Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016573

Physical Location & Seq

Genomic Coordinates Forward (+)

31404027 .. 31405747

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCAATGGCGCCGAGCCTCTCTCTCACACCCAAAACCCTAATAATACCGACCCCAAGACTCTCCCTCTTCCAGCCCTCTATCTCCTCCCTCGGATTCAGCTCCTCCTCCGCCGCCGCGACTCGCCCTCTTACTCGCTCGGTGCCGCCAAAGCCGACCCTTCGGGCCGTGAGCGACAGCGAGTACTCGTCCAGAAGGAGCAGCAGTAATGAGCAGAGGGAGACGATAATGTTACCGGGCTGTGACTATAACCACTGGCTCATAGTCATGGAGTTCCCCAAAGACCCTGCCCCTACTAGAGACCAAATGATTGAGACCTACCTCAACACTCTCGCTACTGTTCTCGGAAGTATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAGCACCACCACCTACACTGGATTCCAGTGTACTGTATCGGAAGAAACATCTGAAAAATTTAAAGGCTTGCCTGGTGTCCTCTGGGTGTTGCCAGATTCGTATATAGATGTTAAAAATAAGGATTATGGAGGTGATAAATATGTTAATGGAGAGATAATTCCTGGTAACTACCCTGTTTATCAACCGAAGAAACGAAGAGAATCAAAGTTTGAGAGCAGAAGATATGAAAGACGAAGAGATGGACCTCCTCCAGAACGAACACGGCCAAAACAAGAAGCAACTCCATCAGAATCAGCATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016070 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1900865 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.68

Weight (kDa)

9.11

Isoelectric Point (pI)

70.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	83 - 175	1.1e-41	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11430
fragaria_vesca	FvH4_3g21470 FvH4_3g21470
malus_domestica	MD03G1215700.v1.1 MD11G1230300.v1.1
prunus_persica	Prupe.4G197100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0036911
rosa_laevigata	RLG00000033733
rosa_roxburghii	Rroxscaffold_1G00044050
rosa_rugosa	Rorug05G0158700
rosa_samantha	Rh5AG251200 Rh5BG252700 Rh5CG285200
rosa_wichuraiana	Rw5G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 142
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	111, 114, 117, 146
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	185, 415
AjnI	CCWGG	2 cut(s)	454, 544
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	215, 294, 308
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	165, 647
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	165, 626
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	626
BanI	GGYRCC	2 cut(s)	10, 142
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	617, 676
BceAI	ACGGC	2 cut(s)	152, 662
BciT130I	CCWGG	2 cut(s)	456, 546
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	215, 294, 308
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	4 cut(s)	114, 117, 146, 202
BlsI	GCNGC	4 cut(s)	115, 118, 147, 203
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	3 cut(s)	237, 456, 546
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	165, 626
BmiI	GGNNCC	2 cut(s)	12, 144
BmrFI	CCNGG	3 cut(s)	237, 456, 546
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	1 cut(s)	618
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	294, 308
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bse1I	ACTGG	3 cut(s)	260, 406, 409
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	456, 546
BseDI	CCNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	3 cut(s)	260, 406, 409
BseRI	GAGGAG	4 cut(s)	76, 94, 97, 621
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	167, 649
BshNI	GGYRCC	2 cut(s)	10, 142
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	3 cut(s)	215, 294, 308
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	167, 649
Bso31I	GGTCTC	2 cut(s)	294, 308
BspACI	CCGC	4 cut(s)	111, 114, 117, 146
BspANI	GGCC	2 cut(s)	167, 649
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	12, 144
BspT107I	GGYRCC	2 cut(s)	10, 142
BspTNI	GGTCTC	2 cut(s)	294, 308
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	260, 406, 409
BssECI	CCNNGG	1 cut(s)	91
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	456, 546
Bst4CI	ACNGT	2 cut(s)	340, 418
Bst6I	CTCTTC	3 cut(s)	74, 574, 613
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstMAI	GTCTC	3 cut(s)	215, 294, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	456, 546
BstSCI	CCNGG	3 cut(s)	235, 454, 544
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	167, 649
BtsIMutI	CAGTG	3 cut(s)	253, 399, 416
Cac8I	GCNNGC	1 cut(s)	452
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	165, 626
Csp6I	GTAC	2 cut(s)	184, 414
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	18, 76, 102, 154, 167, 240, 259, 450, 649
CviKI_1	RGCY	9 cut(s)	18, 76, 102, 154, 167, 240, 259, 450, 649
CviQI	GTAC	2 cut(s)	184, 414
DinI	GGCGCC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	647
Eam1104I	CTCTTC	3 cut(s)	74, 574, 613
EarI	CTCTTC	3 cut(s)	74, 574, 613
EciI	GGCGGA	1 cut(s)	100
Eco31I	GGTCTC	2 cut(s)	294, 308
Eco47I	GGWCC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	454, 544
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	271
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	114, 117, 146, 202
Fsp4HI	GCNGC	4 cut(s)	114, 117, 146, 202
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	4 cut(s)	114, 117, 146, 202
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	167, 649
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	7 cut(s)	60, 96, 121, 405, 479, 584, 674
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	5 cut(s)	95, 347, 424, 436, 673
Hpy188III	TCNNGA	2 cut(s)	192, 635
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	2 cut(s)	170, 189
HpyCH4III	ACNGT	2 cut(s)	340, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	107, 198
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	231, 242, 548
MboII	GAAGA	8 cut(s)	61, 368, 379, 437, 583, 591, 615, 630
MluCI	AATT	2 cut(s)	440, 540
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	54, 115
MseI	TTAA	3 cut(s)	444, 495, 528
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	3 cut(s)	237, 456, 546
MvaI	CCWGG	2 cut(s)	456, 546
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	237
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	12, 144
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	242
PfeI	GAWTC	5 cut(s)	96, 405, 479, 584, 674
PkrI	GCNGC	4 cut(s)	115, 118, 147, 203
PleI	GAGTC	2 cut(s)	54, 115
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	54, 115
Psp6I	CCWGG	2 cut(s)	454, 544
PspGI	CCWGG	2 cut(s)	454, 544
PspN4I	GGNNCC	2 cut(s)	12, 144
PspPI	GGNCC	2 cut(s)	165, 626
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	185, 415
RsaNI	GTAC	2 cut(s)	184, 414
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	444, 495, 528
SatI	GCNGC	4 cut(s)	114, 117, 146, 202
Sau96I	GGNCC	2 cut(s)	165, 626
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	54, 115
ScrFI	CCNGG	3 cut(s)	237, 456, 546
SetI	ASST	6 cut(s)	104, 320, 324, 398, 517, 631
SfoI	GGCGCC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	626
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	440, 540
SsiI	CCGC	4 cut(s)	111, 114, 117, 146
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	235, 454, 544
TaaI	ACNGT	2 cut(s)	340, 418
TasI	AATT	2 cut(s)	440, 540
TatI	WGTACW	2 cut(s)	183, 413
TauI	GCSGC	3 cut(s)	116, 119, 148
TfiI	GAWTC	5 cut(s)	96, 405, 479, 584, 674
Tru1I	TTAA	3 cut(s)	444, 495, 528
Tru9I	TTAA	3 cut(s)	444, 495, 528
TscAI	CASTG	3 cut(s)	260, 406, 416
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	624
TspRI	CASTG	3 cut(s)	260, 406, 416
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	440
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.