AT1G11750

clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013343
Physical Location & Seq
Forward (+)
3967476 .. 3969877
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11750.2

Sequence Viewer

Length: 816 bp
ATGGCGGGTTTAGCAATTTCACCTCCTCTCGGTCTTTCCTTCTCTTCTCGAACTCGAAACCCTAAACCCACTTCCTTTCTATCTCACAATCAAAGGAATCCTATAAGACGTATAGTTTCTGCTCTACAGAGTCCATATGGAGATTCTCTGAAAGCTGGACTTTCTAGTAATGTTTCTGGATCCCCAATAAAGATTGACAACAAGGCTCCAAGATTTGGAGTGATAGAGGCGAAAAAGGGAAACCCCCCAGTAATGCCTTCAGTGATGACCCCTGGAGGACCTTTAGACCTCTCTTCTGTGTTATTCCGTAACCGCATAATCTTCATCGGGCAACCAATTAACGCACAGGTTGCTCAGCGAGTCATATCTCAGCTTGTAACCCTTGCATCTATTGATGATAAATCCGACATCCTGATGTACTTGAATTGTCCCGGTGGCAGTACTTACTCCGTCCTAGCAATTTATGACTGTATGTCTTGGATAAAGCCTAAAGTTGGAACAGTGGCGTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGAGGTGAAAAAGGAATGCGCTATGCAATGCCAAATACTCGTGTCATGATACATCAACCACAAACTGGATGCGGAGGACATGTAGAGGACGTGAGGAGACAGGTCAATGAAGCCATCGAAGCCCGACAAAAAATTGACAGGATGTATGCAGCTTTCACTGGACAACCTCTGGAGAAAGTGCAGCAATACACTGAAAGAGATCGTTTCTTATCAGCATCTGAGGCGCTTGAGTTCGGGCTCATTGATGGTCTATTGGAAACAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

271

Amino Acids

29.38

Weight (kDa)

9.38

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 114 - 287 5.9e-66 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11750 AT1G11750
fragaria_vesca FvH4_2g13930
malus_domestica MD05G1045200.v1.1 MD10G1052100.v1.1
prunus_persica Prupe.8G061700_v2.0.a1 Prupe.8G061700_v2.0.a1
pyrus_communis pycom10g03680
rosa_chinensis RchiOBHm_Chr6g0275681
rosa_laevigata RLG00000013447
rosa_multiflora Rmu_sc0016068.1_g000003 Rmu_sc0018708.1_g000009
rosa_roxburghii Rroxscaffold_7G00193030
rosa_rugosa Rorug06G0095600
rosa_samantha Rh6AG207500 Rh6CG213500 Rh6DG203200
rosa_wichuraiana Rw6G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 215, 611
AciI CCGC 3 cut(s) 5, 313, 618
AclWI GGATC 2 cut(s) 174, 187
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 419, 442
AfiI CCNNNNNNNGG 4 cut(s) 29, 215, 494, 611
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 1 cut(s) 424
AhdI GACNNNNNGTC 1 cut(s) 472
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 4 cut(s) 155, 373, 518, 698
AluI AGCT 4 cut(s) 155, 373, 518, 698
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 2 cut(s) 174, 187
AlwNI CAGNNNCTG 1 cut(s) 764
ApeKI GCWGC 3 cut(s) 518, 695, 727
AspLEI GCGC 2 cut(s) 567, 772
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 12, 563
AvaII GGWCC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 786
BauI CACGAG 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 3 cut(s) 505, 707, 739
BccI CCATC 2 cut(s) 668, 785
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 2 cut(s) 165, 455
BfmI CTRYAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 773
BisI GCNGC 3 cut(s) 519, 696, 728
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 3 cut(s) 520, 697, 729
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 273, 432
Bme18I GGWCC 1 cut(s) 278
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 181, 207
BmrFI CCNGG 2 cut(s) 273, 432
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 395, 605, 770
BmuI ACTGGG 1 cut(s) 242
BpmI CTGGAG 3 cut(s) 294, 567, 737
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 271, 526
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 215, 494, 611
Bse1I ACTGG 3 cut(s) 248, 616, 709
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 271, 526
BseGI GGATG 3 cut(s) 408, 620, 693
BseLI CCNNNNNNNGG 4 cut(s) 29, 215, 494, 611
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 3 cut(s) 368, 383, 756
BseNI ACTGG 3 cut(s) 248, 616, 709
BseRI GAGGAG 2 cut(s) 15, 655
BseXI GCAGC 3 cut(s) 505, 707, 739
BsgI GTGCAG 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 4 cut(s) 29, 215, 494, 611
BsmAI GTCTC 1 cut(s) 637
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 567
Bsp1286I GDGCHC 2 cut(s) 535, 786
Bsp143I GATC 2 cut(s) 179, 745
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 3 cut(s) 5, 313, 618
BspCNI CTCAG 3 cut(s) 367, 382, 757
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 181, 207
BspPI GGATC 2 cut(s) 174, 187
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 3 cut(s) 248, 616, 709
BssECI CCNNGG 2 cut(s) 271, 526
BssMI GATC 2 cut(s) 179, 745
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 526
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 470, 502
Bst6I CTCTTC 2 cut(s) 49, 298
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 3 cut(s) 354, 369, 765
BstF5I GGATG 3 cut(s) 408, 620, 693
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 2 cut(s) 567, 772
BstKTI GATC 2 cut(s) 182, 748
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 2 cut(s) 179, 745
BstMWI GCNNNNNNNGC 4 cut(s) 11, 350, 665, 767
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 2 cut(s) 271, 430
BstSFI CTRYAG 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 505, 707, 739
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 408, 620, 693
BtsIMutI CAGTG 4 cut(s) 267, 507, 702, 735
Cac8I GCNNGC 1 cut(s) 523
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 591
CfoI GCGC 2 cut(s) 567, 772
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 418, 441
CviAII CATG 2 cut(s) 592, 626
CviQI GTAC 2 cut(s) 418, 441
DdeI CTNAG 3 cut(s) 354, 369, 765
DpnI GATC 2 cut(s) 181, 747
DpnII GATC 2 cut(s) 179, 745
DriI GACNNNNNGTC 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 49, 298
Eam1105I GACNNNNNGTC 1 cut(s) 472
EarI CTCTTC 2 cut(s) 49, 298
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 2 cut(s) 595, 629
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 519, 551
FaqI GGGAC 1 cut(s) 414
FatI CATG 2 cut(s) 591, 625
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 519, 696, 728
FokI GGATG 3 cut(s) 395, 627, 700
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 3 cut(s) 519, 696, 728
FspBI CTAG 2 cut(s) 165, 455
GlaI GCGC 2 cut(s) 566, 771
GluI GCNGC 3 cut(s) 519, 696, 728
GsuI CTGGAG 3 cut(s) 294, 567, 737
HaeII RGCGCY 1 cut(s) 773
HapII CCGG 1 cut(s) 432
HhaI GCGC 2 cut(s) 567, 772
Hin1II CATG 2 cut(s) 595, 629
Hin6I GCGC 2 cut(s) 565, 770
HinP1I GCGC 2 cut(s) 565, 770
HinfI GANTC 4 cut(s) 97, 130, 143, 360
HpaII CCGG 1 cut(s) 432
HphI GGTGA 2 cut(s) 12, 563
Hpy188I TCNGA 3 cut(s) 150, 406, 766
Hpy188III TCNNGA 5 cut(s) 48, 177, 412, 592, 716
HpyAV CCTTC 2 cut(s) 49, 267
HpyCH4III ACNGT 2 cut(s) 470, 502
HpyCH4IV ACGT 2 cut(s) 109, 636
HpyCH4V TGCA 5 cut(s) 386, 521, 572, 695, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 350, 665, 767
HpyF3I CTNAG 3 cut(s) 354, 369, 765
HpySE526I ACGT 2 cut(s) 109, 636
Hsp92II CATG 2 cut(s) 595, 629
HspAI GCGC 2 cut(s) 565, 770
Kzo9I GATC 2 cut(s) 179, 745
LmnI GCTCC 2 cut(s) 211, 530
Lsp1109I GCAGC 3 cut(s) 505, 707, 739
LweI GCATC 3 cut(s) 395, 605, 770
MaeI CTAG 2 cut(s) 165, 455
MaeII ACGT 2 cut(s) 109, 636
MaeIII GTNAC 2 cut(s) 308, 376
MalI GATC 2 cut(s) 181, 747
MboI GATC 2 cut(s) 179, 745
MboII GAAGA 4 cut(s) 36, 285, 313, 530
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 535, 786
MluCI AATT 5 cut(s) 15, 336, 424, 459, 678
MlyI GAGTC 2 cut(s) 139, 369
MmeI TCCRAC 2 cut(s) 429, 475
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 2 cut(s) 273, 432
Mva1269I GAATGC 1 cut(s) 567
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 4 cut(s) 11, 350, 665, 767
NciI CCSGG 1 cut(s) 432
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 179, 745
NlaIII CATG 2 cut(s) 595, 629
NlaIV GGNNCC 2 cut(s) 181, 207
NspI RCATGY 1 cut(s) 629
PagI TCATGA 1 cut(s) 591
PciI ACATGT 1 cut(s) 625
PctI GAATGC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 97, 143
PflMI CCANNNNNTGG 2 cut(s) 215, 611
PkrI GCNGC 3 cut(s) 520, 697, 729
PleI GAGTC 2 cut(s) 138, 368
PpsI GAGTC 2 cut(s) 138, 368
PpuMI RGGWCCY 1 cut(s) 278
PscI ACATGT 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 181, 207
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 419, 442
RsaNI GTAC 2 cut(s) 418, 441
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 519, 696, 728
Sau3AI GATC 2 cut(s) 179, 745
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 2 cut(s) 139, 369
ScrFI CCNGG 2 cut(s) 273, 432
SduI GDGCHC 2 cut(s) 535, 786
SfaNI GCATC 3 cut(s) 395, 605, 770
SfcI CTRYAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 5 cut(s) 15, 336, 424, 459, 678
SsiI CCGC 3 cut(s) 5, 313, 618
SspMI CTAG 2 cut(s) 165, 455
StyD4I CCNGG 2 cut(s) 271, 430
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 470, 502
TaiI ACGT 2 cut(s) 112, 639
TaqI TCGA 3 cut(s) 49, 55, 663
TaqII GACCGA 1 cut(s) 20
TasI AATT 5 cut(s) 15, 336, 424, 459, 678
TatI WGTACW 2 cut(s) 417, 440
TfiI GAWTC 2 cut(s) 97, 143
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 4 cut(s) 267, 507, 709, 742
TseI GCWGC 3 cut(s) 518, 695, 727
TspDTI ATGAA 2 cut(s) 313, 669
TspGWI ACGGA 2 cut(s) 296, 439
TspRI CASTG 4 cut(s) 267, 507, 709, 742
Van91I CCANNNNNTGG 2 cut(s) 215, 611
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 629
XspI CTAG 2 cut(s) 165, 455
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.