Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016573

Physical Location & Seq

Genomic Coordinates Forward (+)

14583228 .. 14585425

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAATGGCGCCGAGCCTCTCTCTCACACCCAAAACCCTAATACCAACCACCCCACGGCTCTCCCTCTTCGCCCCTCACATCCAGCCCTCCATCTCCTCCCTCGGATTCACCTCCGCCGCCGCGGCTCGCCGTCTGACACGCTCGGTGGTGCCGTCCAAGCTCAGCGTCCGAGCTGTGAGCGACAGCGAGTACTCGTCGAGGAGGAGCAGCAGTAATGAGCAGAGGGAGACGATAATGTTACCGGGCTGTGACTATAACCACTGGCTTATAGTCATGGAGTTCCCCAAAGACCCTGCCCCTACTAGAGACCAAATGATTGAGACCTACCTCAACACCCTCGCTACTGTTCTTGGAAGTATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAGCACCACCACCTACACTGGATTCCAATGTACTGTATTGGAAGAAACATCTGAAAAATTTAAAGGGTTGCCTGGTGTTCTCTGGGTGTTGCCAGATTCGTATATAGATGTTAAAAATAAGGATTATGGAGGTGATAAGTATGTTAATGGAGAGATAATTCCCGGTAACTACCCTGTTTACCAACCGAAGAAACGAAGAGAATCAAAGTTTGAGAGCAGAAGATATGAAAGACGAAGAGATGGGCCTCCTCCAGAACGAACACGGCCAAAACAAGAAGCAACTCCATCAGAATCTGCATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016070 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.05

Weight (kDa)

9.24

Isoelectric Point (pI)

69.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	86 - 178	7.3e-41	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11430
fragaria_vesca	FvH4_3g21470 FvH4_3g21470
malus_domestica	MD03G1215700.v1.1 MD11G1230300.v1.1
prunus_persica	Prupe.4G197100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036911
rosa_laevigata	RLG00000033733
rosa_roxburghii	Rroxscaffold_1G00044050
rosa_rugosa	Rorug05G0158700
rosa_samantha	Rh5AG251200 Rh5BG252700 Rh5CG285200
rosa_wichuraiana	Rw5G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 151
AccII	CGCG	1 cut(s)	125
AciI	CCGC	4 cut(s)	117, 120, 123, 125
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	194, 424
AfiI	CCNNNNNNNGG	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	2 cut(s)	163, 176
AluI	AGCT	2 cut(s)	163, 176
Alw26I	GTCTC	3 cut(s)	224, 303, 317
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	635, 656
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	635
AsuC2I	CCSGG	2 cut(s)	246, 555
AsuHPI	GGTGA	2 cut(s)	103, 536
BanI	GGYRCC	2 cut(s)	10, 151
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	3 cut(s)	101, 626, 685
BceAI	ACGGC	4 cut(s)	74, 117, 139, 671
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	2 cut(s)	246, 555
BcoDI	GTCTC	3 cut(s)	224, 303, 317
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	14
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	4 cut(s)	120, 123, 126, 211
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	4 cut(s)	121, 124, 127, 212
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	3 cut(s)	246, 465, 555
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	2 cut(s)	12, 153
BmrFI	CCNGG	3 cut(s)	246, 465, 555
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	246, 555
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	303, 317
BsaJI	CCNNGG	3 cut(s)	56, 103, 123
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	269, 415
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	56, 103, 123
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	2 cut(s)	269, 415
BseRI	GAGGAG	4 cut(s)	88, 217, 220, 630
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	637, 658
BshNI	GGYRCC	2 cut(s)	10, 151
BsiSI	CCGG	2 cut(s)	245, 555
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	3 cut(s)	224, 303, 317
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	637, 658
Bso31I	GGTCTC	2 cut(s)	303, 317
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	4 cut(s)	117, 120, 123, 125
BspANI	GGCC	2 cut(s)	637, 658
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	12, 153
BspT107I	GGYRCC	2 cut(s)	10, 151
BspTNI	GGTCTC	2 cut(s)	303, 317
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	269, 415
BssECI	CCNNGG	3 cut(s)	56, 103, 123
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	349, 427
Bst6I	CTCTTC	3 cut(s)	74, 583, 622
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	56, 123
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstMAI	GTCTC	3 cut(s)	224, 303, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 160
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	3 cut(s)	244, 463, 553
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	637, 658
BtgI	CCRYGG	2 cut(s)	56, 123
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	262, 408
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	686
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	635
Cfr42I	CCGCGG	1 cut(s)	126
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	193, 423
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	2 cut(s)	193, 423
DdeI	CTNAG	1 cut(s)	164
DinI	GGCGCC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	3 cut(s)	74, 583, 622
EarI	CTCTTC	3 cut(s)	74, 583, 622
EciI	GGCGGA	1 cut(s)	106
Eco31I	GGTCTC	2 cut(s)	303, 317
EcoRII	CCWGG	1 cut(s)	463
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	1 cut(s)	280
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	120, 123, 126, 211
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	120, 123, 126, 211
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	4 cut(s)	120, 123, 126, 211
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	637, 658
HapII	CCGG	2 cut(s)	245, 555
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	5 cut(s)	108, 414, 488, 593, 683
HpaII	CCGG	2 cut(s)	245, 555
HphI	GGTGA	2 cut(s)	103, 536
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	5 cut(s)	107, 138, 173, 445, 682
Hpy188III	TCNNGA	1 cut(s)	644
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	349, 427
HpyCH4V	TGCA	1 cut(s)	689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 160
HpyF3I	CTNAG	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
KspI	CCGCGG	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	240, 251, 557
MboII	GAAGA	8 cut(s)	61, 377, 388, 446, 592, 600, 624, 639
MluCI	AATT	2 cut(s)	449, 549
Mly113I	GGCGCC	1 cut(s)	11
MseI	TTAA	3 cut(s)	453, 504, 537
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	245, 555
MspR9I	CCNGG	3 cut(s)	246, 465, 555
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	125, 160
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	246, 555
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	12, 153
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PfeI	GAWTC	5 cut(s)	108, 414, 488, 593, 683
PkrI	GCNGC	4 cut(s)	121, 124, 127, 212
PluTI	GGCGCC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	12, 153
PspPI	GGNCC	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	194, 424
RsaNI	GTAC	2 cut(s)	193, 423
SacII	CCGCGG	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	453, 504, 537
SatI	GCNGC	4 cut(s)	120, 123, 126, 211
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	246, 465, 555
SetI	ASST	7 cut(s)	116, 165, 178, 329, 333, 407, 526
SfoI	GGCGCC	1 cut(s)	12
Sfr303I	CCGCGG	1 cut(s)	126
SgrBI	CCGCGG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	449, 549
SsiI	CCGC	4 cut(s)	117, 120, 123, 125
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	244, 463, 553
TaaI	ACNGT	2 cut(s)	349, 427
TaqI	TCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	449, 549
TatI	WGTACW	2 cut(s)	192, 422
TauI	GCSGC	3 cut(s)	122, 125, 128
TfiI	GAWTC	5 cut(s)	108, 414, 488, 593, 683
Tru1I	TTAA	3 cut(s)	453, 504, 537
Tru9I	TTAA	3 cut(s)	453, 504, 537
TscAI	CASTG	2 cut(s)	269, 415
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	633
TspRI	CASTG	2 cut(s)	269, 415
XapI	RAATTY	1 cut(s)	449
XspI	CTAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.