Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016573

Physical Location & Seq

Genomic Coordinates Forward (+)

3847220 .. 3849224

Gene Structure 2005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTTCCTTCACAACAACTTCTTCTTCCTCGCTTCTCCTCAAAACTCTTCTCCCCGTAAGCCACCTGAATCGTTTCTCTACACTCTCTGGTATCCGCGTTGGCGATTCATGGACTCCTCTGCTCCGGAACATCTCCACCGCTGGGTCTCGGCGTCGAGTGGCGATTGTGAAAGCTGCGACGGTGGATTCGGATTACTCGTCGAAACGGAGCAATAGCAATGAGCAGAGAGAGACGATTATGCTTCCTGGTTGCGATTACAATCATTGGCTCATTGTAATGGAGTTTCCTAAAGATCCAGCGCCAAGTAGGGATCAGATGATTGATACTTACCTTAACACTCTTGCTACTGTTCTTGGCAGCATGGAAGAGGCGAAGAAGAACATGTATGCATTCAGTACCACGACATATACTGGATTCCAATGCACCATCGACGAAGAAACATCTGAGAAGTTCAAGGGTTTGCCTGGAGTTCTCTGGGTCTTGCCTGACTCCTACATAGATGTCAAGAACAAAGACTATGGAGGCGACAAGTACATCAATGGAGAGATTATCCCGTGCACATACCCAACATACCAACCAAAGCAGCGCAATAACACTAAGTATCAAAGTAAGAGATACGAAAGAAAAAGAGACGGTCCTCCACCTCCTGAACAGAGGAAACCAAGACAAGAACCAGCAGCCTCTGATTCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016070 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.2

Weight (kDa)

8.99

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	87 - 179	2.1e-42	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11430
fragaria_vesca	FvH4_3g21470 FvH4_3g21470
malus_domestica	MD03G1215700.v1.1 MD11G1230300.v1.1
prunus_persica	Prupe.4G197100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036911
rosa_laevigata	RLG00000033733
rosa_roxburghii	Rroxscaffold_1G00044050
rosa_rugosa	Rorug05G0158700
rosa_samantha	Rh5AG251200 Rh5BG252700 Rh5CG285200
rosa_wichuraiana	Rw5G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	2 cut(s)	97, 141
AclWI	GGATC	2 cut(s)	290, 321
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	2 cut(s)	400, 536
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	247, 466
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	563
Alw26I	GTCTC	3 cut(s)	153, 227, 627
Alw44I	GTGCAC	1 cut(s)	559
AlwI	GGATC	2 cut(s)	290, 321
AlwNI	CAGNNNCTG	1 cut(s)	686
Aor13HI	TCCGGA	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	559
ApeKI	GCWGC	4 cut(s)	176, 360, 586, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	304, 591
AspS9I	GGNCC	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	638
BaeGI	GKGCMC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	4 cut(s)	163, 372, 598, 692
BccI	CCATC	1 cut(s)	437
BciT130I	CCWGG	2 cut(s)	249, 468
BciVI	GTATCC	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	153, 227, 627
BfoI	RGCGCY	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	4 cut(s)	177, 361, 587, 681
BlsI	GCNGC	4 cut(s)	178, 362, 588, 682
Bme1390I	CCNGG	2 cut(s)	249, 468
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmrFI	CCNGG	2 cut(s)	249, 468
BpmI	CTGGAG	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	249, 468
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	29, 108
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	4 cut(s)	163, 372, 598, 692
BseYI	CCCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	3 cut(s)	153, 227, 627
BsmBI	CGTCTC	2 cut(s)	227, 627
BsmI	GAATGC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	295, 313
BspACI	CCGC	2 cut(s)	97, 141
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	290, 321
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	295, 313
BssNI	GRCGYC	1 cut(s)	154
Bst2UI	CCWGG	2 cut(s)	249, 468
Bst4CI	ACNGT	3 cut(s)	184, 352, 638
Bst6I	CTCTTC	2 cut(s)	54, 363
BstACI	GRCGYC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	447, 600
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	304, 591
BstKTI	GATC	2 cut(s)	298, 316
BstMAI	GTCTC	3 cut(s)	153, 227, 627
BstMBI	GATC	2 cut(s)	295, 313
BstNI	CCWGG	2 cut(s)	249, 468
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	247, 466
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	163, 372, 598, 692
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	104
CaiI	CAGNNNCTG	1 cut(s)	686
CfoI	GCGC	2 cut(s)	304, 591
Cfr13I	GGNCC	1 cut(s)	638
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	399, 535
CviAII	CATG	3 cut(s)	111, 364, 385
CviJI	RGCY	5 cut(s)	5, 63, 176, 271, 683
CviKI_1	RGCY	5 cut(s)	5, 63, 176, 271, 683
CviQI	GTAC	2 cut(s)	399, 535
DdeI	CTNAG	2 cut(s)	447, 600
DpnI	GATC	2 cut(s)	297, 315
DpnII	GATC	2 cut(s)	295, 313
Eam1104I	CTCTTC	2 cut(s)	54, 363
EarI	CTCTTC	2 cut(s)	54, 363
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	638
EcoRII	CCWGG	2 cut(s)	247, 466
EcoT22I	ATGCAT	1 cut(s)	394
Esp3I	CGTCTC	2 cut(s)	227, 627
FaeI	CATG	3 cut(s)	114, 367, 388
FatI	CATG	3 cut(s)	110, 363, 384
Fnu4HI	GCNGC	4 cut(s)	177, 361, 587, 681
Fsp4HI	GCNGC	4 cut(s)	177, 361, 587, 681
GlaI	GCGC	2 cut(s)	303, 590
GluI	GCNGC	4 cut(s)	177, 361, 587, 681
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	305
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	304, 591
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	114, 367, 388
Hin6I	GCGC	2 cut(s)	302, 589
HinP1I	GCGC	2 cut(s)	302, 589
HinfI	GANTC	7 cut(s)	70, 107, 115, 188, 417, 491, 689
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	561
Hpy188I	TCNGA	4 cut(s)	193, 318, 448, 688
Hpy188III	TCNNGA	3 cut(s)	127, 508, 650
Hpy8I	GTNNAC	1 cut(s)	561
Hpy99I	CGWCG	4 cut(s)	159, 184, 205, 437
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	3 cut(s)	184, 352, 638
HpyCH4V	TGCA	3 cut(s)	392, 426, 561
HpyF3I	CTNAG	2 cut(s)	447, 600
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	114, 367, 388
HspAI	GCGC	2 cut(s)	302, 589
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	295, 313
LmnI	GCTCC	2 cut(s)	129, 210
Lsp1109I	GCAGC	4 cut(s)	163, 372, 598, 692
MalI	GATC	2 cut(s)	297, 315
MboI	GATC	2 cut(s)	295, 313
MboII	GAAGA	7 cut(s)	15, 18, 41, 380, 388, 391, 449
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	109, 485
MnlI	CCTC	9 cut(s)	40, 50, 129, 364, 518, 651, 651, 657, 694
Mph1103I	ATGCAT	1 cut(s)	394
MroI	TCCGGA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	336, 697
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	249, 468
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	2 cut(s)	249, 468
MvnI	CGCG	1 cut(s)	99
NdeII	GATC	2 cut(s)	295, 313
NlaIII	CATG	3 cut(s)	114, 367, 388
NmeAIII	GCCGAG	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	1 cut(s)	388
PciI	ACATGT	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	5 cut(s)	70, 107, 188, 417, 689
PkrI	GCNGC	4 cut(s)	178, 362, 588, 682
PleI	GAGTC	2 cut(s)	109, 485
PpsI	GAGTC	2 cut(s)	109, 485
PscI	ACATGT	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	247, 466
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	247, 466
PspPI	GGNCC	1 cut(s)	638
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	400, 536
RsaNI	GTAC	2 cut(s)	399, 535
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	336, 697
SatI	GCNGC	4 cut(s)	177, 361, 587, 681
Sau3AI	GATC	2 cut(s)	295, 313
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	2 cut(s)	109, 485
ScrFI	CCNGG	2 cut(s)	249, 468
SduI	GDGCHC	1 cut(s)	563
SetI	ASST	4 cut(s)	69, 178, 336, 649
SinI	GGWCC	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	278
SsiI	CCGC	2 cut(s)	97, 141
StyD4I	CCNGG	2 cut(s)	247, 466
TaaI	ACNGT	3 cut(s)	184, 352, 638
TaqI	TCGA	3 cut(s)	157, 203, 432
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	5 cut(s)	70, 107, 188, 417, 689
Tru1I	TTAA	2 cut(s)	336, 697
Tru9I	TTAA	2 cut(s)	336, 697
TseI	GCWGC	4 cut(s)	176, 360, 586, 680
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	223
VneI	GTGCAC	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	638
XceI	RCATGY	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.