGCAGGGATGGCTTCCTTAAGCACCCAATTAGGACAAAGGCTTGTGAGGCTCTTGCCCAGCTTCCTTCTTCTATGCCTCTCTACTCTGGGATTCATACGGAGGTGATCATATCAGCACAACCCAGGTGGCTTTGTGGTCATGTCAATGCCTCGAGTTCAAATCCTTCACAATCACACGACTTCGTTGGTACCCGAGTGTTGATCCCTGTGCTAAGTGACCTCATTGAGCTCTTTTCCACAAAGAATATTCCTGAAAATCAAAAGATGTTAGAGTTGTTTATGGCTCCATGCAATAACTCTTTAAAACAAGAACCCATGGCTACACATGACTATGTCAATGTGAACCTCAATGCCAGTGCAAGCCTTAATGAATTCCATGTTGATCCATTGCCAGAAGAGTGCCCAGAAAAGTTGTTACCTTCTTTGAATTTGGCAAACTTCATTCCCAGGCCACAAGTTTTCCCCTCATCAGCTTCCCAAACTACCTCCTGTCCTATCCTTGAGGGATCATCCAGCGGTTCAAATCCTTCGAGTGAACATCCATTGTTATCTTCGCGCTCTAGAAAGTCCAAGCGTGGTGATAACTTGTTGCAGCAACAGGCAGGCTTGGCTTCTGGCAGTGGCAGTGTAGTAGAGAAACATAAGGCAAAGGTGACCAGGAAGACAGGAAGCGGGCAGTACCAATCCAAGAATCTTTTCGCAGAGAGGAATAGGAGGAGCAGGATTAAAGATGGGCACTTTGCTCTACGAGCTCTAGTCCCGAAGATAAGCAAGATGGATATACCTGCTATTATAGGAGATGCTGTTGAATATATTGAAGAGTTAAAGAAGAAGGTGAAAGAACTTGAAGATGAGCTCAGGGAAATCGAAGAGGAGGAGGACTTGACAAAGAACAAAGCAGATGTGAAAATTCTGGCCTCAGACATGAGAAAAGAAGGCAGCATTTGCTTGATTTCTACAGAGCACAAACAGGGTTCCTCAAGTTTTGTTCAAAAGAGTCCAACAGTGGTGCAAGTGGAAGTGAACCAGATTGGCAAAAGAGATTGTTTGATTAAGTTGTTCTATGAGCAGAGCCGAGGCGGGTTTGCAAGTTTGATGGAGAATATGGATTCTTTAGGGCTTCAAGTAGTTGATGCCAATGTTACCACATTTGACGGAAATGTCCTAAACATCCTTAAGGTTCAGGCAAACAGAGACATTCAGGCAAAGAAATTGAGAGACAAGTTGATCCAGCTAACACGGGAGACAAATCAGACAGTTCACAAAGGCATAAATTGA

Protein Analysis

492

Amino Acids

54.53

Weight (kDa)

6.66

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10610 AT1G10610 AT1G10610
fragaria_vesca FvH4_4g34320
malus_domestica MD16G1093900.v1.1
prunus_persica Prupe.1G252600_v2.0.a1
pyrus_communis pycom16g07990
rosa_chinensis RchiOBHm_Chr4g0443741
rosa_laevigata RLG00000005894
rosa_roxburghii Rroxscaffold_5G00384310
rosa_samantha Rh4AG407100 Rh4BG418000 Rh4CG432200 Rh4DG413300
rosa_wichuraiana Rw4G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1358
Acc36I ACCTGC 1 cut(s) 991
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 57
AccII CGCG 1 cut(s) 754
AciI CCGC 3 cut(s) 714, 870, 1278
AclWI GGATC 5 cut(s) 86, 394, 575, 712, 1420
AcsI RAATTY 4 cut(s) 7, 569, 625, 1107
AfaI GTAC 2 cut(s) 388, 878
AfiI CCNNNNNNNGG 1 cut(s) 57
AflII CTTAAG 2 cut(s) 215, 1373
AgsI TTSAA 9 cut(s) 110, 357, 625, 720, 1007, 1016, 1046, 1190, 1322
AjnI CCWGG 3 cut(s) 320, 644, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AluBI AGCT 6 cut(s) 259, 427, 671, 950, 1054, 1432
AluI AGCT 6 cut(s) 259, 427, 671, 950, 1054, 1432
Alw21I GWGCWC 4 cut(s) 429, 952, 1056, 1164
Alw26I GTCTC 3 cut(s) 1386, 1410, 1436
AlwI GGATC 5 cut(s) 86, 394, 575, 712, 1420
Ama87I CYCGRG 2 cut(s) 349, 390
AoxI GGCC 2 cut(s) 647, 1113
ApeKI GCWGC 2 cut(s) 790, 1137
ApoI RAATTY 4 cut(s) 7, 569, 625, 1107
Asp700I GAANNNNTTC 1 cut(s) 893
Asp718I GGTACC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 756
AsuHPI GGTGA 4 cut(s) 313, 788, 862, 1045
AvaI CYCGRG 2 cut(s) 349, 390
BaeGI GKGCMC 2 cut(s) 602, 936
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 4 cut(s) 183, 429, 952, 1056
BbsI GAAGAC 1 cut(s) 866
Bbv12I GWGCWC 4 cut(s) 429, 952, 1056, 1164
BbvI GCAGC 2 cut(s) 802, 1149
BccI CCATC 5 cut(s) 109, 200, 923, 967, 1288
BciT130I CCWGG 3 cut(s) 322, 646, 856
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 1386, 1410, 1436
BfaI CTAG 3 cut(s) 99, 759, 953
BfmI CTRYAG 1 cut(s) 1155
BfrI CTTAAG 2 cut(s) 215, 1373
BfuAI ACCTGC 1 cut(s) 991
BisI GCNGC 2 cut(s) 791, 1138
BlsI GCNGC 2 cut(s) 792, 1139
Bme1390I CCNGG 3 cut(s) 322, 646, 856
BmeT110I CYCGRG 2 cut(s) 349, 390
BmiI GGNNCC 3 cut(s) 388, 483, 1174
BmrFI CCNGG 3 cut(s) 322, 646, 856
BmsI GCATC 2 cut(s) 988, 1321
BpiI GAAGAC 1 cut(s) 866
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 1055
BpuEI CTTGAG 2 cut(s) 719, 1162
BsaJI CCNNGG 4 cut(s) 320, 513, 644, 1273
BsaXI ACNNNNNCTCC 2 cut(s) 987, 1017
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 2 cut(s) 62, 584
BseBI CCWGG 3 cut(s) 322, 646, 856
BseDI CCNNGG 4 cut(s) 320, 513, 644, 1273
BseGI GGATG 4 cut(s) 211, 707, 736, 1368
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 2 cut(s) 62, 584
BseMII CTCAG 3 cut(s) 15, 1069, 1131
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 3 cut(s) 928, 1085, 1088
BseSI GKGCMC 2 cut(s) 602, 936
BseXI GCAGC 2 cut(s) 802, 1149
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 754
BshFI GGCC 2 cut(s) 649, 1115
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 4 cut(s) 429, 952, 1056, 1164
BsiHKCI CYCGRG 2 cut(s) 349, 390
BslFI GGGAC 2 cut(s) 74, 941
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 3 cut(s) 1386, 1410, 1436
BsmFI GGGAC 2 cut(s) 74, 941
BsnI GGCC 2 cut(s) 649, 1115
BsoBI CYCGRG 2 cut(s) 349, 390
Bsp1286I GDGCHC 7 cut(s) 183, 429, 602, 936, 952, 1056, 1164
Bsp143I GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 3 cut(s) 714, 870, 1278
BspANI GGCC 2 cut(s) 649, 1115
BspCNI CTCAG 3 cut(s) 16, 1068, 1130
BspFNI CGCG 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 388, 483, 1174
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 5 cut(s) 86, 394, 575, 712, 1420
BspT107I GGYRCC 1 cut(s) 386
BspTI CTTAAG 2 cut(s) 215, 1373
BsrDI GCAATG 2 cut(s) 62, 584
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 4 cut(s) 320, 513, 644, 1273
BssMI GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 322, 646, 856
Bst4CI ACNGT 3 cut(s) 152, 1204, 1456
Bst6I CTCTTC 3 cut(s) 588, 1011, 1062
BstAFI CTTAAG 2 cut(s) 215, 1373
BstAPI GCANNNNNTGC 1 cut(s) 1143
BstC8I GCNNGC 3 cut(s) 559, 802, 872
BstDEI CTNAG 5 cut(s) 24, 32, 410, 1055, 1117
BstDSI CCRYGG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 850
BstF5I GGATG 4 cut(s) 211, 707, 736, 1368
BstFNI CGCG 1 cut(s) 754
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 6 cut(s) 94, 306, 402, 583, 707, 1428
BstMAI GTCTC 3 cut(s) 1386, 1410, 1436
BstMBI GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
BstMWI GCNNNNNNNGC 5 cut(s) 207, 245, 806, 947, 1143
BstNI CCWGG 3 cut(s) 322, 646, 856
BstPI GGTNACC 1 cut(s) 850
BstSCI CCNGG 3 cut(s) 320, 644, 854
BstSFI CTRYAG 1 cut(s) 1155
BstSLI GKGCMC 2 cut(s) 602, 936
BstUI CGCG 1 cut(s) 754
BstV1I GCAGC 2 cut(s) 802, 1149
BstV2I GAAGAC 1 cut(s) 866
BsuRI GGCC 2 cut(s) 649, 1115
BtgI CCRYGG 1 cut(s) 513
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 4 cut(s) 211, 707, 736, 1368
BtsI GCAGTG 2 cut(s) 823, 829
BtsIMutI CAGTG 4 cut(s) 559, 823, 829, 1209
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 3 cut(s) 559, 802, 872
CfoI GCGC 1 cut(s) 756
Csp6I GTAC 2 cut(s) 387, 877
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 6 cut(s) 338, 486, 514, 524, 575, 1123
CviQI GTAC 2 cut(s) 387, 877
DdeI CTNAG 5 cut(s) 24, 32, 410, 1055, 1117
DpnI GATC 6 cut(s) 93, 305, 401, 582, 706, 1427
DpnII GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
DraI TTTAAA 1 cut(s) 501
DrdI GACNNNNNNGTC 1 cut(s) 1358
DseDI GACNNNNNNGTC 1 cut(s) 1358
Eam1104I CTCTTC 3 cut(s) 588, 1011, 1062
EarI CTCTTC 3 cut(s) 588, 1011, 1062
Ecl136II GAGCTC 3 cut(s) 427, 950, 1054
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 4 cut(s) 183, 429, 952, 1056
Eco53kI GAGCTC 3 cut(s) 427, 950, 1054
Eco88I CYCGRG 2 cut(s) 349, 390
Eco91I GGTNACC 1 cut(s) 850
EcoICRI GAGCTC 3 cut(s) 427, 950, 1054
EcoO65I GGTNACC 1 cut(s) 850
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 320, 644, 854
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 4 cut(s) 183, 429, 952, 1056
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 6 cut(s) 341, 489, 517, 527, 578, 1126
FaqI GGGAC 2 cut(s) 74, 941
FatI CATG 6 cut(s) 337, 485, 513, 523, 574, 1122
FauI CCCGC 2 cut(s) 863, 1271
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 791, 1138
FokI GGATG 4 cut(s) 218, 694, 723, 1355
FriOI GRGCYC 4 cut(s) 183, 429, 952, 1056
Fsp4HI GCNGC 2 cut(s) 791, 1138
FspBI CTAG 3 cut(s) 99, 759, 953
GlaI GCGC 1 cut(s) 755
GluI GCNGC 2 cut(s) 791, 1138
GsaI CCCAGC 1 cut(s) 259
HaeIII GGCC 2 cut(s) 649, 1115
HhaI GCGC 1 cut(s) 756
Hin1II CATG 6 cut(s) 341, 489, 517, 527, 578, 1126
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HinfI GANTC 6 cut(s) 26, 47, 289, 889, 1195, 1307
HphI GGTGA 4 cut(s) 313, 788, 862, 1045
Hpy166II GTNNAC 4 cut(s) 541, 734, 1222, 1459
Hpy188I TCNGA 2 cut(s) 1120, 1452
Hpy188III TCNNGA 3 cut(s) 449, 759, 958
Hpy8I GTNNAC 4 cut(s) 541, 734, 1222, 1459
HpyAV CCTTC 7 cut(s) 167, 273, 372, 627, 735, 1024, 1127
HpyCH4III ACNGT 3 cut(s) 152, 1204, 1456
HpyCH4V TGCA 6 cut(s) 201, 489, 557, 790, 1210, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 245, 806, 947, 1143
HpyF3I CTNAG 5 cut(s) 24, 32, 410, 1055, 1117
Hsp92II CATG 6 cut(s) 341, 489, 517, 527, 578, 1126
HspAI GCGC 1 cut(s) 754
KpnI GGTACC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
LmnI GCTCC 2 cut(s) 487, 915
Lsp1109I GCAGC 2 cut(s) 802, 1149
LweI GCATC 2 cut(s) 988, 1321
MaeI CTAG 3 cut(s) 99, 759, 953
MaeIII GTNAC 4 cut(s) 413, 612, 850, 1339
MalI GATC 6 cut(s) 93, 305, 401, 582, 706, 1427
MboI GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
MhlI GDGCHC 7 cut(s) 183, 429, 602, 936, 952, 1056, 1164
MluCI AATT 7 cut(s) 7, 225, 569, 625, 1107, 1409, 1471
MlyI GAGTC 3 cut(s) 35, 56, 1204
MmeI TCCRAC 1 cut(s) 1223
MroXI GAANNNNTTC 1 cut(s) 893
MseI TTAA 8 cut(s) 156, 216, 500, 564, 924, 1022, 1251, 1374
MslI CAYNNNNRTG 2 cut(s) 342, 528
MspA1I CMGCKG 1 cut(s) 714
MspCI CTTAAG 2 cut(s) 215, 1373
MspR9I CCNGG 3 cut(s) 322, 646, 856
MvaI CCWGG 3 cut(s) 322, 646, 856
MvnI CGCG 1 cut(s) 754
MwoI GCNNNNNNNGC 5 cut(s) 207, 245, 806, 947, 1143
NcoI CCATGG 1 cut(s) 513
NdeII GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
NlaIII CATG 6 cut(s) 341, 489, 517, 527, 578, 1126
NlaIV GGNNCC 3 cut(s) 388, 483, 1174
NmeAIII GCCGAG 1 cut(s) 1298
NmuCI GTSAC 2 cut(s) 413, 850
PaeR7I CTCGAG 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 3 cut(s) 289, 889, 1307
PflFI GACNNNGTC 1 cut(s) 530
PflMI CCANNNNNTGG 1 cut(s) 57
PkrI GCNGC 2 cut(s) 792, 1139
PleI GAGTC 3 cut(s) 34, 55, 1203
PpsI GAGTC 3 cut(s) 34, 55, 1203
Psp124BI GAGCTC 3 cut(s) 429, 952, 1056
Psp6I CCWGG 3 cut(s) 320, 644, 854
PspEI GGTNACC 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 255
PspGI CCWGG 3 cut(s) 320, 644, 854
PspN4I GGNNCC 3 cut(s) 388, 483, 1174
PspXI VCTCGAGB 1 cut(s) 349
PsyI GACNNNGTC 1 cut(s) 530
RsaI GTAC 2 cut(s) 388, 878
RsaNI GTAC 2 cut(s) 387, 877
RseI CAYNNNNRTG 2 cut(s) 342, 528
SacI GAGCTC 3 cut(s) 429, 952, 1056
SaqAI TTAA 8 cut(s) 156, 216, 500, 564, 924, 1022, 1251, 1374
SatI GCNGC 2 cut(s) 791, 1138
Sau3AI GATC 6 cut(s) 91, 303, 399, 580, 704, 1425
SchI GAGTC 3 cut(s) 35, 56, 1204
ScrFI CCNGG 3 cut(s) 322, 646, 856
SduI GDGCHC 7 cut(s) 183, 429, 602, 936, 952, 1056, 1164
SfaNI GCATC 2 cut(s) 988, 1321
SfcI CTRYAG 1 cut(s) 1155
Sfr274I CTCGAG 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 342, 528
SmlI CTYRAG 5 cut(s) 215, 349, 698, 1177, 1373
SmoI CTYRAG 5 cut(s) 215, 349, 698, 1177, 1373
Sse9I AATT 7 cut(s) 7, 225, 569, 625, 1107, 1409, 1471
SsiI CCGC 3 cut(s) 714, 870, 1278
SspI AATATT 1 cut(s) 445
SspMI CTAG 3 cut(s) 99, 759, 953
SstI GAGCTC 3 cut(s) 429, 952, 1056
StyD4I CCNGG 3 cut(s) 320, 644, 854
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 152, 1204, 1456
TaqI TCGA 3 cut(s) 350, 728, 1065
TasI AATT 7 cut(s) 7, 225, 569, 625, 1107, 1409, 1471
TfiI GAWTC 3 cut(s) 289, 889, 1307
Tru1I TTAA 8 cut(s) 156, 216, 500, 564, 924, 1022, 1251, 1374
Tru9I TTAA 8 cut(s) 156, 216, 500, 564, 924, 1022, 1251, 1374
TscAI CASTG 4 cut(s) 559, 823, 829, 1209
TseFI GTSAC 2 cut(s) 413, 850
TseI GCWGC 2 cut(s) 790, 1137
Tsp45I GTSAC 2 cut(s) 413, 850
TspDTI ATGAA 3 cut(s) 281, 582, 628
TspGWI ACGGA 2 cut(s) 311, 1368
TspRI CASTG 4 cut(s) 559, 823, 829, 1209
Tth111I GACNNNGTC 1 cut(s) 530
Van91I CCANNNNNTGG 1 cut(s) 57
Vha464I CTTAAG 2 cut(s) 215, 1373
XapI RAATTY 4 cut(s) 7, 569, 625, 1107
XbaI TCTAGA 1 cut(s) 758
XhoI CTCGAG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 3 cut(s) 99, 759, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.