pycom10g03680

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013343
Physical Location & Seq
Forward (+)
3985936 .. 3991205
5270 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g03680.10

Sequence Viewer

Length: 876 bp
ATGTTCGAAATGGTAGCATTAGCAGGTTTCTCAGCCCCTCCGAGGCTGAGCTTTTCATTGGGTTCTTGCCGCCGTAGTAACTCAACATCTCTTCCTTCATTGCCTCTCAGTCTCAGTCTCAGTCTCAGTCTCAGAAATTCGACGCCAAAGTCCACAGTCTCTGCCTTGCACACTCCGTACGGCGATTCTTTAGCAACTAGTGGATTATCAAGTAGAACTTGTGGGTCACCTCTAAAGCTTGACGGCAACGATTTTGGTGATACTAGTACAAGTTATGGTGCAATAGAAGCCAAAAAAGGGAATCCACCCATACTCCCAGCTGTGATGACCCCAGGTGGACCATTGGATCTCTCTTCTGTATTATTCAGGAACCGTATAATCTTCATTGGGCAGCCAGTCACTTCAGCGGTGGCTCAACGAGTCATATCCCAGCTTGTGACTTTGGCTACTATTGATGAGAATTCAGATATACTGGTGTATTTGAACTGCCCTGGTGGGAGTACATACTCTGTTTTGGCAATTTATGACTGCATGTCTTGGATCAAACCTAAGGTAGGAACAGTATGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGGGGAGAAAAGGGAATGCGCTATGCGATGCCAAATGCACGAATCATGATACACCAACCACAGAGTGGTTGTGGGGGCCATGTGGAAGATGTGAGGCGCCAAGTGAACGAAGCAGTTCAAACTCGCCATAAAGTTGACAAAATGTATGTTGCGTTTACTGGGCAATCTCTAGAGAAAGTGCAACAGTACACTGAGAGGGATCGTTTCTTATCTGTTTCCGAGGCTATGGAATTCGGGCTTATTGATGGCGTGCTGGAAACCGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

292

Amino Acids

31.14

Weight (kDa)

7.6

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11750 AT1G11750
fragaria_vesca FvH4_2g13930
malus_domestica MD05G1045200.v1.1 MD10G1052100.v1.1
prunus_persica Prupe.8G061700_v2.0.a1 Prupe.8G061700_v2.0.a1
pyrus_communis pycom10g03680
rosa_chinensis RchiOBHm_Chr6g0275681
rosa_laevigata RLG00000013447
rosa_multiflora Rmu_sc0016068.1_g000003 Rmu_sc0018708.1_g000009
rosa_roxburghii Rroxscaffold_7G00193030
rosa_rugosa Rorug06G0095600
rosa_samantha Rh6AG207500 Rh6CG213500 Rh6DG203200
rosa_wichuraiana Rw6G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 671
AciI CCGC 2 cut(s) 70, 407
AclWI GGATC 3 cut(s) 354, 548, 813
AcsI RAATTY 3 cut(s) 136, 460, 836
AcuI CTGAAG 1 cut(s) 387
AcyI GRCGYC 2 cut(s) 143, 703
AdeI CACNNNGTG 1 cut(s) 671
AfaI GTAC 4 cut(s) 179, 268, 502, 794
AfiI CCNNNNNNNGG 4 cut(s) 42, 297, 554, 671
AgsI TTSAA 2 cut(s) 484, 725
AhdI GACNNNNNGTC 1 cut(s) 532
AhlI ACTAGT 2 cut(s) 197, 263
AjnI CCWGG 2 cut(s) 331, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 5 cut(s) 51, 238, 320, 433, 578
AluI AGCT 5 cut(s) 51, 238, 320, 433, 578
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 5 cut(s) 116, 122, 128, 134, 163
AlwI GGATC 3 cut(s) 354, 548, 813
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 2 cut(s) 391, 578
ApoI RAATTY 3 cut(s) 136, 460, 836
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 627, 705
AspS9I GGNCC 2 cut(s) 338, 682
AsuHPI GGTGA 2 cut(s) 219, 269
AsuII TTCGAA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 549
BanI GGYRCC 1 cut(s) 702
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 2 cut(s) 403, 565
BccI CCATC 1 cut(s) 845
BceAI ACGGC 3 cut(s) 57, 196, 259
BciT130I CCWGG 2 cut(s) 333, 492
BcoDI GTCTC 5 cut(s) 116, 122, 128, 134, 163
BcuI ACTAGT 2 cut(s) 197, 263
BfaI CTAG 3 cut(s) 198, 264, 776
BfoI RGCGCY 1 cut(s) 706
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 70, 392, 579
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 3 cut(s) 71, 393, 580
Bme1390I CCNGG 2 cut(s) 333, 492
Bme18I GGWCC 1 cut(s) 338
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgT120I GGNCC 2 cut(s) 338, 682
BmiI GGNNCC 3 cut(s) 371, 683, 704
BmrFI CCNGG 2 cut(s) 333, 492
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 774
Bpu1102I GCTNAGC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 6
BsaHI GRCGYC 2 cut(s) 143, 703
BsaJI CCNNGG 5 cut(s) 41, 331, 490, 586, 825
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 297, 554, 671
Bse1I ACTGG 3 cut(s) 395, 477, 769
Bse21I CCTNAGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 98
BseBI CCWGG 2 cut(s) 333, 492
BseDI CCNNGG 5 cut(s) 41, 331, 490, 586, 825
BseLI CCNNNNNNNGG 4 cut(s) 42, 297, 554, 671
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 8 cut(s) 38, 45, 121, 127, 133, 139, 145, 789
BseNI ACTGG 3 cut(s) 395, 477, 769
BseXI GCAGC 2 cut(s) 403, 565
BseYI CCCAGC 3 cut(s) 316, 429, 605
BshFI GGCC 1 cut(s) 684
BshNI GGYRCC 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 595
BsiWI CGTACG 1 cut(s) 177
BslI CCNNNNNNNGG 4 cut(s) 42, 297, 554, 671
BsmAI GTCTC 5 cut(s) 116, 122, 128, 134, 163
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 1 cut(s) 684
Bsp119I TTCGAA 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 3 cut(s) 346, 540, 805
Bsp1720I GCTNAGC 1 cut(s) 47
BspACI CCGC 2 cut(s) 70, 407
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 8 cut(s) 39, 44, 120, 126, 132, 138, 144, 790
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 3 cut(s) 371, 683, 704
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 3 cut(s) 354, 548, 813
BspT104I TTCGAA 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 702
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 3 cut(s) 395, 477, 769
BssECI CCNNGG 5 cut(s) 41, 331, 490, 586, 825
BssMI GATC 3 cut(s) 346, 540, 805
BssNI GRCGYC 2 cut(s) 143, 703
BssT1I CCWWGG 1 cut(s) 586
Bst2UI CCWGG 2 cut(s) 333, 492
Bst4CI ACNGT 4 cut(s) 157, 374, 562, 792
Bst6I CTCTTC 2 cut(s) 96, 358
BstACI GRCGYC 2 cut(s) 143, 703
BstBI TTCGAA 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 583, 857
BstDEI CTNAG 9 cut(s) 31, 47, 107, 113, 119, 125, 131, 549, 798
BstEII GGTNACC 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 706
BstHHI GCGC 2 cut(s) 627, 705
BstKTI GATC 3 cut(s) 349, 543, 808
BstMAI GTCTC 5 cut(s) 116, 122, 128, 134, 163
BstMBI GATC 3 cut(s) 346, 540, 805
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 2 cut(s) 333, 492
BstNSI RCATGY 1 cut(s) 535
BstPI GGTNACC 1 cut(s) 225
BstSCI CCNGG 2 cut(s) 331, 490
BstV1I GCAGC 2 cut(s) 403, 565
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 647
BtsIMutI CAGTG 1 cut(s) 795
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 583, 857
CaiI CAGNNNCTG 1 cut(s) 161
CciI TCATGA 1 cut(s) 651
CfoI GCGC 2 cut(s) 627, 705
Cfr13I GGNCC 2 cut(s) 338, 682
CseI GACGC 1 cut(s) 151
Csp6I GTAC 4 cut(s) 178, 267, 501, 793
CviAII CATG 3 cut(s) 532, 652, 686
CviQI GTAC 4 cut(s) 178, 267, 501, 793
DdeI CTNAG 9 cut(s) 31, 47, 107, 113, 119, 125, 131, 549, 798
DinI GGCGCC 1 cut(s) 704
DpnI GATC 3 cut(s) 348, 542, 807
DpnII GATC 3 cut(s) 346, 540, 805
DraIII CACNNNGTG 1 cut(s) 671
DrdI GACNNNNNNGTC 1 cut(s) 148
DriI GACNNNNNGTC 1 cut(s) 532
DseDI GACNNNNNNGTC 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 96, 358
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 2 cut(s) 96, 358
Eco130I CCWWGG 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 549
Eco91I GGTNACC 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 225
EcoRI GAATTC 2 cut(s) 460, 836
EcoRII CCWGG 2 cut(s) 331, 490
EcoT14I CCWWGG 1 cut(s) 586
EgeI GGCGCC 1 cut(s) 704
EheI GGCGCC 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 586
FaeI CATG 3 cut(s) 535, 655, 689
FalI AAGNNNNNCTT 4 cut(s) 202, 234, 579, 611
FatI CATG 3 cut(s) 531, 651, 685
Fnu4HI GCNGC 3 cut(s) 70, 392, 579
Fsp4HI GCNGC 3 cut(s) 70, 392, 579
FspBI CTAG 3 cut(s) 198, 264, 776
GlaI GCGC 2 cut(s) 626, 704
GluI GCNGC 3 cut(s) 70, 392, 579
GsaI CCCAGC 3 cut(s) 320, 433, 609
HaeII RGCGCY 1 cut(s) 706
HaeIII GGCC 1 cut(s) 684
HgaI GACGC 1 cut(s) 151
HhaI GCGC 2 cut(s) 627, 705
Hin1I GRCGYC 2 cut(s) 143, 703
Hin1II CATG 3 cut(s) 535, 655, 689
Hin6I GCGC 2 cut(s) 625, 703
HinP1I GCGC 2 cut(s) 625, 703
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 4 cut(s) 185, 301, 420, 648
HphI GGTGA 2 cut(s) 219, 269
Hpy166II GTNNAC 6 cut(s) 153, 338, 712, 742, 762, 795
Hpy188I TCNGA 4 cut(s) 42, 134, 466, 826
Hpy188III TCNNGA 3 cut(s) 367, 652, 776
Hpy8I GTNNAC 6 cut(s) 153, 338, 712, 742, 762, 795
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 4 cut(s) 157, 374, 562, 792
HpyCH4V TGCA 6 cut(s) 169, 281, 531, 581, 644, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 9 cut(s) 31, 47, 107, 113, 119, 125, 131, 549, 798
Hsp92I GRCGYC 2 cut(s) 143, 703
Hsp92II CATG 3 cut(s) 535, 655, 689
HspAI GCGC 2 cut(s) 625, 703
KasI GGCGCC 1 cut(s) 702
Kzo9I GATC 3 cut(s) 346, 540, 805
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 2 cut(s) 403, 565
LweI GCATC 1 cut(s) 624
MaeI CTAG 3 cut(s) 198, 264, 776
MaeIII GTNAC 4 cut(s) 77, 225, 397, 436
MalI GATC 3 cut(s) 348, 542, 807
MboI GATC 3 cut(s) 346, 540, 805
MboII GAAGA 5 cut(s) 83, 345, 373, 590, 704
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 4 cut(s) 136, 460, 519, 836
Mly113I GGCGCC 1 cut(s) 703
MlyI GAGTC 1 cut(s) 429
MnlI CCTC 7 cut(s) 36, 48, 114, 240, 693, 795, 820
MroXI GAANNNNTTC 1 cut(s) 720
MspA1I CMGCKG 2 cut(s) 320, 407
MspR9I CCNGG 2 cut(s) 333, 492
Mva1269I GAATGC 1 cut(s) 627
MvaI CCWGG 2 cut(s) 333, 492
MwoI GCNNNNNNNGC 1 cut(s) 287
NarI GGCGCC 1 cut(s) 703
NdeII GATC 3 cut(s) 346, 540, 805
NlaIII CATG 3 cut(s) 535, 655, 689
NlaIV GGNNCC 3 cut(s) 371, 683, 704
NmuCI GTSAC 3 cut(s) 225, 397, 436
NspI RCATGY 1 cut(s) 535
NspV TTCGAA 1 cut(s) 6
PagI TCATGA 1 cut(s) 651
PctI GAATGC 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 3 cut(s) 185, 301, 648
Pfl23II CGTACG 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 3 cut(s) 71, 393, 580
PleI GAGTC 1 cut(s) 428
PluTI GGCGCC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 331, 490
PspEI GGTNACC 1 cut(s) 225
PspFI CCCAGC 3 cut(s) 316, 429, 605
PspGI CCWGG 2 cut(s) 331, 490
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 371, 683, 704
PspPI GGNCC 2 cut(s) 338, 682
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 4 cut(s) 179, 268, 502, 794
RsaNI GTAC 4 cut(s) 178, 267, 501, 793
SatI GCNGC 3 cut(s) 70, 392, 579
Sau3AI GATC 3 cut(s) 346, 540, 805
Sau96I GGNCC 2 cut(s) 338, 682
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 2 cut(s) 333, 492
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 1 cut(s) 624
SfoI GGCGCC 1 cut(s) 704
SfuI TTCGAA 1 cut(s) 6
SinI GGWCC 1 cut(s) 338
SpeI ACTAGT 2 cut(s) 197, 263
Sse9I AATT 4 cut(s) 136, 460, 519, 836
SsiI CCGC 2 cut(s) 70, 407
SspDI GGCGCC 1 cut(s) 702
SspI AATATT 1 cut(s) 872
SspMI CTAG 3 cut(s) 198, 264, 776
StyD4I CCNGG 2 cut(s) 331, 490
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 4 cut(s) 157, 374, 562, 792
TaqI TCGA 2 cut(s) 6, 140
TasI AATT 4 cut(s) 136, 460, 519, 836
TatI WGTACW 3 cut(s) 266, 500, 792
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 185, 301, 648
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 3 cut(s) 225, 397, 436
TseI GCWGC 2 cut(s) 391, 578
Tsp45I GTSAC 3 cut(s) 225, 397, 436
TspDTI ATGAA 3 cut(s) 45, 87, 373
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 802
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 3 cut(s) 136, 460, 836
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 3 cut(s) 198, 264, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.