MD10G1052100.v1.1

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013343
Physical Location & Seq
Forward (+)
6910182 .. 6916268
6087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1052100.v1.1.491

Sequence Viewer

Length: 849 bp
ATGGTAGCATTAGCAGGTTTCTCAGCCCCTCCGAGGCTGAGCTTTTCATTGGGTTCTTGCCGCAGTAGTAACTCAACATCTCTTCCTTTGTTGCCTCTCAGTCTCAGAAATTCGACGCCCAAGTCCACAGTCTCTGCCTTGCACACTCCGTACGGCGATTCTTTAGCAACTAGTGGATTATCAAGTAGAACTTGTGGGTCACCTCTAAAGCTTGACGGCAACGATTTTGGTGATACCAGTACAAGTTATGGTGCAATAGAAGCCAAAAAAGGGAATCCACCCATACTCCCAGCTGTGATGACCCCAGGTGGACCATTGGATCTCTCATCTGTATTATTCAGGAACCGTATAATCTTCATTGGGCAGCCAGTCACTTCAGCGGTGGCACAACGAGTCATATCCCAGCTTGTGACTTTGGCTACTATTGATGAGAATTCAGATATACTGGTGTATTTGAACTGCCCTGGTGGGAGTACATACTCTGTTTTGGCAATTTATGACTGCATGTCTTGGATCAAACCTAAGGTAGGAACAGTATGTTTCGGAGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGGGGAGAAAAAGGAATGCGCTATGCGATGCCAAATGCACGAATCATGATACACCAACCACAGAGTGGATGTGGGGGCCACGTGGAAGATGTGAGGCGCCAAGTGAATGAAGCAGTTCAAACTCGCCATAAAGTCGACAAAATGTATGTTGCGTTTACTGGGCAATCTCTAGAGAAAGTGCAACAGTACACTGAGAGGGATCGTTTCTTATCTGTTTCCGAGGCTATGGAATTCGGGCTTATTGATGGCGTGCTGGAAACCGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

283

Amino Acids

30.09

Weight (kDa)

7.6

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 107 - 280 4.6e-67 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11750 AT1G11750
fragaria_vesca FvH4_2g13930
malus_domestica MD05G1045200.v1.1 MD10G1052100.v1.1
prunus_persica Prupe.8G061700_v2.0.a1 Prupe.8G061700_v2.0.a1
pyrus_communis pycom10g03680
rosa_chinensis RchiOBHm_Chr6g0275681
rosa_laevigata RLG00000013447
rosa_multiflora Rmu_sc0016068.1_g000003 Rmu_sc0018708.1_g000009
rosa_roxburghii Rroxscaffold_7G00193030
rosa_rugosa Rorug06G0095600
rosa_samantha Rh6AG207500 Rh6CG213500 Rh6DG203200
rosa_wichuraiana Rw6G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 644
AccI GTMKAC 1 cut(s) 714
AciI CCGC 2 cut(s) 61, 380
AclWI GGATC 3 cut(s) 327, 521, 786
AcsI RAATTY 3 cut(s) 109, 433, 809
AcuI CTGAAG 1 cut(s) 360
AcvI CACGTG 1 cut(s) 661
AcyI GRCGYC 2 cut(s) 116, 676
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 4 cut(s) 152, 241, 475, 767
AfiI CCNNNNNNNGG 4 cut(s) 33, 270, 527, 644
AgsI TTSAA 2 cut(s) 457, 698
AhdI GACNNNNNGTC 1 cut(s) 505
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 2 cut(s) 304, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 5 cut(s) 42, 211, 293, 406, 551
AluI AGCT 5 cut(s) 42, 211, 293, 406, 551
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 107, 136
AlwI GGATC 3 cut(s) 327, 521, 786
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 1 cut(s) 655
ApeKI GCWGC 2 cut(s) 364, 551
ApoI RAATTY 3 cut(s) 109, 433, 809
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 2 cut(s) 600, 678
AspS9I GGNCC 2 cut(s) 311, 655
AsuHPI GGTGA 2 cut(s) 192, 242
AvaII GGWCC 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 522
BanI GGYRCC 1 cut(s) 675
BbrPI CACGTG 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 2 cut(s) 376, 538
BccI CCATC 1 cut(s) 818
BceAI ACGGC 2 cut(s) 169, 232
BciT130I CCWGG 2 cut(s) 306, 465
BcoDI GTCTC 2 cut(s) 107, 136
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 2 cut(s) 171, 749
BfoI RGCGCY 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 3 cut(s) 61, 365, 552
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 3 cut(s) 62, 366, 553
Bme1390I CCNGG 2 cut(s) 306, 465
Bme18I GGWCC 1 cut(s) 311
BmeRI GACNNNNNGTC 1 cut(s) 505
BmgT120I GGNCC 2 cut(s) 311, 655
BmiI GGNNCC 3 cut(s) 344, 656, 677
BmrFI CCNGG 2 cut(s) 306, 465
BmrI ACTGGG 1 cut(s) 747
BmsI GCATC 1 cut(s) 597
BmuI ACTGGG 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 661
BsaHI GRCGYC 2 cut(s) 116, 676
BsaJI CCNNGG 5 cut(s) 32, 304, 463, 559, 798
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 270, 527, 644
Bse1I ACTGG 4 cut(s) 237, 368, 450, 742
Bse21I CCTNAGG 1 cut(s) 522
BseBI CCWGG 2 cut(s) 306, 465
BseDI CCNNGG 5 cut(s) 32, 304, 463, 559, 798
BseGI GGATG 1 cut(s) 653
BseLI CCNNNNNNNGG 4 cut(s) 33, 270, 527, 644
BseMII CTCAG 5 cut(s) 29, 36, 112, 118, 762
BseNI ACTGG 4 cut(s) 237, 368, 450, 742
BseXI GCAGC 2 cut(s) 376, 538
BseYI CCCAGC 3 cut(s) 289, 402, 578
BshFI GGCC 1 cut(s) 657
BshNI GGYRCC 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 568
BsiWI CGTACG 1 cut(s) 150
BslI CCNNNNNNNGG 4 cut(s) 33, 270, 527, 644
BsmAI GTCTC 2 cut(s) 107, 136
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 3 cut(s) 319, 513, 778
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 2 cut(s) 61, 380
BspANI GGCC 1 cut(s) 657
BspCNI CTCAG 5 cut(s) 30, 35, 111, 117, 763
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 3 cut(s) 344, 656, 677
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 3 cut(s) 327, 521, 786
BspT107I GGYRCC 1 cut(s) 675
BsrI ACTGG 4 cut(s) 237, 368, 450, 742
BssECI CCNNGG 5 cut(s) 32, 304, 463, 559, 798
BssMI GATC 3 cut(s) 319, 513, 778
BssNI GRCGYC 2 cut(s) 116, 676
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 2 cut(s) 306, 465
Bst4CI ACNGT 4 cut(s) 130, 347, 535, 765
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 2 cut(s) 116, 676
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 556, 830
BstDEI CTNAG 6 cut(s) 22, 38, 98, 104, 522, 771
BstEII GGTNACC 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 653
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 2 cut(s) 600, 678
BstKTI GATC 3 cut(s) 322, 516, 781
BstMAI GTCTC 2 cut(s) 107, 136
BstMBI GATC 3 cut(s) 319, 513, 778
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 2 cut(s) 306, 465
BstNSI RCATGY 1 cut(s) 508
BstPI GGTNACC 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 304, 463
BstV1I GCAGC 2 cut(s) 376, 538
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 620
BtsCI GGATG 1 cut(s) 653
BtsIMutI CAGTG 1 cut(s) 768
BveI ACCTGC 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 556, 830
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 624
CfoI GCGC 2 cut(s) 600, 678
Cfr13I GGNCC 2 cut(s) 311, 655
CseI GACGC 1 cut(s) 124
Csp6I GTAC 4 cut(s) 151, 240, 474, 766
CviAII CATG 2 cut(s) 505, 625
CviQI GTAC 4 cut(s) 151, 240, 474, 766
DdeI CTNAG 6 cut(s) 22, 38, 98, 104, 522, 771
DinI GGCGCC 1 cut(s) 677
DpnI GATC 3 cut(s) 321, 515, 780
DpnII GATC 3 cut(s) 319, 513, 778
DraIII CACNNNGTG 1 cut(s) 644
DrdI GACNNNNNNGTC 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 505
DseDI GACNNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 87
Eam1105I GACNNNNNGTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 1 cut(s) 360
Eco72I CACGTG 1 cut(s) 661
Eco81I CCTNAGG 1 cut(s) 522
Eco91I GGTNACC 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO65I GGTNACC 1 cut(s) 198
EcoRI GAATTC 2 cut(s) 433, 809
EcoRII CCWGG 2 cut(s) 304, 463
EcoT14I CCWWGG 1 cut(s) 559
EgeI GGCGCC 1 cut(s) 677
EheI GGCGCC 1 cut(s) 677
ErhI CCWWGG 1 cut(s) 559
FaeI CATG 2 cut(s) 508, 628
FalI AAGNNNNNCTT 4 cut(s) 175, 207, 552, 584
FatI CATG 2 cut(s) 504, 624
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 61, 365, 552
FokI GGATG 1 cut(s) 660
Fsp4HI GCNGC 3 cut(s) 61, 365, 552
FspBI CTAG 2 cut(s) 171, 749
GlaI GCGC 2 cut(s) 599, 677
GluI GCNGC 3 cut(s) 61, 365, 552
GsaI CCCAGC 3 cut(s) 293, 406, 582
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 1 cut(s) 657
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 600, 678
Hin1I GRCGYC 2 cut(s) 116, 676
Hin1II CATG 2 cut(s) 508, 628
Hin6I GCGC 2 cut(s) 598, 676
HinP1I GCGC 2 cut(s) 598, 676
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 4 cut(s) 158, 274, 393, 621
HphI GGTGA 2 cut(s) 192, 242
Hpy166II GTNNAC 5 cut(s) 126, 311, 715, 735, 768
Hpy188I TCNGA 5 cut(s) 33, 107, 439, 545, 799
Hpy188III TCNNGA 3 cut(s) 340, 625, 749
Hpy8I GTNNAC 5 cut(s) 126, 311, 715, 735, 768
Hpy99I CGWCG 1 cut(s) 118
HpyCH4III ACNGT 4 cut(s) 130, 347, 535, 765
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 6 cut(s) 142, 254, 504, 554, 617, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 6 cut(s) 22, 38, 98, 104, 522, 771
HpySE526I ACGT 1 cut(s) 660
Hsp92I GRCGYC 2 cut(s) 116, 676
Hsp92II CATG 2 cut(s) 508, 628
HspAI GCGC 2 cut(s) 598, 676
KasI GGCGCC 1 cut(s) 675
Kzo9I GATC 3 cut(s) 319, 513, 778
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 2 cut(s) 376, 538
LweI GCATC 1 cut(s) 597
MaeI CTAG 2 cut(s) 171, 749
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 4 cut(s) 68, 198, 370, 409
MalI GATC 3 cut(s) 321, 515, 780
MboI GATC 3 cut(s) 319, 513, 778
MboII GAAGA 4 cut(s) 74, 346, 563, 677
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 4 cut(s) 109, 433, 492, 809
Mly113I GGCGCC 1 cut(s) 676
MlyI GAGTC 1 cut(s) 402
MnlI CCTC 7 cut(s) 27, 39, 105, 213, 666, 768, 793
MroXI GAANNNNTTC 1 cut(s) 693
MspA1I CMGCKG 2 cut(s) 293, 380
MspR9I CCNGG 2 cut(s) 306, 465
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 2 cut(s) 306, 465
MwoI GCNNNNNNNGC 1 cut(s) 260
NarI GGCGCC 1 cut(s) 676
NdeII GATC 3 cut(s) 319, 513, 778
NlaIII CATG 2 cut(s) 508, 628
NlaIV GGNNCC 3 cut(s) 344, 656, 677
NmuCI GTSAC 3 cut(s) 198, 370, 409
NspI RCATGY 1 cut(s) 508
PagI TCATGA 1 cut(s) 624
PctI GAATGC 1 cut(s) 600
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 3 cut(s) 158, 274, 621
Pfl23II CGTACG 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 3 cut(s) 62, 366, 553
PleI GAGTC 1 cut(s) 401
PluTI GGCGCC 1 cut(s) 679
PmaCI CACGTG 1 cut(s) 661
PmlI CACGTG 1 cut(s) 661
PpsI GAGTC 1 cut(s) 401
Ppu21I YACGTR 1 cut(s) 661
Psp6I CCWGG 2 cut(s) 304, 463
PspCI CACGTG 1 cut(s) 661
PspEI GGTNACC 1 cut(s) 198
PspFI CCCAGC 3 cut(s) 289, 402, 578
PspGI CCWGG 2 cut(s) 304, 463
PspLI CGTACG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 344, 656, 677
PspPI GGNCC 2 cut(s) 311, 655
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 4 cut(s) 152, 241, 475, 767
RsaNI GTAC 4 cut(s) 151, 240, 474, 766
SalI GTCGAC 1 cut(s) 713
SatI GCNGC 3 cut(s) 61, 365, 552
Sau3AI GATC 3 cut(s) 319, 513, 778
Sau96I GGNCC 2 cut(s) 311, 655
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 2 cut(s) 306, 465
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 597
SfoI GGCGCC 1 cut(s) 677
SinI GGWCC 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 4 cut(s) 109, 433, 492, 809
SsiI CCGC 2 cut(s) 61, 380
SspDI GGCGCC 1 cut(s) 675
SspI AATATT 1 cut(s) 845
SspMI CTAG 2 cut(s) 171, 749
StyD4I CCNGG 2 cut(s) 304, 463
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 4 cut(s) 130, 347, 535, 765
TaiI ACGT 1 cut(s) 663
TaqI TCGA 2 cut(s) 113, 714
TasI AATT 4 cut(s) 109, 433, 492, 809
TatI WGTACW 3 cut(s) 239, 473, 765
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 3 cut(s) 158, 274, 621
TscAI CASTG 1 cut(s) 775
TseFI GTSAC 3 cut(s) 198, 370, 409
TseI GCWGC 2 cut(s) 364, 551
Tsp45I GTSAC 3 cut(s) 198, 370, 409
TspDTI ATGAA 3 cut(s) 36, 346, 702
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 775
Van91I CCANNNNNTGG 1 cut(s) 644
VpaK11BI GGWCC 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 3 cut(s) 109, 433, 809
XbaI TCTAGA 1 cut(s) 748
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 2 cut(s) 171, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.