FvH4_2g13930

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013343
Physical Location & Seq
Reverse (-)
12214032 .. 12220506
6475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13930.t1

Sequence Viewer

Length: 792 bp
ATGGTAGCTTCAGCTTTCTCGGCGCCCCTGAGCTTCTCGTTCGCTTCGCTCCCTTCCGTTTCCGTCAGAAAACCGAAGAGTTGTACAGTCTTTGCAACCTTGCGGAGTCCTTATGGCGACGCTGCCGGTTTATCGAGTGGCACATCTCTAAAGCTTGATGGCAAGTTTTTTGGTGATACTAGTACCAGTTACGGTGCAATAGAAGCGAAAAAGGGGAATCCGCCAATACTGCCGGCAGTTATGACCCCGGGAGGACCTTTAGACCTCTCTTCTGTGCTATTTAGAAATCGTATAATCTTCATTGGGCAGCCTGTCAACTCCTTGGTGGCTCAACGAGTCATATCACAGCTTGTAACTCTGGCTACCATTGATGAGGAAGCAGATATTCTGGTTTACTTGAACTGCCCTGGTGGGAGTACATACTCCGTGTTGGCAATTTATGACTGCATGTCTTGGATTAAACCTAAGGTGGGGACAGTATGTTTTGGAGTAGCTGCTAGCCAAGGAGCACTTCTTCTTGCTGGAGGAGAAAAGGGAATGCGCTATGCAATGCCAAATGCACGAATTATGATACACCAACCTCAAAGTGGCTGTGGGGGTCACGTAGAAGATGTGAGGCGCCAAGTTAATGAAGCAGTTCAAACTCGCCATAAAGTCGACAAAATGTACGTTGCTTTTACCGGCCAATCTCTAGAGACTGTGCAGCAATACACTGAGAGGGATCGTTTTTTATCTGTTTCCGAGGCTATGGAGTTTGGACTAATTGATGGTGTGCTGGAAACAGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

264

Amino Acids

28.21

Weight (kDa)

6.82

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 88 - 261 3.1e-66 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11750 AT1G11750
fragaria_vesca FvH4_2g13930
malus_domestica MD05G1045200.v1.1 MD10G1052100.v1.1
prunus_persica Prupe.8G061700_v2.0.a1 Prupe.8G061700_v2.0.a1
pyrus_communis pycom10g03680
rosa_chinensis RchiOBHm_Chr6g0275681
rosa_laevigata RLG00000013447
rosa_multiflora Rmu_sc0016068.1_g000003 Rmu_sc0018708.1_g000009
rosa_roxburghii Rroxscaffold_7G00193030
rosa_rugosa Rorug06G0095600
rosa_samantha Rh6AG207500 Rh6CG213500 Rh6DG203200
rosa_wichuraiana Rw6G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 22, 618
AccI GTMKAC 1 cut(s) 657
AciI CCGC 2 cut(s) 103, 221
AclWI GGATC 1 cut(s) 729
AcoI YGGCCR 1 cut(s) 682
AcyI GRCGYC 2 cut(s) 23, 619
AfaI GTAC 4 cut(s) 85, 184, 418, 668
AfiI CCNNNNNNNGG 2 cut(s) 470, 587
AgsI TTSAA 2 cut(s) 400, 641
AhdI GACNNNNNGTC 1 cut(s) 448
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 406
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 6 cut(s) 8, 14, 33, 154, 349, 494
AluI AGCT 6 cut(s) 8, 14, 33, 154, 349, 494
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 1 cut(s) 729
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 4 cut(s) 122, 307, 494, 703
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 3 cut(s) 25, 543, 621
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 2 cut(s) 248, 249
AsuHPI GGTGA 1 cut(s) 185
AsuNHI GCTAGC 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 465
BanI GGYRCC 2 cut(s) 22, 618
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 4 cut(s) 109, 319, 481, 715
BccI CCATC 2 cut(s) 152, 761
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 2 cut(s) 248, 249
BcoDI GTCTC 1 cut(s) 689
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 3 cut(s) 180, 498, 692
BfoI RGCGCY 2 cut(s) 26, 622
BisI GCNGC 4 cut(s) 123, 308, 495, 704
BlsI GCNGC 4 cut(s) 124, 309, 496, 705
Bme1390I CCNGG 3 cut(s) 248, 249, 408
Bme18I GGWCC 1 cut(s) 254
BmeRI GACNNNNNGTC 1 cut(s) 448
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 24, 620
BmrFI CCNGG 3 cut(s) 248, 249, 408
BmtI GCTAGC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 248, 249
BsaAI YACGTR 1 cut(s) 604
BsaHI GRCGYC 2 cut(s) 23, 619
BsaJI CCNNGG 6 cut(s) 246, 247, 321, 406, 502, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 587
Bse118I RCCGGY 3 cut(s) 125, 232, 680
Bse1I ACTGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 6 cut(s) 246, 247, 321, 406, 502, 741
BseLI CCNNNNNNNGG 2 cut(s) 470, 587
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 20, 705
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 540
BseXI GCAGC 4 cut(s) 109, 319, 481, 715
BsgI GTGCAG 1 cut(s) 722
BshFI GGCC 1 cut(s) 684
BshNI GGYRCC 2 cut(s) 22, 618
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 4 cut(s) 126, 233, 248, 681
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 470, 587
BsmAI GTCTC 1 cut(s) 689
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 684
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 1 cut(s) 721
BspACI CCGC 2 cut(s) 103, 221
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 2 cut(s) 21, 706
BspLI GGNNCC 2 cut(s) 24, 620
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 729
BspT107I GGYRCC 2 cut(s) 22, 618
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 3 cut(s) 125, 232, 680
BsrGI TGTACA 1 cut(s) 83
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 3 cut(s) 125, 232, 680
BssECI CCNNGG 6 cut(s) 246, 247, 321, 406, 502, 741
BssMI GATC 1 cut(s) 721
BssNI GRCGYC 2 cut(s) 23, 619
BssT1I CCWWGG 2 cut(s) 321, 502
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 4 cut(s) 88, 194, 478, 700
Bst6I CTCTTC 2 cut(s) 71, 274
BstACI GRCGYC 2 cut(s) 23, 619
BstAUI TGTACA 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 2 cut(s) 234, 499
BstDEI CTNAG 3 cut(s) 29, 465, 714
BstH2I RGCGCY 2 cut(s) 26, 622
BstHHI GCGC 3 cut(s) 25, 543, 621
BstKTI GATC 1 cut(s) 724
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 1 cut(s) 721
BstMWI GCNNNNNNNGC 3 cut(s) 20, 203, 229
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 246, 247, 406
BstV1I GCAGC 4 cut(s) 109, 319, 481, 715
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 2 cut(s) 234, 499
CfoI GCGC 3 cut(s) 25, 543, 621
Cfr10I RCCGGY 3 cut(s) 125, 232, 680
Cfr13I GGNCC 1 cut(s) 254
Cfr9I CCCGGG 1 cut(s) 247
CseI GACGC 1 cut(s) 128
Csp6I GTAC 4 cut(s) 84, 183, 417, 667
CviAII CATG 1 cut(s) 448
CviQI GTAC 4 cut(s) 84, 183, 417, 667
DdeI CTNAG 3 cut(s) 29, 465, 714
DinI GGCGCC 2 cut(s) 24, 620
DpnI GATC 1 cut(s) 723
DpnII GATC 1 cut(s) 721
DriI GACNNNNNGTC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 2 cut(s) 71, 274
Eam1105I GACNNNNNGTC 1 cut(s) 448
EarI CTCTTC 2 cut(s) 71, 274
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 321, 502
Eco47I GGWCC 1 cut(s) 254
Eco81I CCTNAGG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 321, 502
EgeI GGCGCC 2 cut(s) 24, 620
EheI GGCGCC 2 cut(s) 24, 620
ErhI CCWWGG 2 cut(s) 321, 502
FaeI CATG 1 cut(s) 451
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 487
FatI CATG 1 cut(s) 447
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 4 cut(s) 123, 308, 495, 704
Fsp4HI GCNGC 4 cut(s) 123, 308, 495, 704
FspBI CTAG 3 cut(s) 180, 498, 692
GlaI GCGC 3 cut(s) 24, 542, 620
GluI GCNGC 4 cut(s) 123, 308, 495, 704
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 2 cut(s) 26, 622
HaeIII GGCC 1 cut(s) 684
HapII CCGG 4 cut(s) 126, 233, 248, 681
HgaI GACGC 1 cut(s) 128
HhaI GCGC 3 cut(s) 25, 543, 621
Hin1I GRCGYC 2 cut(s) 23, 619
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 3 cut(s) 23, 541, 619
HinP1I GCGC 3 cut(s) 23, 541, 619
HincII GTYRAC 2 cut(s) 316, 658
HindII GTYRAC 2 cut(s) 316, 658
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 106, 217, 336
HpaII CCGG 4 cut(s) 126, 233, 248, 681
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 316, 394, 658
Hpy188I TCNGA 2 cut(s) 68, 742
Hpy188III TCNNGA 1 cut(s) 692
Hpy8I GTNNAC 3 cut(s) 316, 394, 658
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 4 cut(s) 88, 194, 478, 700
HpyCH4IV ACGT 2 cut(s) 603, 669
HpyCH4V TGCA 6 cut(s) 95, 197, 447, 548, 560, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 203, 229
HpyF3I CTNAG 3 cut(s) 29, 465, 714
HpySE526I ACGT 2 cut(s) 603, 669
Hsp92I GRCGYC 2 cut(s) 23, 619
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 3 cut(s) 23, 541, 619
KasI GGCGCC 2 cut(s) 22, 618
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 721
LmnI GCTCC 2 cut(s) 54, 506
Lsp1109I GCAGC 4 cut(s) 109, 319, 481, 715
MaeI CTAG 3 cut(s) 180, 498, 692
MaeII ACGT 2 cut(s) 603, 669
MaeIII GTNAC 3 cut(s) 188, 352, 599
MalI GATC 1 cut(s) 723
MboI GATC 1 cut(s) 721
MboII GAAGA 5 cut(s) 88, 261, 289, 506, 620
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 3 cut(s) 435, 564, 762
Mly113I GGCGCC 2 cut(s) 23, 619
MlyI GAGTC 2 cut(s) 115, 345
MnlI CCTC 8 cut(s) 245, 275, 367, 518, 591, 609, 711, 736
MroNI GCCGGC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 2 cut(s) 459, 627
MspI CCGG 4 cut(s) 126, 233, 248, 681
MspR9I CCNGG 3 cut(s) 248, 249, 408
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 20, 203, 229
NaeI GCCGGC 1 cut(s) 234
NarI GGCGCC 2 cut(s) 23, 619
NciI CCSGG 2 cut(s) 248, 249
NdeII GATC 1 cut(s) 721
NgoMIV GCCGGC 1 cut(s) 232
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 2 cut(s) 24, 620
NmuCI GTSAC 1 cut(s) 599
NspI RCATGY 1 cut(s) 451
PctI GAATGC 1 cut(s) 543
PdiI GCCGGC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 4 cut(s) 124, 309, 496, 705
PleI GAGTC 2 cut(s) 114, 344
PluTI GGCGCC 2 cut(s) 26, 622
PpsI GAGTC 2 cut(s) 114, 344
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 24, 620
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
RsaI GTAC 4 cut(s) 85, 184, 418, 668
RsaNI GTAC 4 cut(s) 84, 183, 417, 667
SalI GTCGAC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 459, 627
SatI GCNGC 4 cut(s) 123, 308, 495, 704
Sau3AI GATC 1 cut(s) 721
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 2 cut(s) 115, 345
ScrFI CCNGG 3 cut(s) 248, 249, 408
SduI GDGCHC 1 cut(s) 511
SfoI GGCGCC 2 cut(s) 24, 620
SinI GGWCC 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 3 cut(s) 435, 564, 762
SsiI CCGC 2 cut(s) 103, 221
SspDI GGCGCC 2 cut(s) 22, 618
SspMI CTAG 3 cut(s) 180, 498, 692
StyD4I CCNGG 3 cut(s) 246, 247, 406
StyI CCWWGG 2 cut(s) 321, 502
TaaI ACNGT 4 cut(s) 88, 194, 478, 700
TaiI ACGT 2 cut(s) 606, 672
TaqI TCGA 2 cut(s) 134, 657
TasI AATT 3 cut(s) 435, 564, 762
TatI WGTACW 2 cut(s) 83, 416
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 459, 627
Tru9I TTAA 2 cut(s) 459, 627
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 4 cut(s) 122, 307, 494, 703
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 2 cut(s) 289, 645
TspGWI ACGGA 3 cut(s) 46, 52, 415
TspMI CCCGGG 1 cut(s) 247
TspRI CASTG 1 cut(s) 718
VpaK11BI GGWCC 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 691
XceI RCATGY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmaI CCCGGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 657
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 3 cut(s) 180, 498, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.