Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012928

Physical Location & Seq

Genomic Coordinates Reverse (-)

3750066 .. 3752780

Gene Structure 2715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCATCGGCTTTTAGATCATCCACGAGGTTGATTCTTGTATTAGGTATACTGATTTTGTGTTCGGTTTCTTCTGTCCGAAGCTGGAGCAAAGAAGGTCATATTCTTACTTGTAGAATTGCTCAGAATCTTTTAGAAGCCGGACCAGCACATGTAGTAGAGAATCTGTTACCGGATTACGTGAAAGGAGATTTATCAGCATTGTGTGTGTGGCCTGACCAGATCCGACATTGGTACAAGTATCGTTGGACCAGCCATCTCCATTACATCGACACTCCCGACCAAGCCTGCTCTTACGAATACTCTAGGGATTGTCATGATCAACATGGATTGAAGGATATGTGTGTGGATGGAGCAATCCAGAATTTCACGTCTCAGCTTCAGCATTACGGTGAAGGAACATCTGATCGTAGATATAACATGACCGAAGCCCTTTTGTTCTTGTCTCATTTCATGGGAGATATTCATCAGCCGATGCATGTGGGATTCACAAGTGATGAAGGAGGAAACACGATAGATTTACGTTGGTACAAACACAAATCCAATCTACATCATGTATGGGATAGAGAGATCATTCTCACGGCTCTAAAAGAAAACTACGACAAGAACTTGGATCTTCTCCAAGAGGATCTTGAGAAGAACATCACCAATGGATTATGGCACGACGATCTATCTTCGTGGACAGAATGCAACGATCTTATCGCTTGTCCACACAAGTATGCTTCAGAGAGTATAAAGTTAGCTTGTAAATGGGGATACAAAGGCGTCAAGTCTGGTGAAACGTTATCAGAAGAATATTTCAATACAAGGTTGCCAATAGTGATGAAGAGAATAGTTCAGGGAGGAGTTAGACTAGCCATGATACTAAACCGGGTTTTTAGTGACGATCATGCTATTGCTGGTGTTGCTGCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004521 GO:0004536 GO:0004540 GO:0005575 GO:0005576 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0010150 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043765 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048366 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0080187 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0090567 GO:0090693 GO:0099402 GO:0140097 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

S1-P1_nuclease

Protein Analysis

305

Amino Acids

34.88

Weight (kDa)

6.08

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	29 - 293	1.2e-87	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012928)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11190
fragaria_vesca	FvH4_3g04360 FvH4_3g04360
malus_domestica	MD05G1323600.v1.1 MD10G1079400.v1.1 MD10G1301500.v1.1
prunus_persica	Prupe.4G038900_v2.0.a1
pyrus_communis	pycom10g25420
rosa_chinensis	RchiOBHm_Chr5g0006751
rosa_laevigata	RLG00000031425
rosa_multiflora	Rmu_sc0001044.1_g000042
rosa_roxburghii	Rroxscaffold_1G00069290
rosa_rugosa	Rorug04G0424200
rosa_samantha	Rh5AG052100 Rh5BG051000 Rh5CG059600 Rh5DG050100
rosa_wichuraiana	Rw5G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	782
AclWI	GGATC	3 cut(s)	217, 621, 636
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	2 cut(s)	365, 708
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	2 cut(s)	236, 530
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	334, 802
AjiI	CACGTC	1 cut(s)	372
AluBI	AGCT	3 cut(s)	84, 379, 743
AluI	AGCT	3 cut(s)	84, 379, 743
Alw26I	GTCTC	2 cut(s)	378, 450
AlwI	GGATC	3 cut(s)	217, 621, 636
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	143, 249
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	3 cut(s)	404, 637, 788
AvaII	GGWCC	2 cut(s)	143, 249
BauI	CACGAG	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	895
BccI	CCATC	2 cut(s)	264, 344
BceAI	ACGGC	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	749
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	2 cut(s)	378, 450
BfaI	CTAG	2 cut(s)	306, 854
BfuI	GTATCC	1 cut(s)	749
BisI	GCNGC	1 cut(s)	909
BlsI	GCNGC	1 cut(s)	910
Bme1390I	CCNGG	1 cut(s)	872
Bme18I	GGWCC	2 cut(s)	143, 249
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	143, 249
BmrFI	CCNGG	1 cut(s)	872
BmsI	GCATC	2 cut(s)	14, 465
BpmI	CTGGAG	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	872
BsaAI	YACGTR	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	465
BseGI	GGATG	2 cut(s)	20, 355
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	137, 389
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	1 cut(s)	895
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	3 cut(s)	141, 173, 871
BsmAI	GTCTC	2 cut(s)	378, 450
BsmBI	CGTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	2 cut(s)	136, 388
BspHI	TCATGA	1 cut(s)	316
BspPI	GGATC	3 cut(s)	217, 621, 636
BssNAI	GTATAC	1 cut(s)	50
BssNI	GRCGYC	1 cut(s)	765
BssSI	CACGAG	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	821
BstACI	GRCGYC	1 cut(s)	765
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	123, 375
BstF5I	GGATG	2 cut(s)	20, 355
BstMAI	GTCTC	2 cut(s)	378, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 905
BstNSI	RCATGY	2 cut(s)	155, 482
BstSCI	CCNGG	1 cut(s)	870
BstV1I	GCAGC	1 cut(s)	895
BstX2I	RGATCY	3 cut(s)	222, 613, 628
BstYI	RGATCY	3 cut(s)	222, 613, 628
BstZ17I	GTATAC	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	20, 355
Cac8I	GCNNGC	1 cut(s)	289
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	143, 249
CseI	GACGC	1 cut(s)	754
Csp6I	GTAC	2 cut(s)	235, 529
CviAII	CATG	9 cut(s)	152, 317, 326, 421, 454, 479, 554, 859, 890
CviQI	GTAC	2 cut(s)	235, 529
DdeI	CTNAG	2 cut(s)	123, 375
Eam1104I	CTCTTC	1 cut(s)	821
EarI	CTCTTC	1 cut(s)	821
Eco47I	GGWCC	2 cut(s)	143, 249
Eco57I	CTGAAG	2 cut(s)	365, 708
EcoT22I	ATGCAT	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	9 cut(s)	155, 320, 329, 424, 457, 482, 557, 862, 893
FalI	AAGNNNNNCTT	2 cut(s)	615, 647
FatI	CATG	9 cut(s)	151, 316, 325, 420, 453, 478, 553, 858, 889
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	909
FokI	GGATG	2 cut(s)	7, 362
Fsp4HI	GCNGC	1 cut(s)	909
FspBI	CTAG	2 cut(s)	306, 854
GluI	GCNGC	1 cut(s)	909
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	3 cut(s)	141, 173, 871
HgaI	GACGC	1 cut(s)	754
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	9 cut(s)	155, 320, 329, 424, 457, 482, 557, 862, 893
HinfI	GANTC	4 cut(s)	34, 127, 163, 486
HpaII	CCGG	3 cut(s)	141, 173, 871
HphI	GGTGA	3 cut(s)	404, 637, 788
Hpy166II	GTNNAC	3 cut(s)	50, 681, 710
Hpy188I	TCNGA	6 cut(s)	80, 126, 227, 406, 727, 790
Hpy188III	TCNNGA	4 cut(s)	278, 317, 361, 632
Hpy8I	GTNNAC	3 cut(s)	50, 681, 710
Hpy99I	CGWCG	1 cut(s)	668
HpyAV	CCTTC	4 cut(s)	89, 328, 389, 494
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	4 cut(s)	180, 371, 523, 782
HpyCH4V	TGCA	2 cut(s)	478, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 905
HpyF3I	CTNAG	2 cut(s)	123, 375
HpySE526I	ACGT	4 cut(s)	180, 371, 523, 782
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	9 cut(s)	155, 320, 329, 424, 457, 482, 557, 862, 893
Ksp22I	TGATCA	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	87, 353
Lsp1109I	GCAGC	1 cut(s)	895
LweI	GCATC	2 cut(s)	14, 465
MaeI	CTAG	2 cut(s)	306, 854
MaeII	ACGT	4 cut(s)	180, 371, 523, 782
MaeIII	GTNAC	2 cut(s)	168, 881
MboII	GAAGA	6 cut(s)	63, 608, 649, 666, 803, 838
MflI	RGATCY	3 cut(s)	222, 613, 628
MluCI	AATT	2 cut(s)	117, 364
MmeI	TCCRAC	2 cut(s)	227, 250
MnlI	CCTC	4 cut(s)	21, 497, 619, 836
Mph1103I	ATGCAT	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	390, 717
MspI	CCGG	3 cut(s)	141, 173, 871
MspR9I	CCNGG	1 cut(s)	872
Mva1269I	GAATGC	1 cut(s)	692
MwoI	GCNNNNNNNGC	2 cut(s)	146, 905
NciI	CCSGG	1 cut(s)	872
NlaIII	CATG	9 cut(s)	155, 320, 329, 424, 457, 482, 557, 862, 893
NmuCI	GTSAC	1 cut(s)	881
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	2 cut(s)	155, 482
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	34, 127, 163, 486
PkrI	GCNGC	1 cut(s)	910
Ppu21I	YACGTR	1 cut(s)	181
PscI	ACATGT	1 cut(s)	151
Psp1406I	AACGTT	1 cut(s)	782
PspPI	GGNCC	2 cut(s)	143, 249
PsuI	RGATCY	3 cut(s)	222, 613, 628
RsaI	GTAC	2 cut(s)	236, 530
RsaNI	GTAC	2 cut(s)	235, 529
RseI	CAYNNNNRTG	2 cut(s)	390, 717
SatI	GCNGC	1 cut(s)	909
Sau96I	GGNCC	2 cut(s)	143, 249
ScrFI	CCNGG	1 cut(s)	872
SfaNI	GCATC	2 cut(s)	14, 465
SinI	GGWCC	2 cut(s)	143, 249
SmiMI	CAYNNNNRTG	2 cut(s)	390, 717
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	2 cut(s)	117, 364
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	2 cut(s)	306, 854
StyD4I	CCNGG	1 cut(s)	870
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	4 cut(s)	183, 374, 526, 785
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	2 cut(s)	117, 364
TfiI	GAWTC	4 cut(s)	34, 127, 163, 486
TseFI	GTSAC	1 cut(s)	881
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	1 cut(s)	881
TspDTI	ATGAA	4 cut(s)	442, 455, 513, 839
VpaK11BI	GGWCC	2 cut(s)	143, 249
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	2 cut(s)	155, 482
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	2 cut(s)	306, 854
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.