Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016573

Physical Location & Seq

Genomic Coordinates Forward (+)

32191313 .. 32193749

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG251200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAATGGCGCCGAGCCTCTCTCTCACACCCAAAACCCTAATAATACCGACCCCAAGACTCTCCCTCTTCCAGCCCTCTATCTCCTCCCTCGGATTCAGCTCCTCCGCCGCCGCGACGCGCCCTCTTACTCGCTCGGTGCCGTCAAAGCCGACCCTTCGGGCCGTGAGCGACAGCGAGTACTCGTCCAGAAGGAGCAGCAGTAATGAGCAGAGGGAGACGATAATGTTACCGGGCTGTGACTATAACCACTGGCTCATAGTCATGGAGTTCCCCAAAGACCCTGCCCCTACTAGAGACCAAATGATTGAGACCTACCTCAACACTCTCGCTACTGTTCTCGGAAGTATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAGCACCACCACCTACACTGGATTCCAGTGTACTGTATCCGAAGAAACATCTGAAAAATTTAAAGGCTTGCCTGGTGTCCTCTGGGTGTTGCCAGATTCGTATATAGATGTTAAAAATAAGGATTATGGAGGTGATAAATATGTTAATGGAGAGATAATTCCTGGTAACTACCCTGTTTATCAACCGAAGAAACGAAGAGAATCAAAGTTTGAGAGCAGAAGATATGAAAGACGAAGGGATGGACCTCCTCCAGAACGAACACGGCCAAAACAAGAAGCAACTCCATCAGAATCATCATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016070 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.59

Weight (kDa)

9.11

Isoelectric Point (pI)

71.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	82 - 174	1.1e-41	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11430
fragaria_vesca	FvH4_3g21470 FvH4_3g21470
malus_domestica	MD03G1215700.v1.1 MD11G1230300.v1.1
prunus_persica	Prupe.4G197100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036911
rosa_laevigata	RLG00000033733
rosa_roxburghii	Rroxscaffold_1G00044050
rosa_rugosa	Rorug05G0158700
rosa_samantha	Rh5AG251200 Rh5BG252700 Rh5CG285200
rosa_wichuraiana	Rw5G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 139
AccII	CGCG	2 cut(s)	116, 121
AciI	CCGC	3 cut(s)	108, 111, 114
AcoI	YGGCCR	1 cut(s)	644
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	182, 412
AjnI	CCWGG	2 cut(s)	451, 541
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	212, 291, 305
AoxI	GGCC	2 cut(s)	162, 644
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	13, 123
AspS9I	GGNCC	2 cut(s)	162, 623
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	10, 139
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	2 cut(s)	614, 673
BceAI	ACGGC	3 cut(s)	127, 149, 659
BciT130I	CCWGG	2 cut(s)	453, 543
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	212, 291, 305
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	3 cut(s)	111, 114, 199
BlsI	GCNGC	3 cut(s)	112, 115, 200
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	3 cut(s)	234, 453, 543
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	2 cut(s)	162, 623
BmiI	GGNNCC	2 cut(s)	12, 141
BmrFI	CCNGG	3 cut(s)	234, 453, 543
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	291, 305
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse1I	ACTGG	3 cut(s)	257, 403, 406
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	453, 543
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	625
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	3 cut(s)	257, 403, 406
BseRI	GAGGAG	3 cut(s)	76, 94, 618
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	116, 121
BshFI	GGCC	2 cut(s)	164, 646
BshNI	GGYRCC	2 cut(s)	10, 139
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	3 cut(s)	212, 291, 305
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	164, 646
Bso31I	GGTCTC	2 cut(s)	291, 305
BspACI	CCGC	3 cut(s)	108, 111, 114
BspANI	GGCC	2 cut(s)	164, 646
BspFNI	CGCG	2 cut(s)	116, 121
BspLI	GGNNCC	2 cut(s)	12, 141
BspT107I	GGYRCC	2 cut(s)	10, 139
BspTNI	GGTCTC	2 cut(s)	291, 305
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	257, 403, 406
BssECI	CCNNGG	1 cut(s)	91
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	453, 543
Bst4CI	ACNGT	2 cut(s)	337, 415
Bst6I	CTCTTC	2 cut(s)	74, 571
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	116, 121
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 123
BstMAI	GTCTC	3 cut(s)	212, 291, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	2 cut(s)	453, 543
BstSCI	CCNGG	3 cut(s)	232, 451, 541
BstUI	CGCG	2 cut(s)	116, 121
BstV1I	GCAGC	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	164, 646
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	3 cut(s)	250, 396, 413
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	2 cut(s)	13, 123
Cfr13I	GGNCC	2 cut(s)	162, 623
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	181, 411
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	9 cut(s)	18, 76, 102, 151, 164, 237, 256, 447, 646
CviKI_1	RGCY	9 cut(s)	18, 76, 102, 151, 164, 237, 256, 447, 646
CviQI	GTAC	2 cut(s)	181, 411
DinI	GGCGCC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	644
Eam1104I	CTCTTC	2 cut(s)	74, 571
EarI	CTCTTC	2 cut(s)	74, 571
EciI	GGCGGA	1 cut(s)	97
Eco31I	GGTCTC	2 cut(s)	291, 305
Eco47I	GGWCC	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	451, 541
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	268
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	111, 114, 199
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	3 cut(s)	111, 114, 199
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	12, 122
GluI	GCNGC	3 cut(s)	111, 114, 199
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	164, 646
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	2 cut(s)	13, 123
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	2 cut(s)	11, 121
HinP1I	GCGC	2 cut(s)	11, 121
HinfI	GANTC	6 cut(s)	60, 96, 402, 476, 581, 671
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	5 cut(s)	95, 344, 421, 433, 670
Hpy188III	TCNNGA	2 cut(s)	189, 632
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	167, 186, 609
HpyCH4III	ACNGT	2 cut(s)	337, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	2 cut(s)	11, 121
KasI	GGCGCC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	107, 195
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	228, 239, 545
MboII	GAAGA	7 cut(s)	61, 365, 376, 434, 580, 588, 612
MluCI	AATT	2 cut(s)	437, 537
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	54
MseI	TTAA	3 cut(s)	441, 492, 525
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	234, 453, 543
MvaI	CCWGG	2 cut(s)	453, 543
MvnI	CGCG	2 cut(s)	116, 121
MwoI	GCNNNNNNNGC	1 cut(s)	148
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	234
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	12, 141
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	239
PfeI	GAWTC	5 cut(s)	96, 402, 476, 581, 671
PkrI	GCNGC	3 cut(s)	112, 115, 200
PleI	GAGTC	1 cut(s)	54
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	451, 541
PspGI	CCWGG	2 cut(s)	451, 541
PspN4I	GGNNCC	2 cut(s)	12, 141
PspPI	GGNCC	2 cut(s)	162, 623
RsaI	GTAC	2 cut(s)	182, 412
RsaNI	GTAC	2 cut(s)	181, 411
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	441, 492, 525
SatI	GCNGC	3 cut(s)	111, 114, 199
Sau96I	GGNCC	2 cut(s)	162, 623
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	3 cut(s)	234, 453, 543
SetI	ASST	6 cut(s)	104, 317, 321, 395, 514, 628
SfoI	GGCGCC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	437, 537
SsiI	CCGC	3 cut(s)	108, 111, 114
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	232, 451, 541
TaaI	ACNGT	2 cut(s)	337, 415
TasI	AATT	2 cut(s)	437, 537
TatI	WGTACW	2 cut(s)	180, 410
TauI	GCSGC	2 cut(s)	113, 116
TfiI	GAWTC	5 cut(s)	96, 402, 476, 581, 671
Tru1I	TTAA	3 cut(s)	441, 492, 525
Tru9I	TTAA	3 cut(s)	441, 492, 525
TscAI	CASTG	3 cut(s)	257, 403, 413
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	621
TspRI	CASTG	3 cut(s)	257, 403, 413
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.