MD05G1045200.v1.1

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013343
Physical Location & Seq
Forward (+)
7748526 .. 7753850
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1045200.v1.1.491

Sequence Viewer

Length: 840 bp
ATGGGAGCGTTAGCTGGTTTCTCAGCCCCTCTGAGCTTTTCATTGGCTTCTCGCCGGAGTAATAACTCATCATCTCTTCCTTTATTGCCTCTCAGTCGCAGAAACTCAACGCCCAAGTCCACAGTGTCTGCCTTGCACAGTCCGTATGGCGATTCTTTAGCAACTGGGTTATCTAGCAGAACTTGTGGGTCACCTCTAAAGCTTGACGGCAACGATTTTGGTGATACTAGTACAAGTTATGGTGCAATAGAAGCCAAAAAGGGGAATCCACCCATACTCCCAGCTGTGATGACCCCAGGTGGACCATTAGATCTCTCGTCTGTATTATTCAGGAACCGTATAATCTTCATTGGGCAGCCAGTCACTTCAGCGGTGGCTCAACGAGTCATATCCCAGCTTGTGACTTTGGCTACTATTGATGAGAATTCAGATATACTGGTGTATTTGAACTGCCCTGGTGGGAGTACATACTCTGTTTTGGCAATTTATGACTGCATGTCTTGGATCAAACCTAAGGTAGGAACGGTATGTTTTGGAGTAGCGGCAAGCCAAGGAGCACTTCTTCTTGCTGGGGGAGAAAAGGGAATGCGCTATGCAATGCCAAATGCACGGATCATGATACACCAACCACAGAGTGGATGTGGGGGCCACGTGGAAGATGTGAGGCGGCAAGTGAATGAAGCAGTTCAAACTCGCCATAAAGTCGACAAAATGTATGTTGCATTTACTGGACAATCTCTAGAGAAAGTACAACAGTACACAGAGAGGGATCGTTTCTTATCTGTTTCTGAGGCTATGGAATTTGGGCTTATCGACGGCGTGTTGGAAACCGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

280

Amino Acids

29.81

Weight (kDa)

8.24

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 104 - 277 4.5e-67 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11750 AT1G11750
fragaria_vesca FvH4_2g13930
malus_domestica MD05G1045200.v1.1 MD10G1052100.v1.1
prunus_persica Prupe.8G061700_v2.0.a1 Prupe.8G061700_v2.0.a1
pyrus_communis pycom10g03680
rosa_chinensis RchiOBHm_Chr6g0275681
rosa_laevigata RLG00000013447
rosa_multiflora Rmu_sc0016068.1_g000003 Rmu_sc0018708.1_g000009
rosa_roxburghii Rroxscaffold_7G00193030
rosa_rugosa Rorug06G0095600
rosa_samantha Rh6AG207500 Rh6CG213500 Rh6DG203200
rosa_wichuraiana Rw6G018090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 1 cut(s) 705
AciI CCGC 3 cut(s) 371, 542, 667
AclWI GGATC 3 cut(s) 512, 620, 777
AcsI RAATTY 2 cut(s) 424, 800
AcuI CTGAAG 1 cut(s) 351
AcvI CACGTG 1 cut(s) 652
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 4 cut(s) 232, 466, 750, 758
AfiI CCNNNNNNNGG 3 cut(s) 261, 518, 635
AgsI TTSAA 2 cut(s) 448, 689
AhdI GACNNNNNGTC 1 cut(s) 496
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 2 cut(s) 295, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 5 cut(s) 14, 36, 202, 284, 397
AluI AGCT 5 cut(s) 14, 36, 202, 284, 397
Alw21I GWGCWC 1 cut(s) 559
AlwI GGATC 3 cut(s) 512, 620, 777
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 424, 800
Asp700I GAANNNNTTC 1 cut(s) 684
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 302, 646
AsuHPI GGTGA 2 cut(s) 183, 233
AvaII GGWCC 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 513
BbrPI CACGTG 1 cut(s) 652
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 1 cut(s) 367
BceAI ACGGC 2 cut(s) 223, 832
BciT130I CCWGG 2 cut(s) 297, 456
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 3 cut(s) 174, 228, 740
BglII AGATCT 1 cut(s) 310
BisI GCNGC 3 cut(s) 356, 543, 668
BlsI GCNGC 3 cut(s) 357, 544, 669
Bme1390I CCNGG 2 cut(s) 297, 456
Bme18I GGWCC 1 cut(s) 302
BmeRI GACNNNNNGTC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 302, 646
BmiI GGNNCC 2 cut(s) 335, 647
BmrFI CCNGG 2 cut(s) 297, 456
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 652
BsaJI CCNNGG 3 cut(s) 295, 454, 550
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 518, 635
Bse1I ACTGG 4 cut(s) 169, 359, 441, 733
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 2 cut(s) 297, 456
BseDI CCNNGG 3 cut(s) 295, 454, 550
BseGI GGATG 1 cut(s) 644
BseLI CCNNNNNNNGG 3 cut(s) 261, 518, 635
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 4 cut(s) 23, 36, 106, 780
BseNI ACTGG 4 cut(s) 169, 359, 441, 733
BseXI GCAGC 1 cut(s) 367
BseYI CCCAGC 3 cut(s) 280, 393, 569
BshFI GGCC 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 559
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 3 cut(s) 261, 518, 635
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 4 cut(s) 310, 504, 612, 769
BspACI CCGC 3 cut(s) 371, 542, 667
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 4 cut(s) 24, 35, 105, 781
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 335, 647
BspPI GGATC 3 cut(s) 512, 620, 777
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 4 cut(s) 169, 359, 441, 733
BssECI CCNNGG 3 cut(s) 295, 454, 550
BssMI GATC 4 cut(s) 310, 504, 612, 769
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 2 cut(s) 297, 456
Bst4CI ACNGT 5 cut(s) 124, 140, 338, 526, 756
Bst6I CTCTTC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 5 cut(s) 22, 32, 92, 513, 789
BstEII GGTNACC 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 644
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 4 cut(s) 313, 507, 615, 772
BstMBI GATC 4 cut(s) 310, 504, 612, 769
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 297, 456
BstNSI RCATGY 1 cut(s) 499
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 295, 454
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 1 cut(s) 648
BtsCI GGATG 1 cut(s) 644
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 128
CciI TCATGA 1 cut(s) 615
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 2 cut(s) 302, 646
Csp6I GTAC 4 cut(s) 231, 465, 749, 757
CviAII CATG 2 cut(s) 496, 616
CviQI GTAC 4 cut(s) 231, 465, 749, 757
DdeI CTNAG 5 cut(s) 22, 32, 92, 513, 789
DpnI GATC 4 cut(s) 312, 506, 614, 771
DpnII GATC 4 cut(s) 310, 504, 612, 769
DraIII CACNNNGTG 1 cut(s) 635
DriI GACNNNNNGTC 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 351
Eco72I CACGTG 1 cut(s) 652
Eco81I CCTNAGG 1 cut(s) 513
Eco91I GGTNACC 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoO65I GGTNACC 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 295, 454
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 2 cut(s) 499, 619
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 2 cut(s) 495, 615
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 3 cut(s) 356, 543, 668
FokI GGATG 1 cut(s) 651
Fsp4HI GCNGC 3 cut(s) 356, 543, 668
FspBI CTAG 3 cut(s) 174, 228, 740
GlaI GCGC 1 cut(s) 590
GluI GCNGC 3 cut(s) 356, 543, 668
GsaI CCCAGC 3 cut(s) 284, 397, 573
HaeIII GGCC 1 cut(s) 648
HapII CCGG 1 cut(s) 55
HhaI GCGC 1 cut(s) 591
Hin1II CATG 2 cut(s) 499, 619
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 152, 265, 384
HpaII CCGG 1 cut(s) 55
HphI GGTGA 2 cut(s) 183, 233
Hpy166II GTNNAC 4 cut(s) 120, 302, 706, 759
Hpy188I TCNGA 3 cut(s) 33, 430, 790
Hpy188III TCNNGA 3 cut(s) 331, 616, 740
Hpy8I GTNNAC 4 cut(s) 120, 302, 706, 759
Hpy99I CGWCG 1 cut(s) 818
HpyCH4III ACNGT 5 cut(s) 124, 140, 338, 526, 756
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 6 cut(s) 136, 245, 495, 596, 608, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 5 cut(s) 22, 32, 92, 513, 789
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 2 cut(s) 499, 619
HspAI GCGC 1 cut(s) 589
Kzo9I GATC 4 cut(s) 310, 504, 612, 769
LmnI GCTCC 2 cut(s) 5, 554
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 3 cut(s) 174, 228, 740
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 189, 361, 400
MalI GATC 4 cut(s) 312, 506, 614, 771
MboI GATC 4 cut(s) 310, 504, 612, 769
MboII GAAGA 4 cut(s) 68, 337, 554, 668
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 3 cut(s) 424, 483, 800
MlyI GAGTC 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 804
MnlI CCTC 6 cut(s) 39, 99, 204, 657, 759, 784
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 1 cut(s) 838
MspA1I CMGCKG 2 cut(s) 284, 371
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 297, 456
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 2 cut(s) 297, 456
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 4 cut(s) 310, 504, 612, 769
NlaIII CATG 2 cut(s) 499, 619
NlaIV GGNNCC 2 cut(s) 335, 647
NmuCI GTSAC 3 cut(s) 189, 361, 400
NspI RCATGY 1 cut(s) 499
PagI TCATGA 1 cut(s) 615
PctI GAATGC 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 152, 265
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 3 cut(s) 357, 544, 669
PleI GAGTC 1 cut(s) 392
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 295, 454
PspCI CACGTG 1 cut(s) 652
PspEI GGTNACC 1 cut(s) 189
PspFI CCCAGC 3 cut(s) 280, 393, 569
PspGI CCWGG 2 cut(s) 295, 454
PspN4I GGNNCC 2 cut(s) 335, 647
PspPI GGNCC 2 cut(s) 302, 646
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 4 cut(s) 232, 466, 750, 758
RsaNI GTAC 4 cut(s) 231, 465, 749, 757
SalI GTCGAC 1 cut(s) 704
SaqAI TTAA 1 cut(s) 838
SatI GCNGC 3 cut(s) 356, 543, 668
Sau3AI GATC 4 cut(s) 310, 504, 612, 769
Sau96I GGNCC 2 cut(s) 302, 646
SchI GAGTC 1 cut(s) 393
ScrFI CCNGG 2 cut(s) 297, 456
SduI GDGCHC 1 cut(s) 559
SinI GGWCC 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 3 cut(s) 424, 483, 800
SsiI CCGC 3 cut(s) 371, 542, 667
SspMI CTAG 3 cut(s) 174, 228, 740
StyD4I CCNGG 2 cut(s) 295, 454
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 5 cut(s) 124, 140, 338, 526, 756
TaiI ACGT 1 cut(s) 654
TaqI TCGA 2 cut(s) 705, 813
TasI AATT 3 cut(s) 424, 483, 800
TatI WGTACW 4 cut(s) 230, 464, 748, 756
TauI GCSGC 2 cut(s) 545, 670
TfiI GAWTC 2 cut(s) 152, 265
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 3 cut(s) 189, 361, 400
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 3 cut(s) 189, 361, 400
TspDTI ATGAA 3 cut(s) 30, 337, 693
TspGWI ACGGA 2 cut(s) 132, 625
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 635
VpaK11BI GGWCC 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 516
XapI RAATTY 2 cut(s) 424, 800
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 3 cut(s) 174, 228, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.