Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016573

Physical Location & Seq

Genomic Coordinates Reverse (-)

29622733 .. 29624829

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1215700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAATGGCGCCGAGCCTCTATCTCACATCCAAAGCCCTAATACCAACCCCAAGACCCTCCCTTTTGCCTCACTCTCTGCAACCCTCTTTCTCTACGCTTCGAGTCAACTCAGAGACTCGACCTTTGACTCGCTCGGTTCCCTCTAAGCTGCCCGTTCGAGCTGTGAACGACAGCGACTACTCGTCGAGGAGAAGCAGCAGCAATGAGCAGAGGGAGACCATTATGTTGCCGGGCTGTGACTATAACCACTGGCTTATTGTCATGGAGTTCCCTAAAGACCCTGCCCCAACTAGGGAGCAAATGATTGAGACCTACCTCAACACTCTCGCTTCTGTTCTTGGAAGCATGGAAGAAGCAAAGAAGAACATGTATGCTTTTAGCACCACCACCTACACTGGATTCCAATGTACTGTATCTGAAGAAACATCTGAAAAATTCAAAGGATTGCCTGGTGTTCTCTGGGTGTTGCCAGATTCATATATAGATGTTAAAAACAAGGATTATGGAGGTGATAAATATGTTAATGGAGAGATAATTCCTGGAAACTACCCTGTTTATCAACCAAAGAAACGGAGAGAATCAAAATTTGAGAGCAGAAGATATGAAAGACGAAGAGATGGACCTCCTCCTGAACGAAGAAAACCTAAACAAGAAGCAACTCCATCAGAATCAGCATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016070 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.88

Weight (kDa)

9.21

Isoelectric Point (pI)

74.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	82 - 174	1e-41	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11430
fragaria_vesca	FvH4_3g21470 FvH4_3g21470
malus_domestica	MD03G1215700.v1.1 MD11G1230300.v1.1
prunus_persica	Prupe.4G197100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036911
rosa_laevigata	RLG00000033733
rosa_roxburghii	Rroxscaffold_1G00044050
rosa_rugosa	Rorug05G0158700
rosa_samantha	Rh5AG251200 Rh5BG252700 Rh5CG285200
rosa_wichuraiana	Rw5G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	437, 587
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	294, 295
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	442
AhdI	GACNNNNNGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	451, 541
AluBI	AGCT	2 cut(s)	151, 164
AluI	AGCT	2 cut(s)	151, 164
Alw26I	GTCTC	3 cut(s)	110, 212, 305
AlwNI	CAGNNNCTG	1 cut(s)	680
ApeKI	GCWGC	3 cut(s)	151, 198, 201
ApoI	RAATTY	2 cut(s)	437, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	138, 210, 213
BccI	CCATC	2 cut(s)	614, 673
BciT130I	CCWGG	2 cut(s)	453, 543
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	110, 212, 305
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	3 cut(s)	152, 199, 202
BlsI	GCNGC	3 cut(s)	153, 200, 203
Bme1390I	CCNGG	3 cut(s)	234, 453, 543
Bme18I	GGWCC	1 cut(s)	623
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	2 cut(s)	12, 141
BmrFI	CCNGG	3 cut(s)	234, 453, 543
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	212, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 295
Bse1I	ACTGG	2 cut(s)	257, 403
Bse3DI	GCAATG	2 cut(s)	12, 211
BseBI	CCWGG	2 cut(s)	453, 543
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	294, 295
BseMI	GCAATG	2 cut(s)	12, 211
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	257, 403
BseRI	GAGGAG	2 cut(s)	205, 618
BseXI	GCAGC	3 cut(s)	138, 210, 213
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	294, 295
BsmAI	GTCTC	3 cut(s)	110, 212, 305
Bso31I	GGTCTC	2 cut(s)	212, 305
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	12, 141
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	2 cut(s)	212, 305
BsrDI	GCAATG	2 cut(s)	12, 211
BsrI	ACTGG	2 cut(s)	257, 403
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	453, 543
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	610
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	112, 147
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstMAI	GTCTC	3 cut(s)	110, 212, 305
BstNI	CCWGG	2 cut(s)	453, 543
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	232, 451, 541
BstV1I	GCAGC	3 cut(s)	138, 210, 213
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	250, 396
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	3 cut(s)	265, 349, 370
CviJI	RGCY	6 cut(s)	18, 38, 151, 164, 237, 256
CviKI_1	RGCY	6 cut(s)	18, 38, 151, 164, 237, 256
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	112, 147
DinI	GGCGCC	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	610
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	610
Eco31I	GGTCTC	2 cut(s)	212, 305
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	451, 541
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
FaeI	CATG	3 cut(s)	268, 352, 373
FatI	CATG	3 cut(s)	264, 348, 369
Fnu4HI	GCNGC	3 cut(s)	152, 199, 202
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	3 cut(s)	152, 199, 202
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	3 cut(s)	152, 199, 202
HaeII	RGCGCY	1 cut(s)	14
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	268, 352, 373
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	7 cut(s)	105, 118, 130, 402, 476, 581, 671
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	109, 169
Hpy188I	TCNGA	4 cut(s)	115, 421, 433, 670
Hpy188III	TCNNGA	2 cut(s)	632, 681
Hpy8I	GTNNAC	2 cut(s)	109, 169
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	112, 147
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	268, 352, 373
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	3 cut(s)	138, 210, 213
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	239
MboII	GAAGA	6 cut(s)	365, 376, 434, 612, 627, 651
MluCI	AATT	3 cut(s)	437, 537, 587
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	3 cut(s)	112, 114, 124
MseI	TTAA	2 cut(s)	492, 525
MslI	CAYNNNNRTG	1 cut(s)	682
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	234, 453, 543
MvaI	CCWGG	2 cut(s)	453, 543
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	234
NlaIII	CATG	3 cut(s)	268, 352, 373
NlaIV	GGNNCC	2 cut(s)	12, 141
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	373
PciI	ACATGT	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	402, 476, 581, 671
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	153, 200, 203
PleI	GAGTC	3 cut(s)	112, 113, 124
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	3 cut(s)	112, 113, 124
PscI	ACATGT	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	451, 541
PspGI	CCWGG	2 cut(s)	451, 541
PspN4I	GGNNCC	2 cut(s)	12, 141
PspPI	GGNCC	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	2 cut(s)	492, 525
SatI	GCNGC	3 cut(s)	152, 199, 202
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	3 cut(s)	112, 114, 124
ScrFI	CCNGG	3 cut(s)	234, 453, 543
SetI	ASST	9 cut(s)	127, 153, 166, 317, 321, 395, 514, 628, 649
SfoI	GGCGCC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	682
Sse9I	AATT	3 cut(s)	437, 537, 587
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	232, 451, 541
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	4 cut(s)	103, 121, 160, 188
TasI	AATT	3 cut(s)	437, 537, 587
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	4 cut(s)	402, 476, 581, 671
Tru1I	TTAA	2 cut(s)	492, 525
Tru9I	TTAA	2 cut(s)	492, 525
TscAI	CASTG	2 cut(s)	257, 403
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	151, 198, 201
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	468, 621
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	257, 403
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	437, 587
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.